Wall clock time and date at job start Tue Mar 31 2020 13:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47395 * 2 1 4 4 C 1.46501 * 119.99924 * 275.00425 * 3 2 1 5 5 C 1.50697 * 109.46644 * 274.99499 * 4 3 2 6 6 H 1.07994 * 120.00702 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99446 * 180.02562 * 5 4 3 8 8 N 1.31503 * 120.00342 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99575 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46843 * 90.00038 * 9 7 5 11 11 H 1.48495 * 109.46935 * 209.99925 * 9 7 5 12 12 H 1.48494 * 109.47196 * 329.99943 * 9 7 5 13 13 S 1.65602 * 120.00060 * 94.99804 * 3 2 1 14 14 O 1.42089 * 106.40516 * 156.46370 * 13 3 2 15 15 O 1.42101 * 106.40038 * 23.54282 * 13 3 2 16 16 C 1.76207 * 107.21788 * 270.00561 * 13 3 2 17 17 C 1.38295 * 120.08311 * 270.01996 * 16 13 3 18 18 C 1.38688 * 120.46081 * 180.09063 * 17 16 13 19 19 C 1.39367 * 119.92032 * 359.82628 * 18 17 16 20 20 C 1.39207 * 118.90893 * 0.12415 * 19 18 17 21 21 C 1.37676 * 120.96452 * 359.97438 * 20 19 18 22 22 C 1.51138 * 106.18064 * 179.97438 * 20 19 18 23 23 C 1.51392 * 104.19000 * 0.11132 * 22 20 19 24 24 O 1.21286 * 126.44458 * 179.97438 * 23 22 20 25 25 N 1.34377 * 107.11317 * 359.93165 * 23 22 20 26 26 H 1.08995 * 109.47426 * 60.00116 * 1 2 3 27 27 H 1.09003 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47221 * 299.99855 * 1 2 3 29 29 H 1.09007 * 109.47221 * 240.00145 * 2 1 3 30 30 H 1.08998 * 109.47176 * 120.00355 * 2 1 3 31 31 H 1.08998 * 109.47474 * 34.99611 * 4 3 2 32 32 H 1.09001 * 109.47073 * 154.99770 * 4 3 2 33 33 H 0.97004 * 120.00680 * 180.02562 * 8 7 5 34 34 H 1.08000 * 119.81960 * 0.02562 * 17 16 13 35 35 H 1.08002 * 120.14045 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.04155 * 179.97438 * 21 20 19 37 37 H 1.09002 * 110.51071 * 241.39584 * 22 20 19 38 38 H 1.09004 * 110.51137 * 118.82658 * 22 20 19 39 39 H 0.96996 * 123.87332 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8528 2.3614 -3.0843 8 7 3.0284 3.1870 -3.6909 9 14 5.5099 1.9654 -3.8506 10 1 5.3748 0.7825 -4.7381 11 1 5.9787 3.1292 -4.6448 12 1 6.4933 1.6697 -2.7779 13 16 2.4122 2.1202 1.4287 14 8 3.3283 3.1570 1.1050 15 8 2.7095 1.0799 2.3499 16 6 0.9554 2.9118 2.0254 17 6 0.6783 4.2175 1.6637 18 6 -0.4650 4.8488 2.1303 19 6 -1.3449 4.1642 2.9667 20 6 -1.0520 2.8501 3.3206 21 6 0.0853 2.2283 2.8566 22 6 -2.1785 2.3950 4.2195 23 6 -3.0955 3.5967 4.3028 24 8 -4.1328 3.6696 4.9271 25 7 -2.5436 4.5678 3.5558 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.3617 1.8098 -1.9453 32 1 2.0921 3.1802 -1.0756 33 1 3.2801 3.5896 -4.5368 34 1 1.3570 4.7505 1.0143 35 1 -0.6766 5.8685 1.8443 36 1 0.2981 1.2083 3.1409 37 1 -1.7978 2.1358 5.2075 38 1 -2.7005 1.5461 3.7778 39 1 -2.9336 5.4483 3.4397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186912945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:47 Heat of formation + Delta-G solvation = -96.242735 kcal Electronic energy + Delta-G solvation = -25531.358476 eV Core-core repulsion = 21758.158598 eV Total energy + Delta-G solvation = -3773.199877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56123 -39.61257 -38.24868 -37.63514 -36.94903 -36.75297 -34.66555 -33.44293 -31.49774 -31.00164 -29.17081 -28.44983 -24.89097 -24.31458 -23.34137 -22.97718 -22.30891 -19.84817 -19.14254 -18.92872 -18.28694 -18.07453 -17.79884 -17.16964 -17.14646 -16.39732 -15.89873 -15.52298 -15.29828 -15.13621 -14.78839 -14.61248 -14.42067 -14.31700 -14.22915 -13.77184 -13.60012 -13.50174 -13.29993 -13.05737 -12.96286 -12.69995 -12.65234 -12.40333 -12.26122 -12.15264 -12.10236 -11.95965 -11.69420 -11.53330 -11.40149 -10.54173 -10.03363 -9.75233 -9.47503 -8.15633 -6.26334 -0.57449 -0.31824 0.14536 1.18827 1.42424 1.44766 1.55034 1.78298 2.09449 2.44146 2.48751 2.87652 2.99110 3.15862 3.19654 3.51936 3.65423 3.97642 4.06918 4.16577 4.25714 4.45238 4.51390 4.55100 4.64503 4.71531 4.77096 4.83077 4.95190 5.01299 5.10398 5.22023 5.24915 5.34026 5.47376 5.58631 5.59128 5.73797 5.77358 5.99934 6.16662 6.76673 6.82004 7.42160 8.91647 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.003605 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.687874 B = 7765.797290 C = 8015.817289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.988 5.988 4 C 0.272 3.728 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.014 3.986 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.274 1.274 13 S 2.692 3.308 14 O -0.989 6.989 15 O -0.985 6.985 16 C -0.696 4.696 17 C 0.002 3.998 18 C -0.149 4.149 19 C 0.190 3.810 20 C -0.162 4.162 21 C 0.029 3.971 22 C -0.107 4.107 23 C 0.531 3.469 24 O -0.535 6.535 25 N -0.649 5.649 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.021 0.979 33 H 0.266 0.734 34 H 0.140 0.860 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 -1.089 12.997 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.826 5.826 4 C 0.149 3.851 5 C -0.586 4.586 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.199 1.199 13 S 2.786 3.214 14 O -0.980 6.980 15 O -0.976 6.976 16 C -0.786 4.786 17 C -0.018 4.018 18 C -0.171 4.171 19 C 0.090 3.910 20 C -0.166 4.166 21 C 0.010 3.990 22 C -0.146 4.146 23 C 0.321 3.679 24 O -0.411 6.411 25 N -0.292 5.292 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -11.573 -1.058 13.634 17.915 hybrid contribution 0.206 0.953 -0.986 1.387 sum -11.367 -0.105 12.649 17.006 Atomic orbital electron populations 1.22223 0.94698 1.03461 1.02137 1.21453 0.95289 0.81208 1.03935 1.57306 1.81834 1.22503 1.20980 1.18619 0.95743 0.90614 0.80138 1.21854 1.03332 1.27491 1.05914 0.92884 1.25673 1.00575 0.94779 0.97475 1.69993 1.37689 1.31010 1.17629 0.85645 0.80070 0.78121 0.78430 1.19292 1.20571 1.19878 1.01527 0.74591 0.72914 0.72376 1.93540 1.61349 1.59075 1.84010 1.93467 1.84077 1.56975 1.63075 1.30775 1.24065 1.07522 1.16251 1.20981 0.95209 0.91942 0.93660 1.20830 0.93870 1.02086 1.00301 1.18512 0.86011 0.93967 0.92492 1.20025 0.98125 0.94589 1.03878 1.20072 0.89279 0.99785 0.89903 1.21181 0.92581 0.97893 1.02909 1.20956 0.84653 0.85866 0.76408 1.90826 1.24188 1.82744 1.43385 1.43828 1.21029 1.17876 1.46419 0.93264 0.89163 0.91992 0.90530 0.88989 0.95260 0.96112 0.92474 0.84217 0.81853 0.82109 0.83232 0.83133 0.73374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 10.24 71.98 0.74 -3.31 16 2 C 0.11 3.35 6.40 86.38 0.55 3.90 16 3 N -0.99 -38.70 2.77 -519.86 -1.44 -40.14 16 4 C 0.27 13.21 5.10 85.63 0.44 13.64 16 5 C -0.55 -30.06 9.38 25.60 0.24 -29.82 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.80 5.46 84.66 0.46 1.26 16 8 N -0.92 -52.79 13.28 21.45 0.28 -52.50 16 9 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 S 2.69 101.45 5.65 -56.49 -0.32 101.14 16 14 O -0.99 -45.87 16.26 -128.00 -2.08 -47.95 16 15 O -0.99 -37.27 15.85 -128.00 -2.03 -39.30 16 16 C -0.70 -20.01 5.98 22.32 0.13 -19.88 16 17 C 0.00 0.06 9.53 22.39 0.21 0.27 16 18 C -0.15 -2.99 10.12 22.65 0.23 -2.76 16 19 C 0.19 3.47 7.12 38.42 0.27 3.74 16 20 C -0.16 -2.96 6.36 -19.63 -0.12 -3.09 16 21 C 0.03 0.65 8.42 22.17 0.19 0.84 16 22 C -0.11 -1.37 6.87 29.46 0.20 -1.17 16 23 C 0.53 9.41 8.71 87.94 0.77 10.18 16 24 O -0.53 -13.15 18.03 -3.05 -0.05 -13.20 16 25 N -0.65 -9.84 5.88 -302.98 -1.78 -11.63 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.31 7.01 -2.38 -0.02 1.30 16 29 H 0.08 2.55 8.11 -2.38 -0.02 2.53 16 30 H 0.09 2.63 6.91 -2.39 -0.02 2.61 16 31 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 32 H 0.02 1.07 7.61 -2.39 -0.02 1.06 16 33 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.14 4.06 7.62 -2.91 -0.02 4.04 16 35 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.16 3.00 7.63 -2.91 -0.02 2.98 16 37 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.43 4.64 8.96 -92.71 -0.83 3.81 16 Total: -1.00 -73.78 346.96 -0.82 -74.60 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.26 Total: 9.37 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 4.31 Total: -26.19 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -2.94 Total: -104.27 kcal Atomic # 8 Polarization: -96.29 SS G_CDS: -4.16 Total: -100.45 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 101.45 SS G_CDS: -0.32 Total: 101.14 kcal Total: -73.78 -0.82 -74.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186912945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.642 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds