Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31668 * 119.05641 * 2 1 4 4 C 1.33209 * 120.67211 * 180.02562 * 3 2 1 5 5 C 1.48139 * 120.56199 * 180.02562 * 4 3 2 6 6 C 1.39374 * 120.17006 * 180.02562 * 5 4 3 7 7 C 1.37960 * 119.94183 * 180.02562 * 6 5 4 8 8 C 1.38481 * 120.28308 * 359.97438 * 7 6 5 9 9 C 1.38080 * 120.34133 * 0.02562 * 8 7 6 10 10 C 1.38782 * 120.05483 * 359.97438 * 9 8 7 11 11 O 1.35620 * 120.14243 * 179.97438 * 10 9 8 12 12 C 1.34814 * 117.00018 * 354.35719 * 11 10 9 13 13 H 1.08001 * 120.00223 * 354.45170 * 12 11 10 14 14 C 1.38667 * 120.00326 * 174.45948 * 12 11 10 15 15 N 1.31537 * 120.00470 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99835 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47068 * 90.00683 * 16 14 12 18 18 H 1.48502 * 109.47545 * 210.00254 * 16 14 12 19 19 H 1.48496 * 109.47441 * 330.00425 * 16 14 12 20 20 C 1.39854 * 118.87889 * 0.27603 * 4 3 2 21 21 C 1.38271 * 118.28001 * 359.46373 * 20 4 3 22 22 C 1.50703 * 120.39486 * 180.25561 * 21 20 4 23 23 F 1.39900 * 109.46958 * 185.27913 * 22 21 20 24 24 F 1.39897 * 109.47524 * 305.28390 * 22 21 20 25 25 F 1.39905 * 109.46930 * 65.28211 * 22 21 20 26 26 N 1.31813 * 119.05306 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47303 * 89.99508 * 1 2 3 28 28 H 1.08998 * 109.47657 * 209.99786 * 1 2 3 29 29 H 1.09009 * 109.47112 * 329.99790 * 1 2 3 30 30 H 1.08003 * 120.03018 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.85730 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.82783 * 179.72505 * 8 7 6 33 33 H 1.08003 * 119.96699 * 180.02562 * 9 8 7 34 34 H 0.96998 * 120.00935 * 179.97438 * 15 14 12 35 35 H 1.07994 * 120.85371 * 179.69619 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1464 1.1510 0.0000 4 6 3.4780 1.1885 -0.0005 5 6 4.1949 2.4849 0.0001 6 6 5.5884 2.5146 -0.0010 7 6 6.2513 3.7245 0.0001 8 6 5.5381 4.9116 0.0017 9 6 4.1574 4.8957 0.0028 10 6 3.4761 3.6866 0.0017 11 8 2.1200 3.6689 0.0033 12 6 1.4926 4.8561 0.1240 13 1 2.0655 5.7539 0.3035 14 6 0.1117 4.9245 0.0177 15 7 -0.5005 6.0827 0.1360 16 14 -0.8791 3.3719 -0.2933 17 1 -1.2581 2.7581 1.0048 18 1 -2.1065 3.7124 -1.0568 19 1 -0.0607 2.4106 -1.0752 20 6 4.1877 -0.0166 -0.0070 21 6 3.4709 -1.1990 -0.0011 22 6 4.1873 -2.5249 -0.0019 23 9 3.2528 -3.5597 -0.1167 24 9 5.0741 -2.5753 -1.0826 25 9 4.8999 -2.6705 1.1932 26 7 2.1470 -1.1523 -0.0005 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 6.1487 1.5913 -0.0019 31 1 7.3310 3.7460 -0.0012 32 1 6.0645 5.8546 0.0070 33 1 3.6072 5.8251 0.0036 34 1 -1.4664 6.1307 0.0613 35 1 5.2676 -0.0233 -0.0125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = -106.577127 kcal Electronic energy + Delta-G solvation = -27202.169633 eV Core-core repulsion = 22751.220931 eV Total energy + Delta-G solvation = -4450.948702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.32381 -48.83799 -48.77926 -42.39235 -40.79676 -38.31264 -35.55070 -35.04749 -34.46859 -31.64208 -30.76913 -29.87472 -28.38651 -27.16989 -25.36241 -23.93379 -22.80738 -22.45420 -19.98225 -19.81337 -19.70849 -19.68819 -19.00197 -18.10807 -17.00831 -16.77030 -16.54545 -16.48649 -15.73991 -15.68712 -15.58303 -15.56777 -15.43050 -15.21980 -15.21150 -14.92116 -14.91865 -14.39476 -14.32709 -14.09040 -13.94729 -13.63911 -13.37174 -13.18170 -12.58189 -12.52270 -12.44284 -12.15586 -12.03261 -11.72942 -11.41768 -10.95992 -10.88491 -10.42200 -9.66523 -9.05323 -8.51923 -6.21331 -0.70765 -0.51798 0.63056 0.73305 1.15601 1.31776 1.38016 1.61237 2.24813 2.32984 2.34115 2.54189 2.76328 2.78554 3.03681 3.12245 3.21226 3.24547 3.51512 3.73162 3.82605 4.07878 4.25416 4.28337 4.47511 4.50069 4.54388 4.65659 4.75608 4.81773 5.05972 5.16822 5.33579 5.52195 5.60988 5.68446 5.78166 5.86160 6.16239 6.82770 6.87708 7.59217 8.56843 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.005278 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.099094 B = 5304.088234 C = 7304.285772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.319 3.681 3 N -0.504 5.504 4 C 0.240 3.760 5 C -0.167 4.167 6 C -0.033 4.033 7 C -0.188 4.188 8 C -0.044 4.044 9 C -0.252 4.252 10 C 0.160 3.840 11 O -0.187 6.187 12 C -0.397 4.397 13 H 0.082 0.918 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.231 1.231 20 C -0.179 4.179 21 C 0.078 3.922 22 C 0.539 3.461 23 F -0.164 7.164 24 F -0.160 7.160 25 F -0.162 7.162 26 N -0.509 5.509 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.283 0.717 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.329 -14.582 -0.761 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 N -0.219 5.219 4 C 0.096 3.904 5 C -0.169 4.169 6 C -0.052 4.052 7 C -0.206 4.206 8 C -0.062 4.062 9 C -0.271 4.271 10 C 0.105 3.895 11 O -0.089 6.089 12 C -0.474 4.474 13 H 0.100 0.900 14 C -0.184 4.184 15 N -0.558 5.558 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.153 1.153 20 C -0.202 4.202 21 C -0.069 4.069 22 C 0.483 3.517 23 F -0.145 7.145 24 F -0.142 7.142 25 F -0.143 7.143 26 N -0.225 5.225 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.089 0.911 30 H 0.183 0.817 31 H 0.182 0.818 32 H 0.165 0.835 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.940 -14.709 -0.780 18.348 hybrid contribution -0.075 0.286 0.000 0.296 sum 10.865 -14.423 -0.780 18.074 Atomic orbital electron populations 1.20921 0.84454 1.04750 1.05056 1.23562 0.99035 0.82069 0.90154 1.68703 1.10213 1.30070 1.12945 1.20377 0.88576 0.93355 0.88117 1.17831 0.93606 0.86982 1.18526 1.21296 0.89806 1.00447 0.93693 1.21194 1.01374 0.90786 1.07275 1.21429 0.91901 1.00283 0.92609 1.21341 0.96489 0.97073 1.12233 1.19715 0.83677 0.94058 0.92010 1.83816 1.14912 1.31235 1.78940 1.20823 0.91617 0.85054 1.49861 0.90041 1.25259 0.96823 1.00956 0.95400 1.69724 1.10977 1.25963 1.49111 0.85608 0.77286 0.79528 0.79729 1.19084 1.21102 1.15343 1.22661 1.04422 0.90833 1.02243 1.21465 0.91666 0.93807 0.99946 1.17439 0.76782 0.83052 0.74437 1.93233 1.65282 1.60394 1.95626 1.93256 1.69159 1.96583 1.55162 1.93260 1.78890 1.96034 1.46165 1.67793 1.08411 1.31132 1.15201 0.88126 0.86853 0.91064 0.81681 0.81762 0.83454 0.86901 0.90718 0.78929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.24 71.23 0.66 -2.22 16 2 C 0.32 11.39 7.64 138.78 1.06 12.46 16 3 N -0.50 -20.51 8.22 -177.04 -1.46 -21.97 16 4 C 0.24 8.52 6.76 41.96 0.28 8.81 16 5 C -0.17 -5.97 5.89 -19.94 -0.12 -6.09 16 6 C -0.03 -0.85 9.44 22.48 0.21 -0.64 16 7 C -0.19 -4.41 10.03 22.26 0.22 -4.18 16 8 C -0.04 -1.27 10.03 22.29 0.22 -1.04 16 9 C -0.25 -10.11 9.13 22.36 0.20 -9.90 16 10 C 0.16 7.04 6.65 22.84 0.15 7.20 16 11 O -0.19 -9.64 6.48 -21.14 -0.14 -9.78 16 12 C -0.40 -22.54 9.90 67.92 0.67 -21.86 16 13 H 0.08 4.83 5.53 -2.91 -0.02 4.81 16 14 C 0.02 0.85 5.49 84.84 0.47 1.32 16 15 N -0.92 -54.08 13.96 21.61 0.30 -53.77 16 16 Si 0.96 44.43 25.95 68.60 1.78 46.21 16 17 H -0.27 -11.84 6.82 99.48 0.68 -11.16 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.23 -10.37 6.28 99.48 0.62 -9.74 16 20 C -0.18 -4.83 9.10 22.67 0.21 -4.63 16 21 C 0.08 2.20 6.29 42.47 0.27 2.47 16 22 C 0.54 12.50 3.34 71.24 0.24 12.74 16 23 F -0.16 -4.12 16.90 44.97 0.76 -3.36 16 24 F -0.16 -3.36 17.17 44.97 0.77 -2.59 16 25 F -0.16 -3.50 17.29 44.97 0.78 -2.72 16 26 N -0.51 -16.49 9.76 -176.26 -1.72 -18.21 16 27 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.07 2.45 5.01 -2.38 -0.01 2.44 16 30 H 0.17 2.68 6.28 -2.91 -0.02 2.66 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.11 5.04 5.71 -2.91 -0.02 5.02 16 34 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.19 3.43 6.33 -2.91 -0.02 3.41 16 Total: -1.00 -67.39 314.44 6.90 -60.49 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.07 Total: 11.27 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 4.75 Total: -5.58 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -2.87 Total: -93.95 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.14 Total: -9.78 kcal Atomic # 9 Polarization: -10.98 SS G_CDS: 2.31 Total: -8.67 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.78 Total: 46.21 kcal Total: -67.39 6.90 -60.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.082 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds