Wall clock time and date at job start Tue Mar 31 2020 14:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00195 * 2 1 4 4 H 1.48499 * 109.47139 * 239.99355 * 3 2 1 5 5 H 1.48500 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47152 * 119.99923 * 3 2 1 7 7 C 1.37878 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00555 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.53936 * 60.09235 * 9 7 2 11 11 C 1.53120 * 109.50180 * 299.99415 * 9 7 2 12 12 C 1.53116 * 109.16264 * 182.40622 * 11 9 7 13 13 C 1.53039 * 109.27737 * 57.65756 * 12 11 9 14 14 N 1.46851 * 109.52066 * 300.81826 * 13 12 11 15 15 C 1.46904 * 110.99648 * 185.84094 * 14 13 12 16 16 C 1.50702 * 109.47145 * 75.77935 * 15 14 13 17 17 C 1.38236 * 120.00551 * 254.40750 * 16 15 14 18 18 C 1.38213 * 120.01354 * 180.02562 * 17 16 15 19 19 C 1.38268 * 120.02780 * 0.28124 * 18 17 16 20 20 N 1.48012 * 119.99541 * 179.72278 * 19 18 17 21 21 O 1.21801 * 120.00127 * 359.97438 * 20 19 18 22 22 O 1.21796 * 119.99983 * 179.97438 * 20 19 18 23 23 C 1.38204 * 120.00902 * 359.44240 * 19 18 17 24 24 C 1.38327 * 120.00554 * 74.43417 * 16 15 14 25 25 Cl 1.73595 * 120.01459 * 359.94990 * 24 16 15 26 26 C 1.46841 * 111.19577 * 61.74779 * 14 13 12 27 27 H 0.96999 * 120.00024 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.52616 * 62.50231 * 11 9 7 29 29 H 1.09000 * 109.57811 * 302.34351 * 11 9 7 30 30 H 1.08997 * 109.50314 * 297.71642 * 12 11 9 31 31 H 1.09002 * 109.50598 * 177.59878 * 12 11 9 32 32 H 1.09005 * 109.46080 * 180.80553 * 13 12 11 33 33 H 1.08993 * 109.46745 * 60.83937 * 13 12 11 34 34 H 1.09000 * 109.46815 * 315.77361 * 15 14 13 35 35 H 1.09002 * 109.46700 * 195.78222 * 15 14 13 36 36 H 1.07998 * 119.99168 * 0.04755 * 17 16 15 37 37 H 1.08001 * 119.99008 * 179.97438 * 18 17 16 38 38 H 1.07993 * 120.00422 * 180.29924 * 23 19 18 39 39 H 1.08999 * 109.46649 * 58.26752 * 26 14 13 40 40 H 1.08999 * 109.46427 * 178.24314 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6254 -2.5589 -0.8901 11 6 0.3699 -2.5807 1.2503 12 6 -0.3458 -3.9341 1.2732 13 6 0.6942 -5.0563 1.2419 14 7 1.5108 -4.9348 0.0274 15 6 2.4283 -6.0743 -0.1062 16 6 1.6604 -7.2861 -0.5675 17 6 1.3783 -8.3058 0.3223 18 6 0.6744 -9.4175 -0.1007 19 6 0.2571 -9.5132 -1.4154 20 7 -0.4913 -10.7069 -1.8692 21 8 -0.7390 -11.6050 -1.0846 22 8 -0.8594 -10.7911 -3.0271 23 6 0.5335 -8.4919 -2.3045 24 6 1.2381 -7.3786 -1.8815 25 17 1.5914 -6.0983 -2.9993 26 6 2.2446 -3.6630 0.0061 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3680 -1.7788 1.2288 29 1 0.9899 -2.4815 2.1413 30 1 -0.9964 -4.0165 0.4025 31 1 -0.9416 -4.0154 2.1823 32 1 0.1874 -6.0214 1.2436 33 1 1.3357 -4.9817 2.1199 34 1 2.8914 -6.2829 0.8583 35 1 3.2015 -5.8345 -0.8361 36 1 1.7076 -8.2334 1.3483 37 1 0.4546 -10.2141 0.5947 38 1 0.2033 -8.5645 -3.3301 39 1 2.8789 -3.5948 0.8900 40 1 2.8639 -3.6160 -0.8896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397633503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:48 Heat of formation + Delta-G solvation = 11.602440 kcal Electronic energy + Delta-G solvation = -24962.757668 eV Core-core repulsion = 21192.190602 eV Total energy + Delta-G solvation = -3770.567066 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.38684 -40.10682 -38.17274 -36.78961 -36.63705 -34.43887 -32.68781 -31.55960 -31.18219 -29.94578 -27.75798 -25.11538 -24.94689 -23.55202 -22.55041 -21.79466 -21.08822 -19.65806 -18.90851 -18.71230 -17.73714 -16.60318 -16.27404 -16.08111 -15.53794 -15.29387 -14.65862 -14.44451 -14.21919 -13.84699 -13.61135 -13.24257 -12.74078 -12.43328 -12.27117 -12.08319 -11.91110 -11.88499 -11.76304 -11.49804 -11.42918 -11.33755 -10.99362 -10.97037 -10.79247 -10.74196 -10.24221 -9.92804 -9.78166 -9.56924 -9.33936 -9.11733 -8.80260 -8.37339 -7.91129 -6.03493 -4.10241 -0.44342 0.49957 1.06365 1.08707 1.91518 2.83531 3.27431 3.32971 3.34700 4.00453 4.14099 4.24182 4.30714 4.40360 4.57560 4.64065 5.05361 5.12230 5.25772 5.26660 5.37034 5.47166 5.56125 5.62779 5.77939 5.82286 5.92471 6.11477 6.16917 6.25348 6.37633 6.58097 6.63529 6.83279 7.10181 7.25842 7.42578 7.45334 7.58903 7.69651 7.99931 8.09792 8.39663 8.93440 9.54472 11.02330 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.002997 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.541980 B = 9339.460829 C = 9715.703597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.058 3.942 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.527 5.527 15 C 0.078 3.922 16 C -0.005 4.005 17 C -0.104 4.104 18 C -0.053 4.053 19 C -0.042 4.042 20 N 0.032 4.968 21 O -0.161 6.161 22 O -0.159 6.159 23 C -0.052 4.052 24 C -0.018 4.018 25 Cl -0.016 7.016 26 C 0.071 3.929 27 H 0.261 0.739 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.027 0.973 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.022 0.978 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -17.186 0.077 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.039 3.961 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.251 5.251 15 C -0.050 4.050 16 C -0.007 4.007 17 C -0.124 4.124 18 C -0.073 4.073 19 C -0.125 4.125 20 N 0.551 4.449 21 O -0.376 6.376 22 O -0.375 6.375 23 C -0.071 4.071 24 C -0.046 4.046 25 Cl 0.014 6.986 26 C -0.056 4.056 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.040 0.960 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.945 -16.343 -0.207 16.608 hybrid contribution 0.763 0.674 0.509 1.138 sum 3.708 -15.669 0.302 16.105 Atomic orbital electron populations 1.69870 1.05842 1.26524 1.50331 1.24920 0.94820 0.98947 0.95043 0.86694 0.79632 0.83307 0.78554 1.20300 1.21296 1.20381 1.21080 0.92758 0.90624 1.51146 0.92901 1.18643 0.92510 0.90078 0.94891 0.94672 1.21667 1.00102 0.94660 0.98490 1.21664 0.97092 0.96387 1.00295 1.22109 0.95756 0.98867 0.89932 1.61997 1.23249 1.01432 1.38406 1.21202 0.94122 0.88780 1.00902 1.20390 0.93437 0.95684 0.91191 1.21117 0.98630 0.91979 1.00657 1.21072 0.94120 0.98999 0.93059 1.20874 1.06381 0.89110 0.96153 1.43529 0.98957 1.01781 1.00598 1.94535 1.59782 1.31858 1.51446 1.94554 1.54728 1.85459 1.02786 1.20847 0.94999 0.90138 1.01151 1.20559 1.00644 0.91211 0.92194 1.98453 1.92848 1.47714 1.59624 1.22359 0.96506 0.87745 0.98955 0.92939 0.89030 0.95121 0.92101 0.93458 0.92694 0.95491 0.93065 0.88780 0.82911 0.82575 0.82138 0.96013 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 11.35 55.43 0.63 -23.95 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.53 8.56 -34.44 -0.29 -13.82 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.06 1.35 2.27 -91.69 -0.21 1.14 16 10 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.47 5.02 -26.61 -0.13 -2.61 16 12 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 13 C 0.06 0.94 5.29 -3.83 -0.02 0.92 16 14 N -0.53 -8.27 4.44 -236.11 -1.05 -9.32 16 15 C 0.08 0.94 4.47 -4.97 -0.02 0.91 16 16 C -0.01 -0.06 4.81 -104.59 -0.50 -0.56 16 17 C -0.10 -0.90 9.14 -39.59 -0.36 -1.26 16 18 C -0.05 -0.48 9.55 -39.58 -0.38 -0.86 16 19 C -0.04 -0.46 6.85 -79.95 -0.55 -1.01 16 20 N 0.03 0.40 4.45 33.96 0.15 0.56 16 21 O -0.16 -2.08 18.45 -29.46 -0.54 -2.63 16 22 O -0.16 -2.15 18.45 -29.46 -0.54 -2.69 16 23 C -0.05 -0.56 9.34 -39.54 -0.37 -0.93 16 24 C -0.02 -0.20 6.31 -39.50 -0.25 -0.45 16 25 Cl -0.02 -0.20 27.54 -51.86 -1.43 -1.63 16 26 C 0.07 1.34 4.65 -3.83 -0.02 1.32 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.09 2.33 6.15 -51.93 -0.32 2.01 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.74 7.07 -51.93 -0.37 0.37 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.54 7.80 -51.93 -0.41 0.13 16 35 H 0.09 1.12 7.26 -51.93 -0.38 0.74 16 36 H 0.15 0.95 8.00 -52.49 -0.42 0.53 16 37 H 0.16 1.11 7.61 -52.49 -0.40 0.71 16 38 H 0.16 1.60 7.61 -52.49 -0.40 1.20 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -27.93 347.53 -11.11 -39.04 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.18 Total: -2.40 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.36 Total: -17.85 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: -0.27 Total: -32.71 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -1.09 Total: -5.32 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.43 Total: -1.63 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.93 -11.11 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397633503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.640 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds