Wall clock time and date at job start Tue Mar 31 2020 13:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86796 * 120.00434 * 2 1 4 4 H 1.48497 * 109.47525 * 270.00158 * 3 2 1 5 5 H 1.48508 * 109.47001 * 30.00360 * 3 2 1 6 6 H 1.48502 * 109.47453 * 149.99653 * 3 2 1 7 7 C 1.38657 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00232 * 180.02562 * 7 2 1 9 9 O 1.34816 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.35708 * 117.00154 * 185.07828 * 9 7 2 11 11 C 1.39424 * 120.39067 * 354.78256 * 10 9 7 12 12 C 1.38224 * 118.45583 * 180.26940 * 11 10 9 13 13 C 1.39427 * 119.14526 * 359.72809 * 12 11 10 14 14 C 1.48293 * 119.64610 * 180.02562 * 13 12 11 15 15 C 1.39820 * 120.53720 * 184.75015 * 14 13 12 16 16 C 1.38402 * 118.30576 * 179.73695 * 15 14 13 17 17 C 1.38325 * 119.28597 * 0.55247 * 16 15 14 18 18 C 1.50702 * 119.47576 * 179.67668 * 17 16 15 19 19 C 1.53002 * 109.46610 * 125.02629 * 18 17 16 20 20 F 1.39903 * 109.47090 * 59.99752 * 19 18 17 21 21 F 1.39901 * 109.47302 * 179.97438 * 19 18 17 22 22 F 1.39902 * 109.47187 * 299.99987 * 19 18 17 23 23 N 1.31895 * 121.04132 * 359.70605 * 17 16 15 24 24 C 1.31737 * 121.85577 * 359.97438 * 23 17 16 25 25 N 1.32685 * 120.69870 * 0.02696 * 13 12 11 26 26 C 1.31657 * 121.68697 * 359.97438 * 25 13 12 27 27 H 0.96996 * 119.99617 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.77129 * 359.97438 * 11 10 9 29 29 H 1.08001 * 120.42350 * 179.71030 * 12 11 10 30 30 H 1.08000 * 120.85046 * 359.97438 * 15 14 13 31 31 H 1.08005 * 120.35697 * 180.25670 * 16 15 14 32 32 H 1.09003 * 109.47372 * 245.02195 * 18 17 16 33 33 H 1.08992 * 109.47310 * 5.03006 * 18 17 16 34 34 H 1.08005 * 119.70283 * 180.02562 * 24 23 17 35 35 H 1.08000 * 119.60916 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0698 -3.5042 0.1060 11 6 3.4628 -3.4459 0.1003 12 6 4.1718 -4.6278 0.2053 13 6 3.4748 -5.8300 0.3186 14 6 4.2243 -7.1045 0.4325 15 6 3.5475 -8.3279 0.4474 16 6 4.2932 -9.4893 0.5499 17 6 5.6704 -9.4029 0.6451 18 6 6.4861 -10.6645 0.7643 19 6 7.5406 -10.6965 -0.3439 20 9 8.3806 -9.5846 -0.2205 21 9 8.2982 -11.8674 -0.2331 22 9 6.9075 -10.6665 -1.5911 23 7 6.2810 -8.2339 0.6338 24 6 5.6143 -7.1022 0.5317 25 7 2.1481 -5.8458 0.3254 26 6 1.4428 -4.7384 0.2270 27 1 -0.4849 0.8400 -0.0004 28 1 3.9759 -2.4998 0.0109 29 1 5.2518 -4.6201 0.1995 30 1 2.4704 -8.3658 0.3769 31 1 3.8047 -10.4525 0.5603 32 1 6.9794 -10.6879 1.7360 33 1 5.8316 -11.5308 0.6681 34 1 6.1498 -6.1643 0.5255 35 1 0.3641 -4.7902 0.2366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244292841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:21 Heat of formation + Delta-G solvation = -115.106242 kcal Electronic energy + Delta-G solvation = -25479.028482 eV Core-core repulsion = 21027.709930 eV Total energy + Delta-G solvation = -4451.318552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.15331 -47.72116 -47.54449 -40.43914 -39.48949 -37.39823 -34.04426 -32.71171 -32.43382 -31.58262 -30.48472 -27.96710 -25.78917 -24.42199 -23.98672 -22.73555 -22.09141 -21.15411 -18.65974 -18.56960 -18.34427 -17.71332 -17.55410 -16.55490 -16.36880 -15.72099 -15.21343 -14.72936 -14.58352 -14.50284 -14.36744 -14.15668 -14.07544 -13.98024 -13.81366 -13.76819 -13.71467 -13.23516 -13.11612 -12.87149 -12.58425 -12.43709 -12.14153 -11.94561 -11.91462 -11.40304 -11.22919 -10.67224 -9.99000 -9.88205 -9.52893 -9.38426 -9.22035 -8.97067 -8.88206 -7.38830 -6.76694 -4.31783 0.67913 1.29763 1.88920 2.13898 2.68049 2.97169 2.98198 3.03227 3.57505 3.64960 3.72161 3.83894 3.97337 4.23720 4.48726 4.56256 4.64587 4.83468 4.86049 4.97165 5.00681 5.04110 5.17218 5.24529 5.41604 5.60500 5.72578 5.78886 5.87424 6.12990 6.30580 6.42715 6.57704 6.72849 6.83499 7.03071 7.26977 7.65527 7.89094 8.55014 8.67161 9.29399 10.38918 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.002234 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.315089 B =12528.650683 C =13150.711786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.043 3.957 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.153 6.153 10 C 0.110 3.890 11 C -0.203 4.203 12 C -0.093 4.093 13 C 0.029 3.971 14 C -0.036 4.036 15 C -0.061 4.061 16 C -0.148 4.148 17 C 0.083 3.917 18 C -0.106 4.106 19 C 0.458 3.542 20 F -0.167 7.167 21 F -0.189 7.189 22 F -0.184 7.184 23 N -0.464 5.464 24 C 0.099 3.901 25 N -0.429 5.429 26 C 0.037 3.963 27 H 0.276 0.724 28 H 0.140 0.860 29 H 0.123 0.877 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -16.951 1.577 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.052 6.052 10 C 0.051 3.949 11 C -0.229 4.229 12 C -0.113 4.113 13 C -0.105 4.105 14 C -0.039 4.039 15 C -0.087 4.087 16 C -0.168 4.168 17 C -0.055 4.055 18 C -0.145 4.145 19 C 0.403 3.597 20 F -0.148 7.148 21 F -0.171 7.171 22 F -0.166 7.166 23 N -0.172 5.172 24 C -0.060 4.060 25 N -0.139 5.139 26 C -0.128 4.128 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.177 0.823 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.745 -17.461 1.667 20.570 hybrid contribution 0.128 1.703 -0.337 1.741 sum 10.873 -15.759 1.331 19.192 Atomic orbital electron populations 1.70025 1.06154 1.28553 1.43059 1.25420 0.95958 0.99238 0.95779 0.85618 0.79010 0.79298 0.79060 1.19511 1.19910 1.18883 1.21474 0.92115 0.80474 1.52839 0.88562 1.83950 1.34522 1.11561 1.75178 1.20553 0.91043 0.89343 0.93984 1.21462 0.93842 0.99040 1.08545 1.21683 0.99892 0.92086 0.97595 1.18803 0.89474 0.90913 1.11321 1.19587 0.93686 0.92839 0.97754 1.21701 1.01415 0.90678 0.94939 1.21800 0.93757 0.99686 1.01556 1.20352 0.91370 0.92294 1.01494 1.21667 0.96465 0.97799 0.98557 1.20326 0.82509 0.73594 0.83244 1.93256 1.72936 1.52764 1.95828 1.93177 1.78293 1.49498 1.96132 1.93193 1.81904 1.96176 1.45308 1.67368 1.40550 0.97762 1.11525 1.22764 0.90497 0.96037 0.96715 1.67267 1.07055 1.30015 1.09525 1.21742 0.99714 0.85203 1.06176 0.91366 0.84242 0.85883 0.83544 0.84703 0.85885 0.86111 0.82294 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.89 13.67 55.48 0.76 -22.13 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.95 18.81 29.55 -169.99 -5.02 13.79 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.39 -10.02 9.50 30.89 0.29 -9.73 16 8 H 0.10 2.24 5.25 -52.48 -0.28 1.96 16 9 O -0.15 -3.98 9.76 0.22 0.00 -3.97 16 10 C 0.11 2.43 6.67 -38.87 -0.26 2.17 16 11 C -0.20 -4.02 9.25 -39.15 -0.36 -4.38 16 12 C -0.09 -1.59 9.46 -39.14 -0.37 -1.96 16 13 C 0.03 0.51 6.73 -82.92 -0.56 -0.05 16 14 C -0.04 -0.54 5.89 -104.76 -0.62 -1.16 16 15 C -0.06 -0.82 9.69 -38.93 -0.38 -1.20 16 16 C -0.15 -1.62 9.70 -39.49 -0.38 -2.00 16 17 C 0.08 0.95 5.92 -82.53 -0.49 0.46 16 18 C -0.11 -0.86 5.69 -27.88 -0.16 -1.02 16 19 C 0.46 4.73 3.15 37.16 0.12 4.85 16 20 F -0.17 -2.09 15.95 2.25 0.04 -2.05 16 21 F -0.19 -1.85 17.32 2.25 0.04 -1.82 16 22 F -0.18 -2.19 17.02 2.25 0.04 -2.15 16 23 N -0.46 -6.34 8.88 -9.18 -0.08 -6.42 16 24 C 0.10 1.38 10.59 -17.18 -0.18 1.20 16 25 N -0.43 -8.14 9.51 -9.61 -0.09 -8.23 16 26 C 0.04 0.74 11.14 -17.36 -0.19 0.55 16 27 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.14 2.66 5.75 -52.49 -0.30 2.36 16 29 H 0.12 1.69 6.24 -52.49 -0.33 1.36 16 30 H 0.15 1.92 7.64 -52.49 -0.40 1.52 16 31 H 0.14 1.02 7.94 -52.48 -0.42 0.60 16 32 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 0.61 7.86 -51.93 -0.41 0.20 16 34 H 0.16 1.94 6.23 -52.48 -0.33 1.61 16 35 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -29.37 323.25 -5.52 -34.89 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -2.44 Total: 4.48 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.63 Total: -11.27 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.59 Total: -36.78 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: 0.00 Total: -3.97 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.11 Total: -6.01 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.37 -5.52 -34.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244292841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.215 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds