Wall clock time and date at job start Tue Mar 31 2020 13:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21286 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00284 * 0.02618 * 13 12 11 16 16 O 1.42897 * 109.46897 * 179.97438 * 15 13 12 17 17 C 1.35927 * 116.99592 * 180.02562 * 16 15 13 18 18 C 1.38721 * 120.04536 * 359.71828 * 17 16 15 19 19 C 1.38136 * 119.95724 * 179.79414 * 18 17 16 20 20 C 1.38364 * 120.04579 * 0.46398 * 19 18 17 21 21 Cl 1.73595 * 119.96231 * 179.76967 * 20 19 18 22 22 C 1.38369 * 120.08377 * 359.79077 * 20 19 18 23 23 C 1.38144 * 120.03936 * 359.97438 * 22 20 19 24 24 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 25 25 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 26 26 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 28 28 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 29 29 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 30 30 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 31 31 H 1.08997 * 109.46855 * 299.99436 * 15 13 12 32 32 H 1.08994 * 109.46932 * 59.99795 * 15 13 12 33 33 H 1.07999 * 120.01902 * 0.02657 * 18 17 16 34 34 H 1.08004 * 119.98203 * 180.23185 * 19 18 17 35 35 H 1.07996 * 119.97916 * 179.97438 * 22 20 19 36 36 H 1.08000 * 120.01905 * 179.97438 * 23 22 20 37 37 H 1.09004 * 109.60829 * 295.48016 * 24 12 11 38 38 H 1.08995 * 109.61517 * 174.97194 * 24 12 11 39 39 H 1.09001 * 109.60662 * 354.94142 * 25 9 7 40 40 H 1.08998 * 109.61756 * 115.28412 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.7202 -3.2946 3.0655 15 6 6.1049 -1.6278 4.6189 16 8 7.3759 -1.9389 5.1932 17 6 7.7380 -1.2439 6.3038 18 6 6.8898 -0.2784 6.8262 19 6 7.2576 0.4238 7.9574 20 6 8.4754 0.1716 8.5640 21 17 8.9381 1.0596 9.9820 22 6 9.3252 -0.7873 8.0414 23 6 8.9587 -1.4950 6.9130 24 6 4.5005 -3.2084 1.5123 25 6 4.1992 -2.2929 0.3191 26 1 -0.4850 0.8400 -0.0004 27 1 4.2586 0.1714 1.7186 28 1 2.5201 0.1137 2.1099 29 1 2.7995 -1.9334 3.3902 30 1 4.0688 -0.8087 3.9359 31 1 6.0852 -0.5780 4.3263 32 1 5.3199 -1.8157 5.3513 33 1 5.9408 -0.0786 6.3509 34 1 6.5959 1.1729 8.3666 35 1 10.2754 -0.9825 8.5159 36 1 9.6224 -2.2431 6.5052 37 1 3.6505 -3.8667 1.6921 38 1 5.3890 -3.8034 1.3016 39 1 3.8352 -2.8898 -0.5171 40 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:53 Heat of formation + Delta-G solvation = -26.633571 kcal Electronic energy + Delta-G solvation = -24619.880711 eV Core-core repulsion = 20847.655607 eV Total energy + Delta-G solvation = -3772.225104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64826 -40.74164 -38.90321 -38.30808 -37.11306 -35.68941 -33.65324 -32.51375 -32.18017 -31.04820 -29.68103 -28.32639 -25.32260 -24.78015 -23.98455 -23.30897 -22.24935 -20.32961 -19.61715 -18.79713 -17.83537 -17.73810 -17.47458 -17.22185 -16.73603 -16.42037 -16.02056 -15.90395 -15.51214 -15.31295 -14.93665 -14.76399 -14.55228 -14.39591 -14.17213 -13.98278 -13.89777 -13.46202 -13.21285 -12.85941 -12.77649 -12.52320 -12.33111 -12.26813 -12.12886 -11.90129 -11.74042 -11.72830 -11.41413 -10.88718 -10.67116 -10.14932 -9.93273 -9.19231 -8.89860 -8.22754 -5.38779 0.15855 0.21158 1.18033 1.36049 1.40715 1.45667 1.50421 1.54985 2.40475 2.45839 2.57763 2.93976 3.29676 3.37390 3.71276 3.81836 3.92585 4.02320 4.09169 4.13768 4.14416 4.30863 4.33772 4.41470 4.48160 4.56165 4.62570 4.75392 4.87365 4.90948 4.93621 5.00782 5.17907 5.18206 5.23042 5.40543 5.53025 5.85611 6.10939 6.19507 6.35182 6.90113 7.00666 7.62495 8.04403 8.95142 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002688 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.800043 B =10412.276876 C =11618.645044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.898 3.102 4 H -0.308 1.308 5 H -0.292 1.292 6 H -0.234 1.234 7 C -0.266 4.266 8 H 0.050 0.950 9 N -0.613 5.613 10 C 0.122 3.878 11 C 0.092 3.908 12 N -0.597 5.597 13 C 0.513 3.487 14 O -0.572 6.572 15 C 0.042 3.958 16 O -0.312 6.312 17 C 0.120 3.880 18 C -0.198 4.198 19 C -0.070 4.070 20 C -0.084 4.084 21 Cl -0.072 7.072 22 C -0.069 4.069 23 C -0.149 4.149 24 C 0.106 3.894 25 C 0.132 3.868 26 H 0.263 0.737 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.144 0.856 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.795 1.107 19.309 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.208 4.208 3 Si 0.725 3.275 4 H -0.237 1.237 5 H -0.218 1.218 6 H -0.157 1.157 7 C -0.395 4.395 8 H 0.068 0.932 9 N -0.337 5.337 10 C -0.004 4.004 11 C -0.031 4.031 12 N -0.330 5.330 13 C 0.301 3.699 14 O -0.452 6.452 15 C -0.035 4.035 16 O -0.225 6.225 17 C 0.074 3.926 18 C -0.216 4.216 19 C -0.089 4.089 20 C -0.111 4.111 21 Cl -0.043 7.043 22 C -0.088 4.088 23 C -0.168 4.168 24 C -0.018 4.018 25 C 0.006 3.994 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.178 0.822 34 H 0.173 0.827 35 H 0.175 0.825 36 H 0.162 0.838 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 16.223 0.679 19.142 25.101 hybrid contribution -0.313 1.018 -0.629 1.237 sum 15.910 1.697 18.513 24.469 Atomic orbital electron populations 1.70197 1.07773 1.27608 1.51225 1.25688 0.95191 1.00282 0.99615 0.86613 0.81822 0.81893 0.77183 1.23677 1.21829 1.15736 1.18678 0.97350 0.95876 1.27557 0.93222 1.44417 1.17714 1.43597 1.27962 1.21901 0.99354 0.92752 0.86391 1.22608 0.91305 0.91144 0.98093 1.47991 1.17724 1.39164 1.28138 1.20514 0.81123 0.83596 0.84650 1.90694 1.44676 1.39157 1.70650 1.22702 0.86038 1.00435 0.94348 1.86136 1.36221 1.59994 1.40116 1.19365 0.94755 0.91896 0.86566 1.21504 1.02086 0.98757 0.99293 1.21107 0.94746 0.98904 0.94099 1.20981 0.97435 0.99551 0.93130 1.98368 1.92316 1.74759 1.38899 1.21048 0.99946 0.93349 0.94450 1.20583 0.95637 1.03420 0.97129 1.22038 1.01638 0.93152 0.84941 1.21425 0.91020 0.91453 0.95512 0.92755 0.94240 0.91550 0.90372 0.86126 0.86227 0.85620 0.82151 0.82733 0.82532 0.83781 0.91065 0.89219 0.90792 0.95260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.84 13.97 21.65 0.30 -53.54 16 2 C -0.01 -0.51 4.80 84.86 0.41 -0.10 16 3 Si 0.90 40.94 26.47 68.60 1.82 42.75 16 4 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.23 -9.59 4.99 99.48 0.50 -9.09 16 7 C -0.27 -13.87 9.84 84.04 0.83 -13.05 16 8 H 0.05 2.86 8.05 -2.91 -0.02 2.84 16 9 N -0.61 -26.08 2.71 -697.32 -1.89 -27.97 16 10 C 0.12 4.32 4.58 86.56 0.40 4.72 16 11 C 0.09 2.39 6.52 86.56 0.56 2.96 16 12 N -0.60 -17.17 2.95 -817.13 -2.41 -19.58 16 13 C 0.51 14.67 7.77 87.66 0.68 15.35 16 14 O -0.57 -21.15 15.90 15.99 0.25 -20.90 16 15 C 0.04 0.83 3.56 71.24 0.25 1.08 16 16 O -0.31 -7.51 9.67 -73.69 -0.71 -8.22 16 17 C 0.12 2.33 6.69 22.50 0.15 2.48 16 18 C -0.20 -2.95 9.04 22.36 0.20 -2.75 16 19 C -0.07 -0.99 9.82 22.28 0.22 -0.77 16 20 C -0.08 -1.30 6.32 22.33 0.14 -1.16 16 21 Cl -0.07 -1.06 28.95 -2.72 -0.08 -1.14 16 22 C -0.07 -1.04 9.82 22.28 0.22 -0.82 16 23 C -0.15 -2.65 9.99 22.36 0.22 -2.43 16 24 C 0.11 3.34 6.59 86.42 0.57 3.91 16 25 C 0.13 4.77 6.67 86.42 0.58 5.35 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.04 1.37 6.78 -2.39 -0.02 1.35 16 28 H 0.07 2.56 5.60 -2.39 -0.01 2.54 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.12 1.94 5.91 -2.39 -0.01 1.93 16 31 H 0.12 1.75 7.23 -2.39 -0.02 1.74 16 32 H 0.13 1.66 7.44 -2.39 -0.02 1.64 16 33 H 0.16 1.58 6.30 -2.91 -0.02 1.56 16 34 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.09 2.81 6.99 -2.39 -0.02 2.79 16 39 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -69.28 340.98 3.57 -65.71 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.85 Total: 8.11 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 5.43 Total: 14.77 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -3.99 Total: -101.08 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.46 Total: -29.12 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.82 Total: 42.75 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -69.28 3.57 -65.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.074 kcal (2) G-P(sol) polarization free energy of solvation -69.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds