Wall clock time and date at job start Tue Mar 31 2020 15:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47219 * 258.31888 * 3 2 1 5 5 C 1.36941 * 119.99458 * 272.43020 * 4 3 2 6 6 H 1.08004 * 119.99234 * 187.26144 * 5 4 3 7 7 C 1.38805 * 120.00557 * 7.25959 * 5 4 3 8 8 N 1.31627 * 119.99858 * 22.58439 * 7 5 4 9 9 Si 1.86792 * 120.00266 * 202.58420 * 7 5 4 10 10 H 1.48506 * 109.47315 * 60.00132 * 9 7 5 11 11 H 1.48502 * 109.47166 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47121 * 299.99877 * 9 7 5 13 13 S 1.65596 * 120.00230 * 92.43081 * 4 3 2 14 14 O 1.42102 * 106.40186 * 156.46253 * 13 4 3 15 15 O 1.42098 * 106.40175 * 23.53900 * 13 4 3 16 16 C 1.76206 * 107.21500 * 269.99952 * 13 4 3 17 17 C 1.38257 * 120.39025 * 269.71786 * 16 13 4 18 18 N 1.31840 * 120.88689 * 179.75321 * 17 16 13 19 19 C 1.31845 * 121.77836 * 0.53981 * 18 17 16 20 20 C 1.38705 * 120.68571 * 359.72795 * 19 18 17 21 21 O 1.35911 * 120.47216 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99711 * 174.37669 * 21 20 19 23 23 C 1.52994 * 109.47446 * 85.64134 * 22 21 20 24 24 C 1.52999 * 109.46862 * 205.64429 * 22 21 20 25 25 C 1.38535 * 120.38759 * 90.00190 * 16 13 4 26 26 H 4.40640 * 5.51562 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47431 * 138.31592 * 3 2 1 28 28 H 1.09004 * 109.47189 * 18.31638 * 3 2 1 29 29 H 0.96997 * 120.00161 * 180.02562 * 8 7 5 30 30 H 1.08000 * 119.55179 * 0.02685 * 17 16 13 31 31 H 1.08007 * 119.65367 * 179.74863 * 19 18 17 32 32 H 1.09005 * 109.47121 * 325.63923 * 22 21 20 33 33 H 1.09005 * 109.47133 * 59.99796 * 23 22 21 34 34 H 1.09000 * 109.47601 * 179.97438 * 23 22 21 35 35 H 1.08994 * 109.47404 * 300.00562 * 23 22 21 36 36 H 1.08998 * 109.47587 * 59.99966 * 24 22 21 37 37 H 1.09005 * 109.47364 * 179.97438 * 24 22 21 38 38 H 1.08998 * 109.47199 * 299.99735 * 24 22 21 39 39 H 1.07997 * 120.81624 * 359.95260 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2805 1.3526 5 6 3.3144 1.5751 1.7612 6 1 3.7834 1.7808 2.7121 7 6 2.8944 2.6228 0.9534 8 7 1.9595 2.4224 0.0488 9 14 3.6560 4.3171 1.1499 10 1 5.1176 4.2349 0.8998 11 1 3.0395 5.2529 0.1756 12 1 3.4169 4.8102 2.5300 13 16 3.4681 -0.9685 2.3874 14 8 4.3973 -0.4650 3.3374 15 8 3.7264 -2.1049 1.5744 16 6 1.9879 -1.3189 3.2767 17 6 1.7231 -0.6799 4.4737 18 7 0.6164 -0.9310 5.1448 19 6 -0.2742 -1.8024 4.7138 20 6 -0.0764 -2.4872 3.5240 21 8 -0.9971 -3.3850 3.0841 22 6 -0.7806 -3.9561 1.7922 23 6 0.1436 -5.1687 1.9188 24 6 -2.1203 -4.3956 1.1980 25 6 1.0784 -2.2424 2.7874 26 1 -1.0501 0.0002 0.0000 27 1 3.0090 0.7683 -0.6834 28 1 3.0098 -0.9748 -0.3230 29 1 1.6662 3.1544 -0.5160 30 1 2.4304 0.0380 4.8621 31 1 -1.1673 -1.9847 5.2933 32 1 -0.3196 -3.2144 1.1397 33 1 -0.3174 -5.9103 2.5713 34 1 0.3084 -5.6046 0.9335 35 1 1.0979 -4.8556 2.3422 36 1 -2.7787 -3.5317 1.1076 37 1 -1.9553 -4.8308 0.2123 38 1 -2.5813 -5.1372 1.8504 39 1 1.2611 -2.7593 1.8570 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329224627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:22 Heat of formation + Delta-G solvation = -2.730149 kcal Electronic energy + Delta-G solvation = -26320.079906 eV Core-core repulsion = 22550.935039 eV Total energy + Delta-G solvation = -3769.144867 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.33655 -38.18012 -36.48625 -35.97642 -34.55717 -33.28827 -32.21192 -31.86861 -31.27742 -29.77090 -27.36614 -26.75526 -24.03176 -23.90686 -23.20834 -20.97591 -18.91088 -18.43930 -17.91992 -16.91096 -16.61681 -16.53739 -16.40985 -15.58626 -15.34462 -14.78684 -14.47812 -14.22580 -13.93986 -13.49481 -13.44234 -13.29247 -12.84452 -12.60173 -12.46575 -12.32464 -12.12684 -11.92994 -11.81075 -11.37153 -11.09407 -11.04747 -10.92628 -10.86873 -10.77118 -10.59845 -10.53455 -10.40308 -9.89224 -9.64012 -9.33003 -9.12748 -8.94247 -8.44339 -8.14715 -6.75244 -4.11108 1.13289 1.59131 1.62212 3.03128 3.07313 3.13733 3.20922 3.61977 3.88375 4.00728 4.03110 4.44235 4.56140 4.72025 4.84524 4.84747 4.93474 4.98698 5.06486 5.21224 5.43063 5.44388 5.45180 5.57415 5.62949 5.67888 5.75509 5.94075 5.98794 6.10646 6.15869 6.26103 6.40969 6.61128 6.76400 6.85410 7.00579 7.12516 7.45376 8.01312 8.23729 8.39241 8.74429 8.82641 10.15469 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.005228 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.286346 B = 5354.730605 C = 5758.185585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.112 4.112 3 C 0.232 3.768 4 N -0.787 5.787 5 C -0.233 4.233 6 H 0.127 0.873 7 C 0.027 3.973 8 N -0.814 5.814 9 Si 0.936 3.064 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.266 1.266 13 S 2.515 3.485 14 O -0.978 6.978 15 O -0.996 6.996 16 C -0.667 4.667 17 C 0.146 3.854 18 N -0.467 5.467 19 C 0.094 3.906 20 C 0.054 3.946 21 O -0.308 6.308 22 C 0.071 3.929 23 C -0.181 4.181 24 C -0.145 4.145 25 C -0.072 4.072 26 H 0.195 0.805 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.280 0.720 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 -6.368 -1.348 8.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.115 4.115 3 C 0.107 3.893 4 N -0.608 5.608 5 C -0.383 4.383 6 H 0.144 0.856 7 C -0.186 4.186 8 N -0.452 5.452 9 Si 0.761 3.239 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.191 1.191 13 S 2.612 3.388 14 O -0.968 6.968 15 O -0.986 6.986 16 C -0.744 4.744 17 C -0.012 4.012 18 N -0.176 5.176 19 C -0.064 4.064 20 C 0.007 3.993 21 O -0.221 6.221 22 C 0.015 3.985 23 C -0.239 4.239 24 C -0.202 4.202 25 C -0.099 4.099 26 H 0.212 0.788 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.184 0.816 31 H 0.175 0.825 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.127 -6.700 -0.375 8.445 hybrid contribution -0.825 0.449 -0.608 1.119 sum -5.952 -6.251 -0.983 8.687 Atomic orbital electron populations 1.24212 0.95296 1.07214 1.01842 1.23429 0.94572 0.94759 0.98742 1.18611 0.83812 1.01322 0.85596 1.55643 1.70640 1.17971 1.16520 1.20285 1.29542 0.80573 1.07852 0.85574 1.25709 0.95170 1.00797 0.96968 1.70198 1.22068 1.33744 1.19225 0.85805 0.79783 0.79364 0.78983 1.18946 1.20500 1.19076 1.12797 0.78545 0.74473 0.72981 1.93356 1.61752 1.79373 1.62317 1.93330 1.85912 1.51779 1.67552 1.33450 1.27335 1.04057 1.09579 1.22323 0.93171 0.95858 0.89824 1.67743 1.02630 1.14078 1.33129 1.22212 0.98919 0.92725 0.92551 1.20132 0.90164 0.92645 0.96400 1.86069 1.46396 1.54679 1.34994 1.22495 0.97617 0.95214 0.83174 1.22389 1.00203 0.98162 1.03113 1.21825 0.95501 1.02208 1.00661 1.21317 0.92245 0.96794 0.99571 0.78751 0.86052 0.90051 0.90931 0.81610 0.82517 0.90459 0.91562 0.90758 0.91657 0.91628 0.90482 0.91642 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.27 19.25 29.55 0.57 -4.71 16 2 C -0.11 -2.38 11.34 -37.13 -0.42 -2.80 16 3 C 0.23 4.90 5.44 -6.83 -0.04 4.87 16 4 N -0.79 -17.81 2.88 -62.77 -0.18 -17.99 16 5 C -0.23 -5.38 9.50 -15.06 -0.14 -5.52 16 6 H 0.13 2.87 7.19 -52.48 -0.38 2.49 16 7 C 0.03 0.59 4.99 -17.43 -0.09 0.51 16 8 N -0.81 -18.31 8.87 55.49 0.49 -17.82 16 9 Si 0.94 17.51 29.61 -169.99 -5.03 12.48 16 10 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 11 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 12 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 13 S 2.51 57.08 5.67 -107.50 -0.61 56.47 16 14 O -0.98 -24.00 16.07 -57.17 -0.92 -24.92 16 15 O -1.00 -23.43 15.93 -57.17 -0.91 -24.34 16 16 C -0.67 -14.17 5.99 -39.46 -0.24 -14.41 16 17 C 0.15 3.04 10.68 -17.54 -0.19 2.85 16 18 N -0.47 -9.19 10.36 -13.12 -0.14 -9.32 16 19 C 0.09 1.68 11.14 -17.37 -0.19 1.48 16 20 C 0.05 0.97 6.62 -39.07 -0.26 0.71 16 21 O -0.31 -4.83 9.81 -19.46 -0.19 -5.02 16 22 C 0.07 0.94 2.84 -26.73 -0.08 0.87 16 23 C -0.18 -2.20 9.20 37.15 0.34 -1.86 16 24 C -0.14 -1.47 9.56 37.16 0.36 -1.11 16 25 C -0.07 -1.40 7.84 -39.14 -0.31 -1.71 16 26 H 0.20 3.24 7.80 -54.09 -0.42 2.82 16 27 H 0.12 2.57 6.30 -51.93 -0.33 2.25 16 28 H 0.08 1.60 6.96 -51.93 -0.36 1.24 16 29 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 30 H 0.17 3.29 7.62 -52.49 -0.40 2.89 16 31 H 0.16 2.28 8.06 -52.48 -0.42 1.85 16 32 H 0.08 1.11 6.31 -51.93 -0.33 0.78 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.91 7.00 -51.93 -0.36 0.55 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.14 2.69 5.27 -52.49 -0.28 2.41 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -28.29 346.47 -7.48 -35.76 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.53 Total: 10.30 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -0.68 Total: -20.83 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.18 Total: -45.12 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -2.02 Total: -54.28 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: 57.08 SS G_CDS: -0.61 Total: 56.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.29 -7.48 -35.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329224627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.035 kcal (2) G-P(sol) polarization free energy of solvation -28.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds