Wall clock time and date at job start Tue Mar 31 2020 13:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47395 * 2 1 4 4 C 1.46501 * 119.99924 * 275.00425 * 3 2 1 5 5 C 1.50697 * 109.46644 * 274.99499 * 4 3 2 6 6 H 1.07994 * 120.00702 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99446 * 180.02562 * 5 4 3 8 8 N 1.31503 * 120.00342 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99575 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46843 * 90.00038 * 9 7 5 11 11 H 1.48495 * 109.46935 * 209.99925 * 9 7 5 12 12 H 1.48494 * 109.47196 * 329.99943 * 9 7 5 13 13 S 1.65602 * 120.00060 * 94.99804 * 3 2 1 14 14 O 1.42089 * 106.40516 * 156.46370 * 13 3 2 15 15 O 1.42101 * 106.40038 * 23.54282 * 13 3 2 16 16 C 1.76207 * 107.21788 * 270.00561 * 13 3 2 17 17 C 1.38295 * 120.08311 * 270.01996 * 16 13 3 18 18 C 1.38688 * 120.46081 * 180.09063 * 17 16 13 19 19 C 1.39367 * 119.92032 * 359.82628 * 18 17 16 20 20 C 1.39207 * 118.90893 * 0.12415 * 19 18 17 21 21 C 1.37676 * 120.96452 * 359.97438 * 20 19 18 22 22 C 1.51138 * 106.18064 * 179.97438 * 20 19 18 23 23 C 1.51392 * 104.19000 * 0.11132 * 22 20 19 24 24 O 1.21286 * 126.44458 * 179.97438 * 23 22 20 25 25 N 1.34377 * 107.11317 * 359.93165 * 23 22 20 26 26 H 1.08995 * 109.47426 * 60.00116 * 1 2 3 27 27 H 1.09003 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47221 * 299.99855 * 1 2 3 29 29 H 1.09007 * 109.47221 * 240.00145 * 2 1 3 30 30 H 1.08998 * 109.47176 * 120.00355 * 2 1 3 31 31 H 1.08998 * 109.47474 * 34.99611 * 4 3 2 32 32 H 1.09001 * 109.47073 * 154.99770 * 4 3 2 33 33 H 0.97004 * 120.00680 * 180.02562 * 8 7 5 34 34 H 1.08000 * 119.81960 * 0.02562 * 17 16 13 35 35 H 1.08002 * 120.14045 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.04155 * 179.97438 * 21 20 19 37 37 H 1.09002 * 110.51071 * 241.39584 * 22 20 19 38 38 H 1.09004 * 110.51137 * 118.82658 * 22 20 19 39 39 H 0.96996 * 123.87332 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8528 2.3614 -3.0843 8 7 3.0284 3.1870 -3.6909 9 14 5.5099 1.9654 -3.8506 10 1 5.3748 0.7825 -4.7381 11 1 5.9787 3.1292 -4.6448 12 1 6.4933 1.6697 -2.7779 13 16 2.4122 2.1202 1.4287 14 8 3.3283 3.1570 1.1050 15 8 2.7095 1.0799 2.3499 16 6 0.9554 2.9118 2.0254 17 6 0.6783 4.2175 1.6637 18 6 -0.4650 4.8488 2.1303 19 6 -1.3449 4.1642 2.9667 20 6 -1.0520 2.8501 3.3206 21 6 0.0853 2.2283 2.8566 22 6 -2.1785 2.3950 4.2195 23 6 -3.0955 3.5967 4.3028 24 8 -4.1328 3.6696 4.9271 25 7 -2.5436 4.5678 3.5558 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.3617 1.8098 -1.9453 32 1 2.0921 3.1802 -1.0756 33 1 3.2801 3.5896 -4.5368 34 1 1.3570 4.7505 1.0143 35 1 -0.6766 5.8685 1.8443 36 1 0.2981 1.2083 3.1409 37 1 -1.7978 2.1358 5.2075 38 1 -2.7005 1.5461 3.7778 39 1 -2.9336 5.4483 3.4397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186912945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:47 Heat of formation + Delta-G solvation = -72.157709 kcal Electronic energy + Delta-G solvation = -25530.314070 eV Core-core repulsion = 21758.158598 eV Total energy + Delta-G solvation = -3772.155472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71432 -38.68292 -36.72166 -36.13751 -35.96051 -35.22005 -32.70276 -32.59535 -30.15961 -29.95704 -28.30093 -26.64284 -23.36292 -23.11725 -22.33124 -21.66479 -21.48415 -18.49215 -18.26986 -17.47224 -16.90359 -16.68180 -16.36728 -16.25644 -15.67056 -15.02233 -14.57914 -14.41923 -14.23907 -13.83147 -13.57252 -13.50298 -13.30727 -13.27503 -12.90440 -12.86674 -12.13166 -12.03501 -11.71942 -11.50539 -11.44253 -11.36371 -11.29302 -11.02604 -10.91067 -10.83761 -10.53805 -10.45531 -10.38926 -10.00042 -9.77262 -9.12125 -8.59548 -8.46368 -8.10662 -6.08814 -4.12608 0.51998 1.00378 1.06711 2.02337 2.57637 3.23717 3.30649 3.37421 3.43131 3.68449 3.77877 4.02744 4.31897 4.43831 4.49483 4.76859 4.86004 5.02040 5.08601 5.22179 5.27033 5.37775 5.39613 5.61985 5.67661 5.69805 5.74532 5.82626 5.95332 6.02905 6.23267 6.25190 6.36136 6.55591 6.60119 6.64483 7.19398 7.35423 7.53463 7.56216 7.88798 8.17316 8.89968 9.52812 10.99695 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.003605 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.687874 B = 7765.797290 C = 8015.817289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.980 5.980 4 C 0.256 3.744 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.687 3.313 14 O -0.941 6.941 15 O -0.975 6.975 16 C -0.691 4.691 17 C 0.022 3.978 18 C -0.158 4.158 19 C 0.184 3.816 20 C -0.169 4.169 21 C 0.031 3.969 22 C -0.113 4.113 23 C 0.531 3.469 24 O -0.503 6.503 25 N -0.660 5.660 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 -0.453 11.814 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.010 4.010 3 N -0.819 5.819 4 C 0.134 3.866 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.774 3.226 14 O -0.931 6.931 15 O -0.966 6.966 16 C -0.775 4.775 17 C 0.002 3.998 18 C -0.179 4.179 19 C 0.085 3.915 20 C -0.173 4.173 21 C 0.012 3.988 22 C -0.152 4.152 23 C 0.319 3.681 24 O -0.377 6.377 25 N -0.302 5.302 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.170 0.830 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.094 -0.384 12.474 16.051 hybrid contribution -0.158 0.714 -0.729 1.032 sum -10.252 0.330 11.745 15.594 Atomic orbital electron populations 1.22286 0.97300 1.01560 1.02132 1.21205 0.93034 0.82944 1.03862 1.57438 1.81122 1.21186 1.22193 1.19096 0.97546 0.91215 0.78700 1.21489 1.02024 1.27735 1.05539 0.92011 1.24914 0.97343 0.94786 0.96877 1.69907 1.36175 1.30203 1.17211 0.86526 0.84056 0.77832 0.79239 1.20652 1.21105 1.19633 1.02211 0.73962 0.73603 0.72810 1.93606 1.58302 1.57828 1.83339 1.93495 1.83156 1.56560 1.63358 1.31554 1.24926 1.06988 1.14041 1.20975 0.94029 0.91994 0.92814 1.20681 0.95144 1.00991 1.01111 1.18444 0.85918 0.93926 0.93188 1.19854 0.98385 0.94658 1.04358 1.19950 0.89319 0.99096 0.90456 1.21056 0.93978 0.98132 1.02067 1.20685 0.85014 0.85275 0.77102 1.90827 1.22726 1.82175 1.42005 1.43862 1.21805 1.17304 1.47256 0.91872 0.92073 0.93414 0.89368 0.90287 0.94455 0.94355 0.92690 0.82953 0.84583 0.83733 0.85617 0.85574 0.74651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.12 1.84 6.40 -4.04 -0.03 1.81 16 3 N -0.98 -18.76 2.77 -115.67 -0.32 -19.08 16 4 C 0.26 5.98 5.10 -5.19 -0.03 5.95 16 5 C -0.53 -14.11 9.38 -34.44 -0.32 -14.43 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -25.13 13.28 55.43 0.74 -24.39 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 S 2.69 49.56 5.65 -107.50 -0.61 48.96 16 14 O -0.94 -20.78 16.26 -57.18 -0.93 -21.71 16 15 O -0.98 -18.48 15.85 -57.18 -0.91 -19.39 16 16 C -0.69 -10.12 5.98 -39.50 -0.24 -10.36 16 17 C 0.02 0.29 9.53 -39.39 -0.38 -0.08 16 18 C -0.16 -1.73 10.12 -39.00 -0.39 -2.13 16 19 C 0.18 1.95 7.12 -83.58 -0.59 1.36 16 20 C -0.17 -1.82 6.36 -104.25 -0.66 -2.49 16 21 C 0.03 0.39 8.42 -39.73 -0.33 0.05 16 22 C -0.11 -0.96 6.87 -28.48 -0.20 -1.16 16 23 C 0.53 5.55 8.71 -10.82 -0.09 5.46 16 24 O -0.50 -6.80 18.03 5.55 0.10 -6.70 16 25 N -0.66 -6.04 5.88 -9.63 -0.06 -6.10 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.56 7.01 -51.93 -0.36 0.20 16 29 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 30 H 0.08 1.16 6.91 -51.93 -0.36 0.80 16 31 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.15 2.10 7.62 -52.49 -0.40 1.70 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.14 1.56 7.63 -52.48 -0.40 1.16 16 37 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.42 2.87 8.96 -40.82 -0.37 2.51 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -33.55 346.96 -9.54 -43.09 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.79 Total: 0.24 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.98 Total: -16.26 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.36 Total: -49.57 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -1.74 Total: -47.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 49.56 SS G_CDS: -0.61 Total: 48.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.55 -9.54 -43.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186912945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.063 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds