Wall clock time and date at job start Tue Mar 31 2020 15:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47219 * 258.31888 * 3 2 1 5 5 C 1.36941 * 119.99458 * 272.43020 * 4 3 2 6 6 H 1.08004 * 119.99234 * 187.26144 * 5 4 3 7 7 C 1.38805 * 120.00557 * 7.25959 * 5 4 3 8 8 N 1.31627 * 119.99858 * 22.58439 * 7 5 4 9 9 Si 1.86792 * 120.00266 * 202.58420 * 7 5 4 10 10 H 1.48506 * 109.47315 * 60.00132 * 9 7 5 11 11 H 1.48502 * 109.47166 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47121 * 299.99877 * 9 7 5 13 13 S 1.65596 * 120.00230 * 92.43081 * 4 3 2 14 14 O 1.42102 * 106.40186 * 156.46253 * 13 4 3 15 15 O 1.42098 * 106.40175 * 23.53900 * 13 4 3 16 16 C 1.76206 * 107.21500 * 269.99952 * 13 4 3 17 17 C 1.38257 * 120.39025 * 269.71786 * 16 13 4 18 18 N 1.31840 * 120.88689 * 179.75321 * 17 16 13 19 19 C 1.31845 * 121.77836 * 0.53981 * 18 17 16 20 20 C 1.38705 * 120.68571 * 359.72795 * 19 18 17 21 21 O 1.35911 * 120.47216 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99711 * 174.37669 * 21 20 19 23 23 C 1.52994 * 109.47446 * 85.64134 * 22 21 20 24 24 C 1.52999 * 109.46862 * 205.64429 * 22 21 20 25 25 C 1.38535 * 120.38759 * 90.00190 * 16 13 4 26 26 H 4.40640 * 5.51562 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47431 * 138.31592 * 3 2 1 28 28 H 1.09004 * 109.47189 * 18.31638 * 3 2 1 29 29 H 0.96997 * 120.00161 * 180.02562 * 8 7 5 30 30 H 1.08000 * 119.55179 * 0.02685 * 17 16 13 31 31 H 1.08007 * 119.65367 * 179.74863 * 19 18 17 32 32 H 1.09005 * 109.47121 * 325.63923 * 22 21 20 33 33 H 1.09005 * 109.47133 * 59.99796 * 23 22 21 34 34 H 1.09000 * 109.47601 * 179.97438 * 23 22 21 35 35 H 1.08994 * 109.47404 * 300.00562 * 23 22 21 36 36 H 1.08998 * 109.47587 * 59.99966 * 24 22 21 37 37 H 1.09005 * 109.47364 * 179.97438 * 24 22 21 38 38 H 1.08998 * 109.47199 * 299.99735 * 24 22 21 39 39 H 1.07997 * 120.81624 * 359.95260 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2805 1.3526 5 6 3.3144 1.5751 1.7612 6 1 3.7834 1.7808 2.7121 7 6 2.8944 2.6228 0.9534 8 7 1.9595 2.4224 0.0488 9 14 3.6560 4.3171 1.1499 10 1 5.1176 4.2349 0.8998 11 1 3.0395 5.2529 0.1756 12 1 3.4169 4.8102 2.5300 13 16 3.4681 -0.9685 2.3874 14 8 4.3973 -0.4650 3.3374 15 8 3.7264 -2.1049 1.5744 16 6 1.9879 -1.3189 3.2767 17 6 1.7231 -0.6799 4.4737 18 7 0.6164 -0.9310 5.1448 19 6 -0.2742 -1.8024 4.7138 20 6 -0.0764 -2.4872 3.5240 21 8 -0.9971 -3.3850 3.0841 22 6 -0.7806 -3.9561 1.7922 23 6 0.1436 -5.1687 1.9188 24 6 -2.1203 -4.3956 1.1980 25 6 1.0784 -2.2424 2.7874 26 1 -1.0501 0.0002 0.0000 27 1 3.0090 0.7683 -0.6834 28 1 3.0098 -0.9748 -0.3230 29 1 1.6662 3.1544 -0.5160 30 1 2.4304 0.0380 4.8621 31 1 -1.1673 -1.9847 5.2933 32 1 -0.3196 -3.2144 1.1397 33 1 -0.3174 -5.9103 2.5713 34 1 0.3084 -5.6046 0.9335 35 1 1.0979 -4.8556 2.3422 36 1 -2.7787 -3.5317 1.1076 37 1 -1.9553 -4.8308 0.2123 38 1 -2.5813 -5.1372 1.8504 39 1 1.2611 -2.7593 1.8570 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329224627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:21 Heat of formation + Delta-G solvation = -20.298577 kcal Electronic energy + Delta-G solvation = -26320.841731 eV Core-core repulsion = 22550.935039 eV Total energy + Delta-G solvation = -3769.906692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.72910 -39.51329 -38.17973 -37.81916 -36.41906 -34.35716 -33.87626 -33.40500 -32.94250 -31.19590 -28.43089 -28.24976 -25.71669 -25.35797 -24.68573 -22.12999 -20.52864 -20.02391 -19.51559 -18.62597 -18.25201 -17.97338 -17.87304 -17.15651 -16.60999 -16.44940 -16.11692 -15.45764 -15.28455 -15.13697 -15.06838 -14.63814 -14.26923 -14.01926 -13.67142 -13.55965 -13.40777 -13.14956 -13.13048 -12.92633 -12.74558 -12.69204 -12.61518 -12.34364 -12.32326 -12.02732 -11.97510 -11.80654 -11.53013 -11.22359 -10.94353 -10.71722 -10.54664 -10.12533 -9.56895 -8.43740 -5.87479 -0.43466 -0.11563 0.10566 1.52106 1.57198 1.65441 1.97697 1.98947 2.30960 2.39940 2.49675 2.76019 2.86516 3.19285 3.38644 3.51937 3.61672 3.75564 3.87215 3.89361 3.93275 4.10095 4.15676 4.31466 4.50637 4.63149 4.70000 4.75492 4.80623 4.84558 4.85553 4.93620 5.13732 5.20178 5.22977 5.31390 5.36048 5.46474 6.12750 6.28632 6.65923 6.72648 7.08716 7.15824 8.46628 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.005228 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.286346 B = 5354.730605 C = 5758.185585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.144 4.144 3 C 0.231 3.769 4 N -0.792 5.792 5 C -0.259 4.259 6 H 0.121 0.879 7 C 0.001 3.999 8 N -0.827 5.827 9 Si 0.993 3.007 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.267 1.267 13 S 2.523 3.477 14 O -1.004 7.004 15 O -1.011 7.011 16 C -0.683 4.683 17 C 0.129 3.871 18 N -0.473 5.473 19 C 0.097 3.903 20 C 0.063 3.937 21 O -0.304 6.304 22 C 0.060 3.940 23 C -0.180 4.180 24 C -0.139 4.139 25 C -0.080 4.080 26 H 0.224 0.776 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.284 0.716 30 H 0.164 0.836 31 H 0.194 0.806 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 -6.705 -1.687 10.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.147 4.147 3 C 0.106 3.894 4 N -0.613 5.613 5 C -0.408 4.408 6 H 0.138 0.862 7 C -0.211 4.211 8 N -0.465 5.465 9 Si 0.815 3.185 10 H -0.187 1.187 11 H -0.198 1.198 12 H -0.191 1.191 13 S 2.623 3.377 14 O -0.993 6.993 15 O -1.001 7.001 16 C -0.763 4.763 17 C -0.028 4.028 18 N -0.183 5.183 19 C -0.062 4.062 20 C 0.015 3.985 21 O -0.217 6.217 22 C 0.005 3.995 23 C -0.237 4.237 24 C -0.196 4.196 25 C -0.108 4.108 26 H 0.241 0.759 27 H 0.135 0.865 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.182 0.818 31 H 0.211 0.789 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.047 -7.050 -0.743 9.996 hybrid contribution -0.363 0.435 -0.517 0.767 sum -7.410 -6.615 -1.260 10.012 Atomic orbital electron populations 1.24911 0.96084 1.05857 1.00415 1.23582 0.95002 0.96027 1.00057 1.18611 0.84385 1.01504 0.84855 1.55570 1.71217 1.17707 1.16845 1.20446 1.30834 0.81172 1.08369 0.86181 1.26376 0.95110 1.03243 0.96349 1.70265 1.22327 1.34609 1.19292 0.84963 0.79026 0.75660 0.78826 1.18733 1.19780 1.19142 1.12439 0.78494 0.74140 0.72656 1.93306 1.63111 1.79817 1.63109 1.93289 1.86401 1.52410 1.67974 1.33174 1.27296 1.05655 1.10217 1.22354 0.93966 0.96391 0.90088 1.67775 1.02569 1.14804 1.33122 1.22829 0.99314 0.91470 0.92597 1.20168 0.89762 0.92519 0.96089 1.86093 1.45419 1.53878 1.36302 1.22834 0.99791 0.95093 0.81817 1.22401 0.98761 0.98043 1.04541 1.21849 0.93464 1.02542 1.01730 1.21406 0.92751 0.96625 0.99998 0.75917 0.86480 0.89335 0.90569 0.81843 0.78901 0.91842 0.90240 0.88658 0.94124 0.91652 0.88303 0.90544 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.71 19.25 74.32 1.43 -8.28 16 2 C -0.14 -6.07 11.34 31.12 0.35 -5.72 16 3 C 0.23 9.94 5.44 84.57 0.46 10.40 16 4 N -0.79 -36.67 2.88 -352.51 -1.01 -37.68 16 5 C -0.26 -12.17 9.50 84.03 0.80 -11.37 16 6 H 0.12 5.65 7.19 -2.91 -0.02 5.63 16 7 C 0.00 0.05 4.99 84.86 0.42 0.47 16 8 N -0.83 -36.89 8.87 21.65 0.19 -36.70 16 9 Si 0.99 35.43 29.61 68.60 2.03 37.47 16 10 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 11 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 12 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 13 S 2.52 117.83 5.67 -56.49 -0.32 117.51 16 14 O -1.00 -50.97 16.07 -128.00 -2.06 -53.03 16 15 O -1.01 -48.75 15.93 -128.00 -2.04 -50.79 16 16 C -0.68 -29.52 5.99 22.35 0.13 -29.38 16 17 C 0.13 5.45 10.68 84.70 0.90 6.36 16 18 N -0.47 -18.29 10.36 -195.44 -2.02 -20.31 16 19 C 0.10 3.26 11.14 84.80 0.94 4.20 16 20 C 0.06 2.17 6.62 22.60 0.15 2.32 16 21 O -0.30 -8.86 9.81 -92.55 -0.91 -9.76 16 22 C 0.06 1.48 2.84 30.59 0.09 1.56 16 23 C -0.18 -4.05 9.20 71.98 0.66 -3.38 16 24 C -0.14 -2.38 9.56 71.98 0.69 -1.69 16 25 C -0.08 -3.13 7.84 22.56 0.18 -2.95 16 26 H 0.22 6.85 7.80 -4.41 -0.03 6.82 16 27 H 0.12 5.06 6.30 -2.39 -0.02 5.05 16 28 H 0.09 3.57 6.96 -2.38 -0.02 3.55 16 29 H 0.28 11.88 8.31 -92.71 -0.77 11.11 16 30 H 0.16 6.76 7.62 -2.91 -0.02 6.73 16 31 H 0.19 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.06 1.74 6.31 -2.38 -0.02 1.73 16 33 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.11 7.00 -2.39 -0.02 1.09 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.15 5.50 5.27 -2.91 -0.02 5.49 16 Total: -1.00 -60.02 346.47 2.15 -57.88 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 1.07 Total: 32.87 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 7.21 Total: -37.46 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -2.85 Total: -94.69 kcal Atomic # 8 Polarization: -108.57 SS G_CDS: -5.00 Total: -113.58 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.47 kcal Atomic # 16 Polarization: 117.83 SS G_CDS: -0.32 Total: 117.51 kcal Total: -60.02 2.15 -57.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329224627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.579 kcal (2) G-P(sol) polarization free energy of solvation -60.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds