Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31668 * 119.05641 * 2 1 4 4 C 1.33209 * 120.67211 * 180.02562 * 3 2 1 5 5 C 1.48139 * 120.56199 * 180.02562 * 4 3 2 6 6 C 1.39374 * 120.17006 * 180.02562 * 5 4 3 7 7 C 1.37960 * 119.94183 * 180.02562 * 6 5 4 8 8 C 1.38481 * 120.28308 * 359.97438 * 7 6 5 9 9 C 1.38080 * 120.34133 * 0.02562 * 8 7 6 10 10 C 1.38782 * 120.05483 * 359.97438 * 9 8 7 11 11 O 1.35620 * 120.14243 * 179.97438 * 10 9 8 12 12 C 1.34814 * 117.00018 * 354.35719 * 11 10 9 13 13 H 1.08001 * 120.00223 * 354.45170 * 12 11 10 14 14 C 1.38667 * 120.00326 * 174.45948 * 12 11 10 15 15 N 1.31537 * 120.00470 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99835 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47068 * 90.00683 * 16 14 12 18 18 H 1.48502 * 109.47545 * 210.00254 * 16 14 12 19 19 H 1.48496 * 109.47441 * 330.00425 * 16 14 12 20 20 C 1.39854 * 118.87889 * 0.27603 * 4 3 2 21 21 C 1.38271 * 118.28001 * 359.46373 * 20 4 3 22 22 C 1.50703 * 120.39486 * 180.25561 * 21 20 4 23 23 F 1.39900 * 109.46958 * 185.27913 * 22 21 20 24 24 F 1.39897 * 109.47524 * 305.28390 * 22 21 20 25 25 F 1.39905 * 109.46930 * 65.28211 * 22 21 20 26 26 N 1.31813 * 119.05306 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47303 * 89.99508 * 1 2 3 28 28 H 1.08998 * 109.47657 * 209.99786 * 1 2 3 29 29 H 1.09009 * 109.47112 * 329.99790 * 1 2 3 30 30 H 1.08003 * 120.03018 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.85730 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.82783 * 179.72505 * 8 7 6 33 33 H 1.08003 * 119.96699 * 180.02562 * 9 8 7 34 34 H 0.96998 * 120.00935 * 179.97438 * 15 14 12 35 35 H 1.07994 * 120.85371 * 179.69619 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1464 1.1510 0.0000 4 6 3.4780 1.1885 -0.0005 5 6 4.1949 2.4849 0.0001 6 6 5.5884 2.5146 -0.0010 7 6 6.2513 3.7245 0.0001 8 6 5.5381 4.9116 0.0017 9 6 4.1574 4.8957 0.0028 10 6 3.4761 3.6866 0.0017 11 8 2.1200 3.6689 0.0033 12 6 1.4926 4.8561 0.1240 13 1 2.0655 5.7539 0.3035 14 6 0.1117 4.9245 0.0177 15 7 -0.5005 6.0827 0.1360 16 14 -0.8791 3.3719 -0.2933 17 1 -1.2581 2.7581 1.0048 18 1 -2.1065 3.7124 -1.0568 19 1 -0.0607 2.4106 -1.0752 20 6 4.1877 -0.0166 -0.0070 21 6 3.4709 -1.1990 -0.0011 22 6 4.1873 -2.5249 -0.0019 23 9 3.2528 -3.5597 -0.1167 24 9 5.0741 -2.5753 -1.0826 25 9 4.8999 -2.6705 1.1932 26 7 2.1470 -1.1523 -0.0005 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 6.1487 1.5913 -0.0019 31 1 7.3310 3.7460 -0.0012 32 1 6.0645 5.8546 0.0070 33 1 3.6072 5.8251 0.0036 34 1 -1.4664 6.1307 0.0613 35 1 5.2676 -0.0233 -0.0125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = -90.713883 kcal Electronic energy + Delta-G solvation = -27201.481751 eV Core-core repulsion = 22751.220931 eV Total energy + Delta-G solvation = -4450.260820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.26634 -47.80987 -47.70388 -41.03591 -39.28180 -36.80759 -34.18939 -33.74455 -32.60773 -30.26789 -29.30779 -28.62372 -27.12968 -25.40718 -24.02709 -22.66301 -21.33683 -21.08616 -18.76546 -18.66024 -18.47923 -18.09601 -17.59145 -16.67906 -15.67804 -15.46201 -15.20281 -14.89913 -14.61158 -14.50019 -14.23921 -14.18066 -14.03371 -13.94141 -13.88651 -13.86775 -13.78904 -12.99226 -12.76617 -12.67109 -12.50849 -12.42475 -11.94452 -11.73948 -11.12288 -11.07934 -10.90843 -10.74403 -10.64381 -10.09141 -9.69819 -9.63624 -9.03894 -9.02718 -8.30216 -7.53076 -6.62181 -4.24257 0.64576 0.76062 2.04782 2.11103 2.30664 3.15344 3.16393 3.36226 3.39443 3.66512 3.73723 4.06596 4.14537 4.23414 4.38926 4.44221 4.57746 4.78407 4.92942 5.01250 5.13057 5.35387 5.45069 5.57991 5.67464 5.73436 5.79153 5.95353 6.07228 6.24852 6.38536 6.50291 6.76223 6.90804 7.03557 7.09333 7.36013 7.56003 7.79553 8.22632 8.71134 9.34659 10.41991 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.005278 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.099094 B = 5304.088234 C = 7304.285772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.334 3.666 3 N -0.468 5.468 4 C 0.262 3.738 5 C -0.165 4.165 6 C -0.038 4.038 7 C -0.215 4.215 8 C -0.050 4.050 9 C -0.224 4.224 10 C 0.192 3.808 11 O -0.154 6.154 12 C -0.390 4.390 13 H 0.108 0.892 14 C 0.068 3.932 15 N -0.864 5.864 16 Si 0.900 3.100 17 H -0.270 1.270 18 H -0.288 1.288 19 H -0.234 1.234 20 C -0.199 4.199 21 C 0.086 3.914 22 C 0.526 3.474 23 F -0.161 7.161 24 F -0.170 7.170 25 F -0.170 7.170 26 N -0.510 5.510 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.283 0.717 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 -11.436 -0.542 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.067 3.933 3 N -0.183 5.183 4 C 0.118 3.882 5 C -0.168 4.168 6 C -0.058 4.058 7 C -0.234 4.234 8 C -0.069 4.069 9 C -0.243 4.243 10 C 0.133 3.867 11 O -0.053 6.053 12 C -0.465 4.465 13 H 0.125 0.875 14 C -0.138 4.138 15 N -0.499 5.499 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.157 1.157 20 C -0.222 4.222 21 C -0.061 4.061 22 C 0.470 3.530 23 F -0.142 7.142 24 F -0.151 7.151 25 F -0.151 7.151 26 N -0.226 5.226 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.038 -11.535 -0.563 13.525 hybrid contribution 0.597 -0.491 -0.078 0.777 sum 7.635 -12.026 -0.641 14.259 Atomic orbital electron populations 1.20837 0.85622 1.04407 1.04175 1.23196 0.98057 0.82254 0.89838 1.68725 1.08731 1.28661 1.12180 1.20127 0.88597 0.92248 0.87206 1.17346 0.91968 0.87745 1.19735 1.20724 0.91447 0.97972 0.95608 1.20562 0.99025 0.92099 1.11748 1.21001 0.93589 0.97681 0.94638 1.21307 0.94557 0.98414 1.10064 1.19050 0.83995 0.92108 0.91510 1.83832 1.13602 1.32966 1.74870 1.20979 0.91356 0.84775 1.49384 0.87473 1.24558 0.95894 0.98412 0.94922 1.69639 1.10873 1.24336 1.45044 0.86391 0.78713 0.82655 0.79692 1.19600 1.21444 1.15724 1.22381 1.02704 0.92482 1.04680 1.21012 0.91951 0.92396 1.00706 1.17823 0.76909 0.84269 0.73988 1.93230 1.64980 1.60460 1.95578 1.93229 1.69636 1.96708 1.55570 1.93235 1.79195 1.96170 1.46543 1.67739 1.07403 1.31682 1.15806 0.89285 0.89456 0.89270 0.86300 0.86683 0.86671 0.84365 0.90669 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.24 36.00 0.33 -1.12 16 2 C 0.33 6.14 7.64 -157.29 -1.20 4.93 16 3 N -0.47 -9.60 8.22 -7.31 -0.06 -9.66 16 4 C 0.26 4.90 6.76 -82.60 -0.56 4.35 16 5 C -0.16 -3.11 5.89 -104.74 -0.62 -3.73 16 6 C -0.04 -0.58 9.44 -39.26 -0.37 -0.95 16 7 C -0.22 -3.14 10.03 -39.59 -0.40 -3.54 16 8 C -0.05 -0.80 10.03 -39.55 -0.40 -1.20 16 9 C -0.22 -4.39 9.13 -39.44 -0.36 -4.75 16 10 C 0.19 4.14 6.65 -38.71 -0.26 3.88 16 11 O -0.15 -3.78 6.48 0.50 0.00 -3.77 16 12 C -0.39 -10.21 9.90 30.89 0.31 -9.90 16 13 H 0.11 2.85 5.53 -52.49 -0.29 2.56 16 14 C 0.07 1.80 5.49 -17.52 -0.10 1.71 16 15 N -0.86 -23.58 13.96 55.48 0.77 -22.80 16 16 Si 0.90 20.27 25.95 -169.99 -4.41 15.86 16 17 H -0.27 -5.92 6.82 56.52 0.39 -5.53 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.23 -5.15 6.28 56.52 0.35 -4.79 16 20 C -0.20 -3.09 9.10 -38.96 -0.35 -3.44 16 21 C 0.09 1.35 6.29 -82.30 -0.52 0.84 16 22 C 0.53 7.13 3.34 36.01 0.12 7.25 16 23 F -0.16 -2.28 16.90 2.25 0.04 -2.24 16 24 F -0.17 -2.16 17.17 2.25 0.04 -2.12 16 25 F -0.17 -2.19 17.29 2.25 0.04 -2.16 16 26 N -0.51 -8.82 9.76 -7.06 -0.07 -8.89 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.53 5.01 -51.92 -0.26 1.27 16 30 H 0.12 1.43 6.28 -52.48 -0.33 1.10 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.14 2.82 5.71 -52.48 -0.30 2.52 16 34 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.15 1.86 6.33 -52.49 -0.33 1.52 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -27.97 314.44 -5.68 -33.65 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.40 Total: 3.06 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.37 Total: -5.67 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.65 Total: -41.35 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: 0.00 Total: -3.77 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.12 Total: -6.52 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.41 Total: 15.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.97 -5.68 -33.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.063 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds