Wall clock time and date at job start Tue Mar 31 2020 13:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35867 * 116.99881 * 2 1 4 4 C 1.39465 * 119.78075 * 0.02562 * 3 2 1 5 5 C 1.37957 * 120.61526 * 180.02562 * 4 3 2 6 6 C 1.39154 * 120.16999 * 359.96432 * 5 4 3 7 7 C 1.47854 * 120.22081 * 180.29329 * 6 5 4 8 8 C 1.40036 * 120.94480 * 129.44006 * 7 6 5 9 9 N 1.32140 * 118.90649 * 179.69305 * 8 7 6 10 10 C 1.31869 * 120.97514 * 0.62171 * 9 8 7 11 11 C 1.50701 * 118.93866 * 179.67297 * 10 9 8 12 12 F 1.39895 * 109.47415 * 284.97677 * 11 10 9 13 13 F 1.39907 * 109.47062 * 44.97956 * 11 10 9 14 14 F 1.39902 * 109.47100 * 164.97633 * 11 10 9 15 15 N 1.31866 * 122.12376 * 359.65152 * 10 9 8 16 16 C 1.32140 * 120.97333 * 0.02562 * 15 10 9 17 17 C 1.41899 * 119.55998 * 0.02562 * 6 5 4 18 18 C 1.40896 * 120.29785 * 179.97438 * 17 6 5 19 19 H 1.08000 * 120.00111 * 333.05044 * 18 17 6 20 20 C 1.40056 * 119.99725 * 153.04725 * 18 17 6 21 21 N 1.30780 * 119.99790 * 344.43657 * 20 18 17 22 22 Si 1.86802 * 119.99829 * 164.43988 * 20 18 17 23 23 H 1.48505 * 109.47195 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46817 * 119.99864 * 22 20 18 25 25 H 1.48495 * 109.46871 * 240.00005 * 22 20 18 26 26 C 1.37937 * 119.78307 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47206 * 299.99331 * 1 2 3 28 28 H 1.08992 * 109.47746 * 60.00094 * 1 2 3 29 29 H 1.09009 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.69035 * 0.03060 * 4 3 2 31 31 H 1.08004 * 119.91284 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.54825 * 0.02562 * 8 7 6 33 33 H 1.08004 * 120.54132 * 180.02562 * 16 15 10 34 34 H 0.97007 * 119.99550 * 179.97438 * 21 20 18 35 35 H 1.07993 * 120.08959 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2817 2.3773 0.0005 5 6 1.8900 3.6155 0.0000 6 6 3.2782 3.7127 -0.0003 7 6 3.9313 5.0392 0.0057 8 6 4.9344 5.3437 0.9341 9 7 5.4953 6.5397 0.8993 10 6 5.1147 7.4423 0.0165 11 6 5.7804 8.7943 0.0226 12 9 5.3036 9.5440 1.1032 13 9 7.1648 8.6319 0.1423 14 9 5.4908 9.4621 -1.1721 15 7 4.1706 7.2000 -0.8717 16 6 3.5603 6.0287 -0.9131 17 6 4.0627 2.5304 -0.0007 18 6 5.4694 2.6107 -0.0015 19 1 5.9607 3.4738 -0.4258 20 6 6.2305 1.5712 0.5479 21 7 5.6625 0.6842 1.3232 22 14 8.0567 1.4519 0.1734 23 1 8.4522 2.5682 -0.7226 24 1 8.8280 1.5357 1.4396 25 1 8.3413 0.1568 -0.4949 26 6 3.4235 1.2776 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 0.2038 2.3108 0.0015 31 1 1.2873 4.5117 0.0000 32 1 5.2483 4.6113 1.6631 33 1 2.7883 5.8376 -1.6438 34 1 6.1896 -0.0360 1.7034 35 1 4.0097 0.3706 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242664310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:22 Heat of formation + Delta-G solvation = -124.450069 kcal Electronic energy + Delta-G solvation = -26594.861000 eV Core-core repulsion = 22143.137269 eV Total energy + Delta-G solvation = -4451.723731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.96858 -47.49817 -47.45883 -40.69460 -38.96113 -36.80925 -34.01162 -33.49603 -32.64841 -30.09939 -29.22331 -27.33707 -25.81692 -25.41560 -24.27984 -22.82753 -21.33773 -20.31925 -18.72052 -18.40466 -18.39487 -18.01553 -16.83469 -16.41927 -15.81007 -15.37316 -15.02560 -14.92725 -14.82877 -14.60568 -14.25876 -14.11473 -13.89218 -13.61966 -13.59872 -13.46609 -13.17335 -12.99293 -12.71217 -12.48583 -12.06281 -11.88302 -11.63897 -11.41170 -11.31761 -11.01264 -10.61906 -10.55651 -10.41471 -10.09416 -9.92665 -9.50722 -9.13222 -8.99428 -7.84395 -7.24554 -6.98582 -4.78867 0.85394 1.40760 2.48040 2.53547 2.62635 2.93443 2.97678 2.99552 3.60438 3.69742 3.84184 3.93246 4.07945 4.28255 4.59200 4.83915 4.95266 5.10354 5.19846 5.46191 5.54186 5.56674 5.61047 5.75648 5.84517 6.08353 6.30213 6.47152 6.64889 6.71761 6.90187 7.06463 7.11894 7.33747 7.43842 7.62253 7.67641 8.00439 8.12965 8.40391 8.45805 8.54540 9.79409 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.004354 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.001431 B = 6429.787756 C = 8312.029503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.327 6.327 3 C 0.142 3.858 4 C -0.311 4.311 5 C -0.027 4.027 6 C -0.223 4.223 7 C -0.029 4.029 8 C 0.156 3.844 9 N -0.479 5.479 10 C 0.181 3.819 11 C 0.551 3.449 12 F -0.171 7.171 13 F -0.166 7.166 14 F -0.163 7.163 15 N -0.477 5.477 16 C 0.118 3.882 17 C 0.162 3.838 18 C -0.447 4.447 19 H 0.084 0.916 20 C 0.078 3.922 21 N -0.767 5.767 22 Si 0.907 3.093 23 H -0.257 1.257 24 H -0.269 1.269 25 H -0.268 1.268 26 C -0.189 4.189 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.186 0.814 33 H 0.173 0.827 34 H 0.288 0.712 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 4.411 -1.349 5.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.241 6.241 3 C 0.098 3.902 4 C -0.331 4.331 5 C -0.046 4.046 6 C -0.226 4.226 7 C -0.033 4.033 8 C -0.011 4.011 9 N -0.192 5.192 10 C -0.088 4.088 11 C 0.494 3.506 12 F -0.153 7.153 13 F -0.147 7.147 14 F -0.144 7.144 15 N -0.190 5.190 16 C -0.047 4.047 17 C 0.159 3.841 18 C -0.474 4.474 19 H 0.102 0.898 20 C -0.144 4.144 21 N -0.389 5.389 22 Si 0.730 3.270 23 H -0.181 1.181 24 H -0.194 1.194 25 H -0.192 1.192 26 C -0.209 4.209 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.203 0.797 33 H 0.190 0.810 34 H 0.100 0.900 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.593 4.976 -1.195 5.737 hybrid contribution 0.150 -0.721 -0.073 0.740 sum -2.442 4.255 -1.268 5.067 Atomic orbital electron populations 1.22808 0.80386 1.02203 1.00670 1.86024 1.19817 1.28832 1.89440 1.19043 0.92460 0.82678 0.96052 1.20422 0.97741 0.92289 1.22599 1.20325 0.92785 0.95678 0.95793 1.18144 0.92239 0.89611 1.22642 1.20733 0.94372 0.95260 0.92934 1.23702 0.90573 0.90819 0.95965 1.67826 1.26691 1.02723 1.21981 1.22071 0.97026 0.94942 0.94773 1.17157 0.76325 0.83177 0.73927 1.93211 1.88178 1.78024 1.55846 1.93225 1.30219 1.95592 1.95663 1.93215 1.93224 1.81745 1.46213 1.67727 1.06896 1.23117 1.21281 1.23432 0.97609 0.87083 0.96598 1.17158 0.92601 0.88803 0.85524 1.19634 0.90939 1.03987 1.32861 0.89810 1.25995 1.01849 0.94013 0.92538 1.69786 1.38971 1.10689 1.19494 0.86238 0.81109 0.79833 0.79794 1.18055 1.19357 1.19247 1.20534 0.89450 0.99025 1.11862 0.93467 0.93498 0.89678 0.88019 0.88456 0.79726 0.80960 0.90038 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 9.80 101.05 0.99 1.48 16 2 O -0.33 -6.42 10.48 -19.32 -0.20 -6.62 16 3 C 0.14 3.03 6.67 -39.23 -0.26 2.77 16 4 C -0.31 -5.99 9.02 -39.23 -0.35 -6.34 16 5 C -0.03 -0.52 9.53 -39.34 -0.37 -0.89 16 6 C -0.22 -4.56 5.57 -104.22 -0.58 -5.15 16 7 C -0.03 -0.54 4.91 -104.62 -0.51 -1.06 16 8 C 0.16 2.98 9.34 -16.75 -0.16 2.83 16 9 N -0.48 -9.17 10.19 -10.37 -0.11 -9.27 16 10 C 0.18 3.33 7.09 -157.07 -1.11 2.21 16 11 C 0.55 9.08 3.49 36.01 0.13 9.21 16 12 F -0.17 -2.72 17.30 2.25 0.04 -2.68 16 13 F -0.17 -2.72 17.19 2.25 0.04 -2.68 16 14 F -0.16 -2.58 16.86 2.25 0.04 -2.54 16 15 N -0.48 -8.62 9.81 -10.37 -0.10 -8.72 16 16 C 0.12 2.04 10.87 -16.75 -0.18 1.86 16 17 C 0.16 3.71 5.55 -106.58 -0.59 3.11 16 18 C -0.45 -10.15 7.18 -37.90 -0.27 -10.42 16 19 H 0.08 1.90 6.67 -52.49 -0.35 1.55 16 20 C 0.08 1.72 5.17 -17.32 -0.09 1.63 16 21 N -0.77 -17.51 10.99 55.55 0.61 -16.90 16 22 Si 0.91 17.06 29.59 -169.99 -5.03 12.03 16 23 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 26 C -0.19 -4.41 8.59 -38.79 -0.33 -4.74 16 27 H 0.05 0.63 7.64 -51.93 -0.40 0.23 16 28 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.10 1.70 6.25 -52.49 -0.33 1.37 16 31 H 0.10 1.58 8.05 -52.48 -0.42 1.16 16 32 H 0.19 3.52 7.41 -52.49 -0.39 3.13 16 33 H 0.17 2.50 8.06 -52.48 -0.42 2.08 16 34 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 35 H 0.13 3.21 6.26 -52.49 -0.33 2.88 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -24.80 320.95 -6.18 -30.97 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -2.59 Total: 5.06 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.71 Total: -3.49 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.40 Total: -34.89 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.20 Total: -6.62 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.12 Total: -7.90 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -24.80 -6.18 -30.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242664310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.477 kcal (2) G-P(sol) polarization free energy of solvation -24.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds