Wall clock time and date at job start Tue Mar 31 2020 13:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 119.99342 * 2 1 4 4 N 1.34768 * 120.00612 * 179.97438 * 2 1 3 5 5 C 1.46643 * 126.56108 * 0.02562 * 4 2 1 6 6 C 1.50773 * 107.70257 * 179.97438 * 5 4 2 7 7 C 1.38449 * 131.20505 * 180.02562 * 6 5 4 8 8 C 1.38143 * 120.10356 * 180.25916 * 7 6 5 9 9 C 1.38258 * 119.96364 * 359.52277 * 8 7 6 10 10 S 1.76201 * 120.02179 * 180.23764 * 9 8 7 11 11 O 1.42097 * 106.39937 * 23.75594 * 10 9 8 12 12 O 1.42099 * 106.40111 * 156.68035 * 10 9 8 13 13 N 1.65605 * 107.21662 * 270.21810 * 10 9 8 14 14 C 1.46496 * 120.00120 * 64.99779 * 13 10 9 15 15 C 1.50703 * 109.47188 * 164.99633 * 14 13 10 16 16 H 1.08002 * 120.00054 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00043 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99980 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99783 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47230 * 60.00229 * 19 17 15 21 21 H 1.48507 * 109.46894 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47499 * 299.99632 * 19 17 15 23 23 C 1.38148 * 119.95709 * 0.45843 * 9 8 7 24 24 C 1.38065 * 108.86300 * 0.02562 * 6 5 4 25 25 C 1.46634 * 126.56846 * 179.97438 * 4 2 1 26 26 H 1.09001 * 109.46700 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47367 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47046 * 60.00204 * 1 2 3 29 29 H 1.09002 * 109.80797 * 60.43337 * 5 4 2 30 30 H 1.08999 * 109.81012 * 299.52507 * 5 4 2 31 31 H 1.08002 * 119.94450 * 359.97414 * 7 6 5 32 32 H 1.07998 * 120.02322 * 179.72294 * 8 7 6 33 33 H 0.96999 * 119.99546 * 244.99685 * 13 10 9 34 34 H 1.09001 * 109.47438 * 284.99993 * 14 13 10 35 35 H 1.09009 * 109.47062 * 45.00214 * 14 13 10 36 36 H 0.96998 * 120.00070 * 180.02562 * 18 17 15 37 37 H 1.08002 * 119.94394 * 179.80760 * 23 9 8 38 38 H 1.09000 * 109.81013 * 60.47292 * 25 4 2 39 39 H 1.08998 * 109.81008 * 299.57174 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.5978 -2.5125 0.0006 6 6 2.7334 -3.5044 0.0006 7 6 2.7351 -4.8889 0.0002 8 6 3.9310 -5.5803 0.0057 9 6 5.1283 -4.8890 0.0017 10 16 6.6546 -5.7694 0.0024 11 8 6.3780 -7.0524 -0.5421 12 8 7.6269 -4.8873 -0.5415 13 7 7.0785 -6.0143 1.5845 14 6 6.2478 -6.8626 2.4425 15 6 7.0160 -7.2228 3.6880 16 1 8.0224 -6.8560 3.8267 17 6 6.4343 -8.0205 4.6504 18 7 5.2091 -8.4675 4.4812 19 14 7.3864 -8.4663 6.1944 20 1 7.7493 -7.2268 6.9273 21 1 6.5443 -9.3264 7.0642 22 1 8.6220 -9.1996 5.8197 23 6 5.1273 -3.5075 0.0017 24 6 3.9291 -2.8140 0.0011 25 6 3.6377 -1.3346 0.0001 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.9870 -2.6504 -0.8916 30 1 0.9869 -2.6503 0.8927 31 1 1.7999 -5.4291 0.0002 32 1 3.9308 -6.6603 0.0099 33 1 7.8769 -5.5959 1.9429 34 1 5.3411 -6.3238 2.7179 35 1 5.9806 -7.7724 1.9047 36 1 4.7996 -9.0284 5.1584 37 1 6.0627 -2.9677 0.0017 38 1 4.0628 -0.8742 0.8919 39 1 4.0622 -0.8747 -0.8923 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330547292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:21 Heat of formation + Delta-G solvation = -74.615074 kcal Electronic energy + Delta-G solvation = -24675.304108 eV Core-core repulsion = 20903.042076 eV Total energy + Delta-G solvation = -3772.262032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01292 -39.16812 -36.80279 -36.43685 -35.40796 -34.68566 -32.21049 -32.12226 -31.77324 -29.90553 -27.99484 -26.79546 -25.57314 -22.57298 -22.17624 -21.97081 -19.99082 -18.98817 -17.65972 -17.39020 -17.15053 -16.62809 -16.40234 -15.97362 -15.60507 -15.00186 -14.90338 -14.62709 -14.50549 -14.19482 -13.57932 -13.50770 -13.37019 -13.01885 -12.88489 -12.78875 -12.62891 -12.32295 -12.19495 -12.14087 -11.86668 -11.67439 -11.57960 -11.24828 -10.96870 -10.82878 -10.65760 -10.33609 -10.17137 -9.62791 -9.50847 -9.14097 -8.95492 -8.68562 -8.29540 -6.22981 -4.27574 0.60526 0.95139 1.15165 2.23517 2.47967 3.20011 3.23950 3.28550 3.30959 3.66085 3.86303 4.01633 4.18694 4.30649 4.37110 4.67752 4.74753 4.86139 4.95661 4.99626 5.03319 5.14211 5.16470 5.22318 5.27910 5.35670 5.42974 5.56501 5.70471 5.79280 5.96270 6.06259 6.19616 6.36554 6.66654 7.06943 7.21093 7.27058 7.72935 7.73298 7.74912 8.11563 8.76155 9.37645 10.87347 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.003280 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.809623 B = 8534.734497 C = 9468.539192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.535 3.465 3 O -0.541 6.541 4 N -0.618 5.618 5 C 0.141 3.859 6 C -0.064 4.064 7 C -0.113 4.113 8 C -0.006 4.006 9 C -0.661 4.661 10 S 2.691 3.309 11 O -0.959 6.959 12 O -0.977 6.977 13 N -1.101 6.101 14 C 0.246 3.754 15 C -0.531 4.531 16 H 0.066 0.934 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.007 3.993 24 C -0.133 4.133 25 C 0.152 3.848 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.412 0.588 34 H 0.022 0.978 35 H 0.040 0.960 36 H 0.267 0.733 37 H 0.142 0.858 38 H 0.086 0.914 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 10.998 -8.905 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.325 3.675 3 O -0.418 6.418 4 N -0.353 5.353 5 C 0.018 3.982 6 C -0.065 4.065 7 C -0.132 4.132 8 C -0.025 4.025 9 C -0.745 4.745 10 S 2.778 3.222 11 O -0.949 6.949 12 O -0.968 6.968 13 N -0.864 5.864 14 C 0.123 3.877 15 C -0.571 4.571 16 H 0.084 0.916 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.013 4.013 24 C -0.134 4.134 25 C 0.029 3.971 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.154 0.846 32 H 0.168 0.832 33 H 0.246 0.754 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.104 0.896 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.154 11.213 -9.626 17.931 hybrid contribution 0.056 0.081 1.454 1.457 sum -10.098 11.294 -8.172 17.214 Atomic orbital electron populations 1.21883 0.90633 1.04646 1.05603 1.20444 0.90380 0.81206 0.75444 1.90756 1.70700 1.30242 1.50101 1.48071 1.07308 1.05842 1.74077 1.20411 0.94424 0.80128 1.03190 1.20452 0.94771 0.94187 0.97070 1.20565 0.98997 0.91681 1.01968 1.20989 0.90523 1.00886 0.90065 1.31289 1.21635 1.05620 1.16000 1.01899 0.73151 0.73671 0.73444 1.93573 1.85338 1.38652 1.77325 1.93534 1.58200 1.67236 1.77791 1.55448 1.37474 1.63258 1.30234 1.19101 0.89899 0.88938 0.89783 1.21155 1.01003 1.32097 1.02804 0.91612 1.24960 0.95068 0.95454 0.98636 1.69915 1.13256 1.34345 1.35333 0.86468 0.79755 0.78520 0.82161 1.20085 1.21102 1.19979 1.20148 0.97623 0.91788 0.91709 1.20272 0.94168 0.94865 1.04121 1.20171 0.81329 0.92150 1.03437 0.90298 0.88324 0.88389 0.89227 0.89065 0.84590 0.83175 0.75378 0.96035 0.94258 0.92380 0.83978 0.89585 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.23 36.01 0.37 -0.61 16 2 C 0.54 5.67 7.98 -10.99 -0.09 5.59 16 3 O -0.54 -8.03 17.47 5.55 0.10 -7.94 16 4 N -0.62 -6.35 3.34 -176.12 -0.59 -6.94 16 5 C 0.14 1.16 5.85 -5.08 -0.03 1.13 16 6 C -0.06 -0.72 6.22 -104.57 -0.65 -1.37 16 7 C -0.11 -1.32 10.05 -39.54 -0.40 -1.72 16 8 C -0.01 -0.08 9.52 -39.61 -0.38 -0.46 16 9 C -0.66 -10.23 5.94 -39.61 -0.24 -10.46 16 10 S 2.69 47.63 5.74 -107.50 -0.62 47.01 16 11 O -0.96 -19.56 16.76 -57.17 -0.96 -20.52 16 12 O -0.98 -18.11 17.28 -57.17 -0.99 -19.10 16 13 N -1.10 -21.25 5.99 -11.65 -0.07 -21.32 16 14 C 0.25 5.81 5.98 -5.19 -0.03 5.77 16 15 C -0.53 -13.80 9.27 -34.44 -0.32 -14.12 16 16 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 19 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.01 0.10 9.52 -39.54 -0.38 -0.28 16 24 C -0.13 -1.66 6.22 -104.57 -0.65 -2.31 16 25 C 0.15 1.72 6.91 -5.08 -0.04 1.69 16 26 H 0.08 0.30 6.70 -51.93 -0.35 -0.05 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.15 2.14 7.63 -52.49 -0.40 1.74 16 33 H 0.41 7.25 8.54 -34.47 -0.29 6.96 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 1.00 7.75 -51.92 -0.40 0.60 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.14 1.78 7.61 -52.49 -0.40 1.38 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -34.45 348.99 -9.82 -44.27 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.76 Total: 3.44 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -2.92 Total: -15.61 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.08 Total: -52.14 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.85 Total: -47.56 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 47.63 SS G_CDS: -0.62 Total: 47.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.45 -9.82 -44.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330547292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.343 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds