Wall clock time and date at job start Tue Mar 31 2020 13:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38338 * 119.88030 * 2 1 4 4 C 1.37991 * 120.12487 * 180.25210 * 3 2 1 5 5 C 1.39367 * 119.87493 * 359.74783 * 4 3 2 6 6 C 1.48388 * 120.12076 * 180.02562 * 5 4 3 7 7 C 1.38665 * 120.01234 * 309.70252 * 6 5 4 8 8 C 1.40552 * 119.65435 * 179.70267 * 7 6 5 9 9 C 1.41346 * 120.15919 * 180.29186 * 8 7 6 10 10 H 1.08000 * 120.00275 * 204.73966 * 9 8 7 11 11 C 1.39904 * 119.99614 * 24.73507 * 9 8 7 12 12 N 1.30863 * 119.99752 * 17.75203 * 11 9 8 13 13 Si 1.86797 * 119.99718 * 197.74642 * 11 9 8 14 14 H 1.48503 * 109.46664 * 90.00268 * 13 11 9 15 15 H 1.48495 * 109.47268 * 210.00075 * 13 11 9 16 16 H 1.48497 * 109.47248 * 330.00394 * 13 11 9 17 17 C 1.40850 * 119.68667 * 0.62069 * 8 7 6 18 18 C 1.37553 * 120.02289 * 359.64980 * 17 8 7 19 19 C 1.38760 * 120.34778 * 0.03037 * 18 17 8 20 20 F 1.35101 * 119.84526 * 179.97438 * 19 18 17 21 21 C 1.39321 * 119.75809 * 0.02562 * 5 4 3 22 22 C 1.38036 * 119.87667 * 359.97438 * 21 5 4 23 23 C 1.50696 * 119.94172 * 179.97438 * 22 21 5 24 24 F 1.39908 * 109.47176 * 0.02562 * 23 22 21 25 25 F 1.39897 * 109.47430 * 240.00390 * 23 22 21 26 26 F 1.39897 * 109.47513 * 119.99708 * 23 22 21 27 27 H 1.08996 * 109.47485 * 270.25188 * 1 2 3 28 28 H 1.08997 * 109.46857 * 30.25628 * 1 2 3 29 29 H 1.09005 * 109.47195 * 150.25592 * 1 2 3 30 30 H 1.08004 * 119.93931 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.06737 * 179.77190 * 4 3 2 32 32 H 1.08005 * 120.17875 * 0.02562 * 7 6 5 33 33 H 0.97001 * 119.99194 * 179.97438 * 12 11 9 34 34 H 1.07994 * 119.98956 * 179.68526 * 17 8 7 35 35 H 1.07997 * 119.82704 * 180.02562 * 18 17 8 36 36 H 1.07997 * 120.06240 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1995 0.0000 4 6 3.5761 1.2054 -0.0053 5 6 4.2754 -0.0001 -0.0052 6 6 5.7593 -0.0001 -0.0103 7 6 6.4497 0.7650 -0.9380 8 6 7.8552 0.7643 -0.9320 9 6 8.5698 1.5451 -1.8688 10 1 9.5766 1.2693 -2.1456 11 6 7.9727 2.6753 -2.4376 12 7 6.9215 3.2136 -1.8738 13 14 8.6761 3.4160 -4.0015 14 1 8.0296 2.7870 -5.1812 15 1 8.4178 4.8782 -4.0164 16 1 10.1400 3.1713 -4.0502 17 6 8.5484 -0.0236 0.0075 18 6 7.8503 -0.7821 0.9183 19 6 6.4627 -0.7771 0.9177 20 9 5.7873 -1.5263 1.8164 21 6 3.5763 -1.2052 -0.0005 22 6 2.1959 -1.1993 0.0048 23 6 1.4382 -2.5019 0.0093 24 9 2.3439 -3.5682 0.0079 25 9 0.6294 -2.5749 -1.1298 26 9 0.6380 -2.5720 1.1547 27 1 -0.3634 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3634 -0.8923 -0.5099 30 1 1.6532 2.1331 -0.0004 31 1 4.1132 2.1424 -0.0090 32 1 5.9104 1.3626 -1.6581 33 1 6.5078 3.9974 -2.2680 34 1 9.6283 -0.0318 0.0132 35 1 8.3850 -1.3847 1.6375 36 1 4.1132 -2.1422 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242672311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:24 Heat of formation + Delta-G solvation = -176.488093 kcal Electronic energy + Delta-G solvation = -26878.459859 eV Core-core repulsion = 22404.559628 eV Total energy + Delta-G solvation = -4473.900230 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.28317 -49.35543 -48.79065 -48.68878 -40.71752 -39.08149 -35.65384 -34.59173 -32.90571 -31.37797 -31.19186 -28.13368 -26.93753 -26.53353 -23.66277 -23.49586 -22.65378 -21.72876 -19.60905 -19.56459 -19.46282 -18.59326 -17.97268 -17.23719 -16.77962 -16.63823 -16.27219 -16.05179 -15.77891 -15.72827 -15.51693 -15.19387 -15.07285 -14.89177 -14.86543 -14.65377 -14.58567 -14.08222 -13.86942 -13.75896 -13.63719 -13.30051 -13.13069 -13.01439 -12.80525 -12.59532 -12.46658 -12.23805 -12.11023 -11.71907 -11.38130 -11.03369 -10.28356 -10.08207 -9.35488 -9.10244 -8.68968 -6.38271 -0.16394 0.07216 0.77301 0.93183 1.41691 1.49192 1.53766 1.58668 2.20040 2.40601 2.61610 2.66990 2.96045 3.36529 3.53842 3.63127 3.75645 3.85720 3.91533 4.14617 4.28418 4.32526 4.55248 4.60124 4.71989 4.73846 4.87088 4.97743 5.04869 5.10263 5.14689 5.24436 5.32325 5.46600 5.49194 5.70627 5.79726 5.83901 5.98962 6.21061 6.53921 6.83716 6.86620 8.26389 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003945 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.037647 B = 7095.665517 C = 8081.847874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.039 4.039 3 C -0.114 4.114 4 C -0.074 4.074 5 C -0.054 4.054 6 C -0.070 4.070 7 C -0.141 4.141 8 C 0.076 3.924 9 C -0.485 4.485 10 H 0.084 0.916 11 C 0.040 3.960 12 N -0.813 5.813 13 Si 0.981 3.019 14 H -0.264 1.264 15 H -0.267 1.267 16 H -0.258 1.258 17 C -0.211 4.211 18 C -0.115 4.115 19 C -0.049 4.049 20 F -0.166 7.166 21 C -0.066 4.066 22 C -0.199 4.199 23 C 0.518 3.482 24 F -0.183 7.183 25 F -0.172 7.172 26 F -0.173 7.173 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.169 0.831 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.293 0.707 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 -2.313 0.716 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.040 4.040 3 C -0.131 4.131 4 C -0.092 4.092 5 C -0.054 4.054 6 C -0.071 4.071 7 C -0.161 4.161 8 C 0.073 3.927 9 C -0.514 4.514 10 H 0.102 0.898 11 C -0.177 4.177 12 N -0.438 5.438 13 Si 0.801 3.199 14 H -0.189 1.189 15 H -0.192 1.192 16 H -0.182 1.182 17 C -0.231 4.231 18 C -0.134 4.134 19 C -0.068 4.068 20 F -0.145 7.145 21 C -0.085 4.085 22 C -0.201 4.201 23 C 0.464 3.536 24 F -0.165 7.165 25 F -0.154 7.154 26 F -0.154 7.154 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.186 0.814 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.900 -2.178 0.744 12.121 hybrid contribution 0.570 -0.168 -0.282 0.658 sum -11.330 -2.346 0.462 11.579 Atomic orbital electron populations 1.21173 0.87926 1.05122 1.04380 1.20009 0.97974 0.90979 0.95006 1.21273 0.92801 0.98613 1.00453 1.21655 0.95103 0.97368 0.95101 1.18847 0.92070 0.93584 1.00936 1.18655 0.91432 0.99435 0.97627 1.21252 0.94231 1.00766 0.99801 1.17957 0.92277 0.91184 0.91258 1.19863 1.01808 1.08482 1.21205 0.89822 1.26711 0.94483 0.96216 1.00279 1.69826 1.18903 1.18190 1.36855 0.85207 0.79792 0.77600 0.77255 1.18899 1.19187 1.18171 1.21110 0.98987 1.04469 0.98486 1.20742 0.91603 1.00698 1.00330 1.17461 0.90121 1.02963 0.96298 1.91292 1.80834 1.75466 1.66904 1.20967 0.92618 0.98359 0.96522 1.19804 0.93885 0.92691 1.13679 1.18099 0.77243 0.84446 0.73824 1.93161 1.67532 1.59518 1.96252 1.93159 1.74280 1.96588 1.51338 1.93198 1.74784 1.96742 1.50702 0.88902 0.88101 0.91020 0.81369 0.85125 0.86221 0.89661 0.86430 0.85206 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.98 71.24 0.64 -1.75 16 2 C -0.04 -1.03 5.85 -19.82 -0.12 -1.15 16 3 C -0.11 -3.03 9.68 22.23 0.22 -2.81 16 4 C -0.07 -2.57 9.51 22.48 0.21 -2.36 16 5 C -0.05 -2.18 5.31 -20.04 -0.11 -2.28 16 6 C -0.07 -3.26 5.47 -20.05 -0.11 -3.37 16 7 C -0.14 -7.00 8.14 22.94 0.19 -6.81 16 8 C 0.08 3.84 5.57 -21.31 -0.12 3.72 16 9 C -0.49 -24.14 9.04 23.44 0.21 -23.93 16 10 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 11 C 0.04 1.84 5.14 85.24 0.44 2.28 16 12 N -0.81 -38.58 10.96 21.82 0.24 -38.34 16 13 Si 0.98 35.22 29.59 68.60 2.03 37.25 16 14 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 15 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 16 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 17 C -0.21 -9.78 9.78 22.75 0.22 -9.56 16 18 C -0.11 -5.05 9.99 22.23 0.22 -4.83 16 19 C -0.05 -2.24 7.18 22.82 0.16 -2.07 16 20 F -0.17 -7.34 15.87 44.97 0.71 -6.63 16 21 C -0.07 -2.45 8.24 22.48 0.19 -2.26 16 22 C -0.20 -6.16 5.37 -19.90 -0.11 -6.27 16 23 C 0.52 14.60 2.81 71.23 0.20 14.80 16 24 F -0.18 -5.60 15.97 44.97 0.72 -4.88 16 25 F -0.17 -4.52 15.30 44.97 0.69 -3.83 16 26 F -0.17 -4.55 16.44 44.97 0.74 -3.82 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 29 H 0.07 1.36 5.49 -2.38 -0.01 1.35 16 30 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.13 4.68 8.04 -2.91 -0.02 4.66 16 32 H 0.12 6.09 6.15 -2.91 -0.02 6.08 16 33 H 0.29 12.45 8.30 -92.71 -0.77 11.68 16 34 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 35 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.12 4.73 6.87 -2.91 -0.02 4.71 16 Total: -1.00 -54.70 324.65 8.61 -46.09 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 1.15 Total: 22.80 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 2.34 Total: -48.65 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.24 Total: -38.34 kcal Atomic # 9 Polarization: -22.01 SS G_CDS: 2.86 Total: -19.15 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Total: -54.70 8.61 -46.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242672311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.400 kcal (2) G-P(sol) polarization free energy of solvation -54.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds