Wall clock time and date at job start Tue Mar 31 2020 13:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86796 * 120.00434 * 2 1 4 4 H 1.48497 * 109.47525 * 270.00158 * 3 2 1 5 5 H 1.48508 * 109.47001 * 30.00360 * 3 2 1 6 6 H 1.48502 * 109.47453 * 149.99653 * 3 2 1 7 7 C 1.38657 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00232 * 180.02562 * 7 2 1 9 9 O 1.34816 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.35708 * 117.00154 * 185.07828 * 9 7 2 11 11 C 1.39424 * 120.39067 * 354.78256 * 10 9 7 12 12 C 1.38224 * 118.45583 * 180.26940 * 11 10 9 13 13 C 1.39427 * 119.14526 * 359.72809 * 12 11 10 14 14 C 1.48293 * 119.64610 * 180.02562 * 13 12 11 15 15 C 1.39820 * 120.53720 * 184.75015 * 14 13 12 16 16 C 1.38402 * 118.30576 * 179.73695 * 15 14 13 17 17 C 1.38325 * 119.28597 * 0.55247 * 16 15 14 18 18 C 1.50702 * 119.47576 * 179.67668 * 17 16 15 19 19 C 1.53002 * 109.46610 * 125.02629 * 18 17 16 20 20 F 1.39903 * 109.47090 * 59.99752 * 19 18 17 21 21 F 1.39901 * 109.47302 * 179.97438 * 19 18 17 22 22 F 1.39902 * 109.47187 * 299.99987 * 19 18 17 23 23 N 1.31895 * 121.04132 * 359.70605 * 17 16 15 24 24 C 1.31737 * 121.85577 * 359.97438 * 23 17 16 25 25 N 1.32685 * 120.69870 * 0.02696 * 13 12 11 26 26 C 1.31657 * 121.68697 * 359.97438 * 25 13 12 27 27 H 0.96996 * 119.99617 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.77129 * 359.97438 * 11 10 9 29 29 H 1.08001 * 120.42350 * 179.71030 * 12 11 10 30 30 H 1.08000 * 120.85046 * 359.97438 * 15 14 13 31 31 H 1.08005 * 120.35697 * 180.25670 * 16 15 14 32 32 H 1.09003 * 109.47372 * 245.02195 * 18 17 16 33 33 H 1.08992 * 109.47310 * 5.03006 * 18 17 16 34 34 H 1.08005 * 119.70283 * 180.02562 * 24 23 17 35 35 H 1.08000 * 119.60916 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0698 -3.5042 0.1060 11 6 3.4628 -3.4459 0.1003 12 6 4.1718 -4.6278 0.2053 13 6 3.4748 -5.8300 0.3186 14 6 4.2243 -7.1045 0.4325 15 6 3.5475 -8.3279 0.4474 16 6 4.2932 -9.4893 0.5499 17 6 5.6704 -9.4029 0.6451 18 6 6.4861 -10.6645 0.7643 19 6 7.5406 -10.6965 -0.3439 20 9 8.3806 -9.5846 -0.2205 21 9 8.2982 -11.8674 -0.2331 22 9 6.9075 -10.6665 -1.5911 23 7 6.2810 -8.2339 0.6338 24 6 5.6143 -7.1022 0.5317 25 7 2.1481 -5.8458 0.3254 26 6 1.4428 -4.7384 0.2270 27 1 -0.4849 0.8400 -0.0004 28 1 3.9759 -2.4998 0.0109 29 1 5.2518 -4.6201 0.1995 30 1 2.4704 -8.3658 0.3769 31 1 3.8047 -10.4525 0.5603 32 1 6.9794 -10.6879 1.7360 33 1 5.8316 -11.5308 0.6681 34 1 6.1498 -6.1643 0.5255 35 1 0.3641 -4.7902 0.2366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244292841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:21 Heat of formation + Delta-G solvation = -132.219937 kcal Electronic energy + Delta-G solvation = -25479.770587 eV Core-core repulsion = 21027.709930 eV Total energy + Delta-G solvation = -4452.060658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.97315 -48.52823 -48.41195 -41.68037 -40.88357 -39.01053 -35.09489 -34.37684 -33.56400 -33.02069 -31.71063 -29.25602 -27.45895 -25.54186 -25.16011 -24.02851 -23.30518 -22.38636 -20.04610 -19.47456 -19.40517 -19.14738 -18.54533 -17.84397 -17.61611 -16.88763 -16.46046 -16.30134 -15.95136 -15.49400 -15.36513 -15.33227 -15.18782 -15.12740 -14.90188 -14.62369 -14.60605 -14.58278 -14.20823 -14.15947 -13.97492 -13.62481 -13.40402 -13.29407 -12.89124 -12.75594 -12.64004 -12.15937 -11.73762 -11.12243 -10.85358 -10.62295 -10.60139 -10.44992 -10.25245 -8.92279 -8.56056 -6.22908 -0.47168 0.29008 0.32510 0.74121 1.36297 1.44956 1.53336 1.89390 2.11972 2.56958 2.80630 2.86878 3.02582 3.10038 3.16226 3.24136 3.37561 3.47922 3.71204 3.82817 3.94632 4.01862 4.15417 4.19899 4.39791 4.41949 4.45779 4.59903 4.70833 4.86656 4.94516 5.09769 5.23065 5.28288 5.41392 5.63074 5.74171 5.88535 6.86533 6.88503 6.99252 7.58259 8.64964 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.002234 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.315089 B =12528.650683 C =13150.711786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.015 4.015 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.418 4.418 8 H 0.109 0.891 9 O -0.206 6.206 10 C 0.081 3.919 11 C -0.198 4.198 12 C -0.094 4.094 13 C 0.055 3.945 14 C -0.071 4.071 15 C -0.062 4.062 16 C -0.140 4.140 17 C 0.091 3.909 18 C -0.102 4.102 19 C 0.454 3.546 20 F -0.183 7.183 21 F -0.186 7.186 22 F -0.196 7.196 23 N -0.483 5.483 24 C 0.104 3.896 25 N -0.437 5.437 26 C 0.028 3.972 27 H 0.277 0.723 28 H 0.145 0.855 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.177 0.823 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.492 -19.988 2.138 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.215 4.215 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.493 4.493 8 H 0.126 0.874 9 O -0.110 6.110 10 C 0.026 3.974 11 C -0.224 4.224 12 C -0.114 4.114 13 C -0.081 4.081 14 C -0.074 4.074 15 C -0.088 4.088 16 C -0.159 4.159 17 C -0.047 4.047 18 C -0.140 4.140 19 C 0.400 3.600 20 F -0.165 7.165 21 F -0.167 7.167 22 F -0.177 7.177 23 N -0.192 5.192 24 C -0.055 4.055 25 N -0.146 5.146 26 C -0.134 4.134 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.181 0.819 30 H 0.164 0.836 31 H 0.194 0.806 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.190 0.810 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 13.570 -20.553 2.230 24.730 hybrid contribution -0.440 1.975 -0.478 2.079 sum 13.130 -18.579 1.752 22.817 Atomic orbital electron populations 1.70160 1.08077 1.29331 1.46916 1.26622 0.96830 1.02803 0.95244 0.84570 0.77948 0.74324 0.79343 1.18780 1.19685 1.17353 1.21917 0.92845 0.80958 1.53627 0.87377 1.83945 1.35664 1.12389 1.78971 1.20968 0.92319 0.89183 0.94915 1.21696 0.93071 1.00405 1.07227 1.22070 1.01903 0.90777 0.96614 1.19463 0.89208 0.92587 1.06879 1.19546 0.94250 0.92169 1.01420 1.21882 1.01729 0.91090 0.94147 1.22190 0.93453 1.00551 0.99741 1.21007 0.92237 0.92841 0.98619 1.21881 0.96181 0.97364 0.98573 1.20670 0.82787 0.73170 0.83410 1.93227 1.73625 1.53737 1.95881 1.93186 1.78319 1.49158 1.96086 1.93176 1.82024 1.96203 1.46321 1.67489 1.40892 0.98373 1.12407 1.22955 0.89933 0.97010 0.95602 1.67375 1.07882 1.29155 1.10165 1.21893 1.00300 0.85129 1.06039 0.91418 0.83777 0.81872 0.83626 0.80566 0.83694 0.82184 0.81036 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.42 13.67 21.61 0.30 -52.13 16 2 C -0.02 -0.81 5.49 84.83 0.47 -0.34 16 3 Si 1.02 39.74 29.55 68.60 2.03 41.77 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 7 C -0.42 -22.40 9.50 67.92 0.64 -21.75 16 8 H 0.11 5.20 5.25 -2.91 -0.02 5.18 16 9 O -0.21 -11.45 9.76 -22.12 -0.22 -11.67 16 10 C 0.08 3.74 6.67 22.73 0.15 3.89 16 11 C -0.20 -7.83 9.25 22.55 0.21 -7.62 16 12 C -0.09 -3.07 9.46 22.55 0.21 -2.86 16 13 C 0.05 1.85 6.73 41.98 0.28 2.13 16 14 C -0.07 -1.96 5.89 -19.95 -0.12 -2.08 16 15 C -0.06 -1.47 9.69 22.69 0.22 -1.25 16 16 C -0.14 -2.39 9.70 22.33 0.22 -2.17 16 17 C 0.09 1.68 5.92 42.57 0.25 1.93 16 18 C -0.10 -1.13 5.69 29.85 0.17 -0.96 16 19 C 0.45 7.77 3.15 71.98 0.23 7.99 16 20 F -0.18 -4.11 15.95 44.97 0.72 -3.39 16 21 F -0.19 -3.02 17.32 44.97 0.78 -2.24 16 22 F -0.20 -4.03 17.02 44.97 0.77 -3.27 16 23 N -0.48 -11.47 8.88 -182.96 -1.62 -13.10 16 24 C 0.10 2.57 10.59 84.97 0.90 3.47 16 25 N -0.44 -16.36 9.51 -184.31 -1.75 -18.12 16 26 C 0.03 1.18 11.14 84.89 0.95 2.13 16 27 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.14 5.51 5.75 -2.91 -0.02 5.49 16 29 H 0.16 3.94 6.24 -2.91 -0.02 3.92 16 30 H 0.15 3.45 7.64 -2.91 -0.02 3.43 16 31 H 0.18 1.54 7.94 -2.91 -0.02 1.52 16 32 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.16 0.56 7.86 -2.39 -0.02 0.54 16 34 H 0.17 3.61 6.23 -2.91 -0.02 3.59 16 35 H 0.16 6.26 8.06 -2.91 -0.02 6.24 16 Total: -1.00 -68.73 323.25 6.95 -61.78 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.18 Total: 17.86 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 4.78 Total: -17.50 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -3.08 Total: -83.34 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.22 Total: -11.67 kcal Atomic # 9 Polarization: -11.16 SS G_CDS: 2.26 Total: -8.90 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -68.73 6.95 -61.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244292841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.440 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds