Wall clock time and date at job start Tue Mar 31 2020 14:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00195 * 2 1 4 4 H 1.48499 * 109.47139 * 239.99355 * 3 2 1 5 5 H 1.48500 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47152 * 119.99923 * 3 2 1 7 7 C 1.37878 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00555 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.53936 * 60.09235 * 9 7 2 11 11 C 1.53120 * 109.50180 * 299.99415 * 9 7 2 12 12 C 1.53116 * 109.16264 * 182.40622 * 11 9 7 13 13 C 1.53039 * 109.27737 * 57.65756 * 12 11 9 14 14 N 1.46851 * 109.52066 * 300.81826 * 13 12 11 15 15 C 1.46904 * 110.99648 * 185.84094 * 14 13 12 16 16 C 1.50702 * 109.47145 * 75.77935 * 15 14 13 17 17 C 1.38236 * 120.00551 * 254.40750 * 16 15 14 18 18 C 1.38213 * 120.01354 * 180.02562 * 17 16 15 19 19 C 1.38268 * 120.02780 * 0.28124 * 18 17 16 20 20 N 1.48012 * 119.99541 * 179.72278 * 19 18 17 21 21 O 1.21801 * 120.00127 * 359.97438 * 20 19 18 22 22 O 1.21796 * 119.99983 * 179.97438 * 20 19 18 23 23 C 1.38204 * 120.00902 * 359.44240 * 19 18 17 24 24 C 1.38327 * 120.00554 * 74.43417 * 16 15 14 25 25 Cl 1.73595 * 120.01459 * 359.94990 * 24 16 15 26 26 C 1.46841 * 111.19577 * 61.74779 * 14 13 12 27 27 H 0.96999 * 120.00024 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.52616 * 62.50231 * 11 9 7 29 29 H 1.09000 * 109.57811 * 302.34351 * 11 9 7 30 30 H 1.08997 * 109.50314 * 297.71642 * 12 11 9 31 31 H 1.09002 * 109.50598 * 177.59878 * 12 11 9 32 32 H 1.09005 * 109.46080 * 180.80553 * 13 12 11 33 33 H 1.08993 * 109.46745 * 60.83937 * 13 12 11 34 34 H 1.09000 * 109.46815 * 315.77361 * 15 14 13 35 35 H 1.09002 * 109.46700 * 195.78222 * 15 14 13 36 36 H 1.07998 * 119.99168 * 0.04755 * 17 16 15 37 37 H 1.08001 * 119.99008 * 179.97438 * 18 17 16 38 38 H 1.07993 * 120.00422 * 180.29924 * 23 19 18 39 39 H 1.08999 * 109.46649 * 58.26752 * 26 14 13 40 40 H 1.08999 * 109.46427 * 178.24314 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6254 -2.5589 -0.8901 11 6 0.3699 -2.5807 1.2503 12 6 -0.3458 -3.9341 1.2732 13 6 0.6942 -5.0563 1.2419 14 7 1.5108 -4.9348 0.0274 15 6 2.4283 -6.0743 -0.1062 16 6 1.6604 -7.2861 -0.5675 17 6 1.3783 -8.3058 0.3223 18 6 0.6744 -9.4175 -0.1007 19 6 0.2571 -9.5132 -1.4154 20 7 -0.4913 -10.7069 -1.8692 21 8 -0.7390 -11.6050 -1.0846 22 8 -0.8594 -10.7911 -3.0271 23 6 0.5335 -8.4919 -2.3045 24 6 1.2381 -7.3786 -1.8815 25 17 1.5914 -6.0983 -2.9993 26 6 2.2446 -3.6630 0.0061 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3680 -1.7788 1.2288 29 1 0.9899 -2.4815 2.1413 30 1 -0.9964 -4.0165 0.4025 31 1 -0.9416 -4.0154 2.1823 32 1 0.1874 -6.0214 1.2436 33 1 1.3357 -4.9817 2.1199 34 1 2.8914 -6.2829 0.8583 35 1 3.2015 -5.8345 -0.8361 36 1 1.7076 -8.2334 1.3483 37 1 0.4546 -10.2141 0.5947 38 1 0.2033 -8.5645 -3.3301 39 1 2.8789 -3.5948 0.8900 40 1 2.8639 -3.6160 -0.8896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397633503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:48 Heat of formation + Delta-G solvation = -2.021638 kcal Electronic energy + Delta-G solvation = -24963.348452 eV Core-core repulsion = 21192.190602 eV Total energy + Delta-G solvation = -3771.157850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.32037 -40.99720 -39.50552 -37.74975 -37.56347 -35.90673 -34.20473 -32.58161 -32.20844 -31.61706 -28.80523 -26.90465 -26.08808 -24.35104 -23.78936 -23.22016 -22.27563 -20.53798 -20.33512 -19.82014 -18.67446 -18.44133 -17.15717 -17.12916 -16.63169 -16.39552 -16.34710 -15.56209 -15.13854 -15.01195 -14.79844 -14.71044 -14.32395 -13.97161 -13.43039 -13.22853 -13.06508 -12.83935 -12.82492 -12.77939 -12.66197 -12.54908 -12.45961 -12.37311 -12.34202 -11.92500 -11.83138 -11.67883 -11.36758 -10.90693 -10.67096 -10.52512 -10.36049 -10.13044 -9.14260 -8.06883 -6.20617 -1.35133 -0.26547 0.15772 0.20471 1.03233 1.41877 1.42473 1.49810 2.03138 2.43220 3.07711 3.20649 3.31623 3.38933 3.48953 3.69204 3.85503 4.18874 4.19011 4.32772 4.34158 4.44120 4.53366 4.63179 4.64544 4.68378 4.77855 4.92566 4.97740 5.00745 5.02818 5.12140 5.20982 5.30087 5.41716 5.54934 5.65218 5.97025 6.14202 6.23338 6.30680 6.42477 6.46728 6.93398 7.47501 8.97109 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.002997 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.541980 B = 9339.460829 C = 9715.703597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.055 3.945 10 H -0.007 1.007 11 C -0.104 4.104 12 C -0.111 4.111 13 C 0.067 3.933 14 N -0.538 5.538 15 C 0.080 3.920 16 C -0.010 4.010 17 C -0.087 4.087 18 C -0.041 4.041 19 C -0.050 4.050 20 N 0.032 4.968 21 O -0.154 6.154 22 O -0.193 6.193 23 C -0.056 4.056 24 C -0.027 4.027 25 Cl -0.038 7.038 26 C 0.088 3.912 27 H 0.259 0.741 28 H 0.052 0.948 29 H 0.026 0.974 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.191 0.809 37 H 0.182 0.818 38 H 0.160 0.840 39 H 0.024 0.976 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -18.912 2.093 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.011 0.989 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.061 4.061 14 N -0.263 5.263 15 C -0.047 4.047 16 C -0.012 4.012 17 C -0.106 4.106 18 C -0.060 4.060 19 C -0.134 4.134 20 N 0.549 4.451 21 O -0.374 6.374 22 O -0.402 6.402 23 C -0.076 4.076 24 C -0.055 4.055 25 Cl -0.008 7.008 26 C -0.039 4.039 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.208 0.792 37 H 0.199 0.801 38 H 0.178 0.822 39 H 0.042 0.958 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.157 -18.079 1.749 18.633 hybrid contribution 0.378 1.161 -0.074 1.224 sum 4.535 -16.918 1.675 17.595 Atomic orbital electron populations 1.70030 1.07162 1.26970 1.51335 1.25683 0.95568 1.02204 0.94980 0.85747 0.78446 0.79459 0.78798 1.19821 1.21312 1.19541 1.21522 0.93042 0.92202 1.50523 0.92877 1.18544 0.92958 0.91274 0.93560 0.98863 1.21455 0.99097 0.96138 0.97535 1.21564 0.97657 0.95158 1.00489 1.22075 0.95119 0.98729 0.90135 1.61811 1.24108 1.01266 1.39086 1.21222 0.93563 0.87538 1.02419 1.20394 0.93680 0.96024 0.91068 1.21465 0.97020 0.90443 1.01684 1.21426 0.92704 0.99592 0.92239 1.21026 1.06846 0.88377 0.97141 1.43772 0.98816 1.02166 1.00382 1.94508 1.59364 1.32291 1.51194 1.94563 1.56220 1.86076 1.03360 1.20833 0.95109 0.90191 1.01448 1.20614 1.01593 0.90881 0.92444 1.98448 1.93070 1.48699 1.60607 1.21934 0.95114 0.88025 0.98831 0.93231 0.92909 0.95555 0.93887 0.91448 0.89654 0.94151 0.90181 0.89006 0.79225 0.80053 0.82227 0.95766 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.48 11.35 21.45 0.24 -52.24 16 2 C 0.01 0.78 5.30 84.66 0.45 1.23 16 3 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.53 -28.49 8.56 25.60 0.22 -28.27 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 9 C 0.06 2.66 2.27 -11.48 -0.03 2.63 16 10 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 11 C -0.10 -4.70 5.02 30.67 0.15 -4.54 16 12 C -0.11 -3.89 6.09 30.65 0.19 -3.70 16 13 C 0.07 1.82 5.29 86.33 0.46 2.28 16 14 N -0.54 -15.79 4.44 -900.90 -4.00 -19.79 16 15 C 0.08 1.65 4.47 85.56 0.38 2.03 16 16 C -0.01 -0.18 4.81 -19.84 -0.10 -0.27 16 17 C -0.09 -1.06 9.14 22.26 0.20 -0.85 16 18 C -0.04 -0.55 9.55 22.27 0.21 -0.34 16 19 C -0.05 -0.99 6.85 36.38 0.25 -0.74 16 20 N 0.03 0.78 4.45 -46.47 -0.21 0.57 16 21 O -0.15 -3.67 18.45 18.88 0.35 -3.32 16 22 O -0.19 -5.21 18.45 18.89 0.35 -4.86 16 23 C -0.06 -1.15 9.34 22.29 0.21 -0.95 16 24 C -0.03 -0.58 6.31 22.32 0.14 -0.44 16 25 Cl -0.04 -0.96 27.54 -2.72 -0.07 -1.04 16 26 C 0.09 3.28 4.65 86.33 0.40 3.68 16 27 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.05 2.78 6.15 -2.39 -0.01 2.77 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 1.86 7.07 -2.38 -0.02 1.84 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.26 7.80 -2.39 -0.02 1.24 16 35 H 0.09 1.97 7.26 -2.39 -0.02 1.96 16 36 H 0.19 0.98 8.00 -2.91 -0.02 0.96 16 37 H 0.18 1.61 7.61 -2.91 -0.02 1.59 16 38 H 0.16 3.22 7.61 -2.91 -0.02 3.19 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 2.15 7.93 -2.39 -0.02 2.14 16 Total: -1.00 -63.31 347.53 2.89 -60.43 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.06 Total: 3.61 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.14 Total: -28.26 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -3.96 Total: -71.46 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.70 Total: -8.18 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.04 kcal Total: -63.31 2.89 -60.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397633503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.405 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds