Wall clock time and date at job start Tue Mar 31 2020 13:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46659 * 2 1 4 4 C 1.35638 * 116.99408 * 179.97438 * 3 2 1 5 5 C 1.38637 * 120.15219 * 0.02562 * 4 3 2 6 6 C 1.38206 * 120.08185 * 179.97438 * 5 4 3 7 7 Cl 1.73599 * 119.81709 * 179.97438 * 6 5 4 8 8 C 1.38727 * 120.36979 * 0.02562 * 6 5 4 9 9 C 1.37698 * 120.29657 * 359.67139 * 8 6 5 10 10 C 1.39812 * 119.91154 * 0.60769 * 9 8 6 11 11 C 1.47336 * 120.17935 * 179.69284 * 10 9 8 12 12 O 1.21525 * 119.99637 * 185.88825 * 11 10 9 13 13 O 1.34755 * 120.00612 * 5.61400 * 11 10 9 14 14 C 1.45196 * 117.00592 * 176.31170 * 13 11 10 15 15 C 1.52998 * 109.47485 * 184.70748 * 14 13 11 16 16 C 1.50696 * 115.55215 * 306.66918 * 15 14 13 17 17 H 1.07997 * 120.00384 * 144.80784 * 16 15 14 18 18 C 1.37883 * 119.99825 * 324.80284 * 16 15 14 19 19 N 1.31509 * 119.99805 * 350.84214 * 18 16 15 20 20 Si 1.86797 * 119.99790 * 170.84276 * 18 16 15 21 21 H 1.48495 * 109.47243 * 60.00193 * 20 18 16 22 22 H 1.48501 * 109.46729 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47111 * 299.99859 * 20 18 16 24 24 C 1.53005 * 117.49924 * 160.99067 * 15 14 13 25 25 C 1.53001 * 117.49511 * 92.33386 * 15 14 13 26 26 H 1.08995 * 109.47339 * 60.00451 * 1 2 3 27 27 H 1.09006 * 109.46622 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47079 * 299.99975 * 1 2 3 29 29 H 1.08994 * 109.47359 * 239.99709 * 2 1 3 30 30 H 1.09005 * 109.47330 * 119.99334 * 2 1 3 31 31 H 1.07999 * 119.96061 * 359.95283 * 5 4 3 32 32 H 1.08003 * 119.84869 * 179.97438 * 8 6 5 33 33 H 1.07994 * 120.04366 * 180.32363 * 9 8 6 34 34 H 1.09000 * 109.47543 * 304.71710 * 14 13 11 35 35 H 1.09005 * 109.46959 * 64.71084 * 14 13 11 36 36 H 0.97002 * 119.99763 * 185.02811 * 19 18 16 37 37 H 1.09000 * 117.49477 * 0.02562 * 24 15 14 38 38 H 1.08998 * 117.49802 * 145.02512 * 24 15 14 39 39 H 1.08996 * 117.50079 * 214.98380 * 25 15 14 40 40 H 1.09007 * 117.49859 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3509 1.5251 0.0005 5 6 4.1983 0.4278 0.0005 6 6 5.5683 0.6106 0.0005 7 17 6.6230 -0.7683 0.0012 8 6 6.1052 1.8897 0.0011 9 6 5.2779 2.9904 -0.0052 10 6 3.8902 2.8196 0.0007 11 6 2.9995 3.9932 0.0009 12 8 1.7987 3.8445 0.1140 13 8 3.5167 5.2318 -0.1187 14 6 2.5756 6.3349 -0.1937 15 6 3.3365 7.6385 -0.4434 16 6 4.4533 7.9348 0.5240 17 1 5.3500 8.4280 0.1790 18 6 4.3303 7.5763 1.8497 19 7 3.1770 7.1424 2.3092 20 14 5.8017 7.7069 2.9930 21 1 6.2652 9.1167 3.0442 22 1 5.4108 7.2640 4.3554 23 1 6.8991 6.8430 2.4881 24 6 2.5425 8.8262 -0.9910 25 6 3.5250 8.0792 -1.8964 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 3.7875 -0.5710 0.0009 32 1 7.1770 2.0228 0.0015 33 1 5.7003 3.9843 -0.0100 34 1 1.8756 6.1605 -1.0108 35 1 2.0268 6.4087 0.7452 36 1 3.0699 6.9596 3.2558 37 1 1.4779 8.6789 -1.1730 38 1 2.8281 9.8219 -0.6518 39 1 4.4566 8.5837 -2.1525 40 1 3.1073 7.4401 -2.6744 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779213607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:13 Heat of formation + Delta-G solvation = -77.383978 kcal Electronic energy + Delta-G solvation = -25215.345503 eV Core-core repulsion = 21408.626945 eV Total energy + Delta-G solvation = -3806.718558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54576 -39.00121 -37.82137 -36.71643 -36.38412 -34.88196 -32.14803 -32.06004 -31.21595 -29.74882 -26.62581 -25.37514 -24.30018 -23.55238 -21.86048 -21.24283 -20.39554 -19.15381 -18.44368 -17.09344 -16.71518 -16.29213 -16.16767 -15.35684 -15.33571 -15.22966 -14.57042 -14.39163 -13.81856 -13.72091 -13.64375 -13.03996 -12.80550 -12.75995 -12.54933 -12.08541 -12.00901 -11.78624 -11.51180 -11.37557 -11.27614 -11.15444 -10.94970 -10.82968 -10.74232 -10.49890 -10.32506 -9.86057 -9.44389 -9.37091 -9.06308 -9.03731 -8.75376 -8.36258 -8.11876 -6.02038 -4.08188 0.64999 1.23196 1.83778 2.94965 3.03357 3.28867 3.35349 3.36909 3.50280 3.85600 4.37080 4.59213 4.74695 4.77146 4.87513 4.94822 4.99463 5.07212 5.21137 5.35385 5.49053 5.53587 5.66123 5.68543 5.90262 5.99367 6.02643 6.11176 6.17463 6.24099 6.49361 6.50704 6.65489 6.66415 6.83369 6.99600 7.24459 7.27038 7.44872 7.59201 7.91435 8.35171 8.70817 8.88328 9.52194 10.98720 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.004204 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.018852 B = 6658.882402 C = 7915.045000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.274 6.274 4 C 0.199 3.801 5 C -0.222 4.222 6 C 0.030 3.970 7 Cl -0.067 7.067 8 C -0.165 4.165 9 C -0.007 4.007 10 C -0.143 4.143 11 C 0.498 3.502 12 O -0.503 6.503 13 O -0.321 6.321 14 C 0.119 3.881 15 C 0.049 3.951 16 C -0.484 4.484 17 H 0.062 0.938 18 C 0.076 3.924 19 N -0.882 5.882 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.194 4.194 25 C -0.210 4.210 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.025 0.975 35 H 0.114 0.886 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -16.118 -4.515 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.185 6.185 4 C 0.150 3.850 5 C -0.242 4.242 6 C 0.004 3.996 7 Cl -0.038 7.038 8 C -0.183 4.183 9 C -0.026 4.026 10 C -0.145 4.145 11 C 0.341 3.659 12 O -0.393 6.393 13 O -0.235 6.235 14 C 0.046 3.954 15 C 0.049 3.951 16 C -0.521 4.521 17 H 0.080 0.920 18 C -0.127 4.127 19 N -0.518 5.518 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.232 4.232 25 C -0.247 4.247 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.044 0.956 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.988 -16.225 -4.300 16.814 hybrid contribution 0.784 -0.249 0.634 1.039 sum 1.772 -16.473 -3.665 16.969 Atomic orbital electron populations 1.21740 0.92326 1.02462 1.04197 1.22934 0.96618 0.82071 1.01285 1.86430 1.17127 1.28580 1.86337 1.18784 0.83228 0.91817 0.91141 1.20930 0.91957 0.98892 1.12373 1.20858 0.90392 0.88556 0.99842 1.98374 1.65967 1.42870 1.96585 1.20958 1.01222 0.89840 1.06327 1.21515 0.90754 1.00309 0.89992 1.18872 0.93554 0.89539 1.12571 1.20568 0.86663 0.84154 0.74473 1.90809 1.15984 1.87046 1.45468 1.86516 1.41488 1.13982 1.81555 1.22803 0.88947 0.81558 1.02067 1.18884 0.96702 0.89197 0.90353 1.20377 1.00774 1.38589 0.92369 0.92028 1.24924 0.95752 0.93932 0.98096 1.69772 1.23111 1.44735 1.14232 0.86622 0.83039 0.78509 0.79667 1.20274 1.21261 1.19892 1.22968 0.95101 0.98645 1.06440 1.22966 1.00484 1.05668 0.95591 0.91282 0.90528 0.91144 0.91923 0.91865 0.83892 0.84016 0.82073 0.95644 0.86876 0.92628 0.91492 0.89808 0.90332 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.27 -4.40 8.23 -40.42 -0.33 -4.73 16 4 C 0.20 3.14 6.70 -38.68 -0.26 2.88 16 5 C -0.22 -2.80 8.80 -39.45 -0.35 -3.15 16 6 C 0.03 0.37 6.32 -39.41 -0.25 0.13 16 7 Cl -0.07 -0.70 28.94 -51.86 -1.50 -2.20 16 8 C -0.16 -2.11 9.80 -39.60 -0.39 -2.50 16 9 C -0.01 -0.11 9.61 -39.19 -0.38 -0.49 16 10 C -0.14 -2.58 5.89 -104.86 -0.62 -3.20 16 11 C 0.50 11.03 7.87 34.43 0.27 11.30 16 12 O -0.50 -12.13 14.95 -26.59 -0.40 -12.52 16 13 O -0.32 -7.66 9.11 -40.64 -0.37 -8.03 16 14 C 0.12 2.96 4.53 37.16 0.17 3.13 16 15 C 0.05 1.22 2.14 -155.66 -0.33 0.88 16 16 C -0.48 -12.91 8.77 -34.44 -0.30 -13.21 16 17 H 0.06 1.63 7.83 -52.49 -0.41 1.21 16 18 C 0.08 2.03 5.19 -17.82 -0.09 1.94 16 19 N -0.88 -24.43 10.71 55.43 0.59 -23.84 16 20 Si 0.89 20.70 29.55 -169.99 -5.02 15.68 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.19 -4.31 9.96 -26.69 -0.27 -4.58 16 25 C -0.21 -4.52 9.92 -26.69 -0.26 -4.79 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 30 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 31 H 0.14 1.43 6.30 -52.49 -0.33 1.10 16 32 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.16 2.55 7.62 -52.49 -0.40 2.15 16 34 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 35 H 0.11 3.12 6.04 -51.93 -0.31 2.80 16 36 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -30.12 358.54 -9.28 -39.40 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.18 Total: 2.85 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.47 Total: -12.01 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.59 Total: -23.84 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.10 Total: -25.29 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.12 -9.28 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779213607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.981 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds