Wall clock time and date at job start Tue Mar 31 2020 13:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86799 * 119.99584 * 2 1 4 4 H 1.48501 * 109.47094 * 240.00061 * 3 2 1 5 5 H 1.48500 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47326 * 120.00274 * 3 2 1 7 7 C 1.38622 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99892 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.35777 * 116.99913 * 174.96152 * 9 7 2 11 11 C 1.38917 * 119.99745 * 5.34342 * 10 9 7 12 12 C 1.38000 * 119.99729 * 180.02562 * 11 10 9 13 13 C 1.38932 * 120.00494 * 0.02562 * 12 11 10 14 14 N 1.39928 * 120.00703 * 180.02562 * 13 12 11 15 15 C 1.34785 * 119.99726 * 35.13567 * 14 13 12 16 16 O 1.21723 * 119.99993 * 355.49149 * 15 14 13 17 17 C 1.46562 * 119.99467 * 175.49584 * 15 14 13 18 18 C 1.40646 * 126.54603 * 359.97438 * 17 15 14 19 19 N 1.30692 * 108.73155 * 180.02562 * 18 17 15 20 20 N 1.39912 * 109.52046 * 0.02562 * 19 18 17 21 21 C 1.36317 * 132.15847 * 180.32483 * 20 19 18 22 22 C 1.35757 * 119.15469 * 180.19447 * 21 20 19 23 23 C 1.39965 * 119.35028 * 359.44736 * 22 21 20 24 24 N 1.31500 * 120.11202 * 0.28391 * 23 22 21 25 25 C 1.33384 * 120.85179 * 359.97438 * 24 23 22 26 26 C 1.38937 * 119.98717 * 0.26994 * 13 12 11 27 27 C 1.37999 * 119.99913 * 359.45066 * 26 13 12 28 28 H 0.97001 * 120.00371 * 359.97438 * 1 2 3 29 29 H 1.07992 * 119.99577 * 0.02562 * 11 10 9 30 30 H 1.08009 * 119.99419 * 179.97438 * 12 11 10 31 31 H 0.96994 * 120.00158 * 215.13484 * 14 13 12 32 32 H 1.08003 * 125.63410 * 0.04915 * 18 17 15 33 33 H 1.08006 * 120.42629 * 359.92311 * 21 20 19 34 34 H 1.07995 * 120.32629 * 179.72803 * 22 21 20 35 35 H 1.08000 * 119.94738 * 180.30006 * 23 22 21 36 36 H 1.08007 * 119.99543 * 179.72640 * 26 13 12 37 37 H 1.07999 * 119.99608 * 180.25490 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2004 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0705 -3.5044 -0.1052 11 6 3.4580 -3.4371 -0.0952 12 6 4.2056 -4.5920 -0.2031 13 6 3.5707 -5.8220 -0.3224 14 7 4.3287 -6.9931 -0.4313 15 6 5.4939 -7.1062 0.2367 16 8 5.9275 -6.1605 0.8686 17 6 6.2388 -8.3680 0.2020 18 6 5.8679 -9.5411 -0.4793 19 7 6.7819 -10.4524 -0.2742 20 7 7.7885 -9.9290 0.5445 21 6 8.9417 -10.4665 1.0339 22 6 9.7418 -9.7069 1.8250 23 6 9.3713 -8.3877 2.1104 24 7 8.2554 -7.8949 1.6193 25 6 7.4620 -8.6373 0.8456 26 6 2.1830 -5.8885 -0.3386 27 6 1.4355 -4.7341 -0.2248 28 1 -0.4851 0.8400 0.0004 29 1 3.9514 -2.4809 -0.0029 30 1 5.2844 -4.5395 -0.1958 31 1 4.0157 -7.7235 -0.9875 32 1 4.9754 -9.6678 -1.0742 33 1 9.2132 -11.4851 0.7989 34 1 10.6575 -10.1151 2.2265 35 1 10.0031 -7.7733 2.7347 36 1 1.6893 -6.8442 -0.4357 37 1 0.3568 -4.7863 -0.2332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044068899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:56 Heat of formation + Delta-G solvation = 100.590991 kcal Electronic energy + Delta-G solvation = -25093.479640 eV Core-core repulsion = 21225.663914 eV Total energy + Delta-G solvation = -3867.815727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.83054 -39.85228 -38.66235 -38.21817 -36.32824 -34.43041 -33.81051 -32.12323 -31.60022 -30.17324 -29.95056 -27.71313 -25.35571 -25.29223 -24.20075 -22.91033 -22.17196 -21.30019 -20.00228 -18.79753 -18.07065 -17.78160 -17.44308 -16.84729 -16.58522 -16.18204 -16.08792 -14.75283 -14.72598 -14.45572 -14.18043 -14.02176 -13.79262 -13.49817 -13.47559 -13.38610 -13.06196 -12.77568 -12.45926 -11.92403 -11.78322 -11.60063 -11.42929 -11.39343 -10.93596 -10.67572 -10.39063 -10.20477 -10.09255 -9.58901 -9.56124 -9.06775 -8.62064 -8.38448 -8.10231 -6.82406 -6.37239 -3.94573 -0.03048 0.34444 1.48606 1.77236 2.26227 2.38375 2.84709 3.19963 3.20677 3.23384 3.31715 3.41307 3.62184 3.75170 3.87002 4.04497 4.34748 4.50296 4.64738 4.71058 4.79374 4.94593 5.16549 5.28136 5.34859 5.46780 5.74367 5.77784 5.86543 5.96401 6.24268 6.29803 6.45784 6.83464 6.85771 6.96560 7.12198 7.20116 7.22997 7.40392 7.53416 7.85494 7.89743 8.08320 8.58803 9.08713 9.79048 10.80813 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.002396 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.824665 B =11684.671666 C =12671.665985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.145 3.855 11 C -0.220 4.220 12 C -0.064 4.064 13 C 0.041 3.959 14 N -0.660 5.660 15 C 0.587 3.413 16 O -0.514 6.514 17 C -0.281 4.281 18 C 0.128 3.872 19 N -0.312 5.312 20 N -0.308 5.308 21 C 0.164 3.836 22 C -0.222 4.222 23 C 0.184 3.816 24 N -0.438 5.438 25 C 0.318 3.682 26 C -0.094 4.094 27 C -0.178 4.178 28 H 0.269 0.731 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.398 0.602 32 H 0.206 0.794 33 H 0.183 0.817 34 H 0.172 0.828 35 H 0.185 0.815 36 H 0.115 0.885 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.482 -22.871 0.794 29.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.091 3.909 11 C -0.240 4.240 12 C -0.084 4.084 13 C -0.051 4.051 14 N -0.304 5.304 15 C 0.374 3.626 16 O -0.389 6.389 17 C -0.297 4.297 18 C -0.053 4.053 19 N -0.134 5.134 20 N -0.077 5.077 21 C 0.028 3.972 22 C -0.246 4.246 23 C 0.001 3.999 24 N -0.148 5.148 25 C 0.086 3.914 26 C -0.114 4.114 27 C -0.198 4.198 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.232 0.768 32 H 0.223 0.777 33 H 0.201 0.799 34 H 0.189 0.811 35 H 0.202 0.798 36 H 0.133 0.867 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.191 -22.358 1.038 28.842 hybrid contribution 0.449 0.245 -0.230 0.561 sum 18.640 -22.114 0.807 28.933 Atomic orbital electron populations 1.70039 1.05911 1.27652 1.46418 1.25264 0.95835 0.98774 0.96667 0.85794 0.78678 0.79824 0.79226 1.19527 1.20355 1.19488 1.21287 0.91829 0.80875 1.52564 0.89094 1.83971 1.34216 1.11378 1.78604 1.19414 0.90283 0.88124 0.93034 1.21110 0.93537 0.98775 1.10533 1.20888 0.99929 0.90289 0.97270 1.17209 0.89784 0.85190 1.12945 1.42895 1.21746 1.17595 1.48178 1.16768 0.80573 0.85994 0.79254 1.90853 1.67317 1.38680 1.42048 1.19469 0.98443 0.97960 1.13862 1.24172 0.97244 0.89164 0.94760 1.77588 0.99125 1.21522 1.15117 1.47048 1.16149 1.11412 1.33100 1.22155 0.82356 1.00578 0.92118 1.21975 1.03263 0.96300 1.03028 1.23691 0.91049 0.92801 0.92365 1.68385 1.04361 1.33356 1.08712 1.20409 0.95109 0.81289 0.94620 1.20351 0.91415 0.97434 1.02250 1.19973 0.99414 0.89869 1.10575 0.92074 0.85261 0.85598 0.76830 0.77743 0.79948 0.81078 0.79786 0.86744 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -11.20 9.48 30.87 0.29 -10.91 16 8 H 0.09 2.45 5.20 -52.48 -0.27 2.17 16 9 O -0.18 -5.20 9.76 0.00 0.00 -5.20 16 10 C 0.15 3.63 6.65 -39.08 -0.26 3.37 16 11 C -0.22 -5.16 9.16 -39.42 -0.36 -5.52 16 12 C -0.06 -1.36 8.68 -39.41 -0.34 -1.70 16 13 C 0.04 0.77 6.30 -83.65 -0.53 0.24 16 14 N -0.66 -9.77 5.32 -11.03 -0.06 -9.83 16 15 C 0.59 9.73 7.62 -12.90 -0.10 9.63 16 16 O -0.51 -10.68 14.17 5.17 0.07 -10.60 16 17 C -0.28 -3.81 6.17 -104.66 -0.65 -4.45 16 18 C 0.13 1.27 11.44 -17.13 -0.20 1.07 16 19 N -0.31 -3.30 12.58 30.76 0.39 -2.91 16 20 N -0.31 -3.15 3.86 -11.97 -0.05 -3.20 16 21 C 0.16 0.92 11.29 -16.45 -0.19 0.74 16 22 C -0.22 -0.86 10.05 -39.82 -0.40 -1.26 16 23 C 0.18 1.27 11.28 -17.05 -0.19 1.07 16 24 N -0.44 -5.56 10.26 -12.00 -0.12 -5.68 16 25 C 0.32 4.17 7.74 -155.83 -1.21 2.97 16 26 C -0.09 -1.70 9.96 -39.41 -0.39 -2.09 16 27 C -0.18 -3.82 9.98 -39.42 -0.39 -4.21 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.13 3.05 5.63 -52.49 -0.30 2.76 16 30 H 0.13 2.70 6.22 -52.48 -0.33 2.37 16 31 H 0.40 4.12 7.75 -40.82 -0.32 3.81 16 32 H 0.21 1.13 7.47 -52.48 -0.39 0.74 16 33 H 0.18 0.34 8.06 -52.48 -0.42 -0.08 16 34 H 0.17 -0.08 8.06 -52.49 -0.42 -0.50 16 35 H 0.19 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -39.54 332.68 -6.88 -46.41 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.85 Total: 5.01 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -5.00 Total: -10.05 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.92 Total: -46.70 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.07 Total: -15.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -39.54 -6.88 -46.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044068899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.004 kcal (2) G-P(sol) polarization free energy of solvation -39.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds