Wall clock time and date at job start Tue Mar 31 2020 13:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86799 * 119.99584 * 2 1 4 4 H 1.48501 * 109.47094 * 240.00061 * 3 2 1 5 5 H 1.48500 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47326 * 120.00274 * 3 2 1 7 7 C 1.38622 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99892 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.35777 * 116.99913 * 174.96152 * 9 7 2 11 11 C 1.38917 * 119.99745 * 5.34342 * 10 9 7 12 12 C 1.38000 * 119.99729 * 180.02562 * 11 10 9 13 13 C 1.38932 * 120.00494 * 0.02562 * 12 11 10 14 14 N 1.39928 * 120.00703 * 180.02562 * 13 12 11 15 15 C 1.34785 * 119.99726 * 35.13567 * 14 13 12 16 16 O 1.21723 * 119.99993 * 355.49149 * 15 14 13 17 17 C 1.46562 * 119.99467 * 175.49584 * 15 14 13 18 18 C 1.40646 * 126.54603 * 359.97438 * 17 15 14 19 19 N 1.30692 * 108.73155 * 180.02562 * 18 17 15 20 20 N 1.39912 * 109.52046 * 0.02562 * 19 18 17 21 21 C 1.36317 * 132.15847 * 180.32483 * 20 19 18 22 22 C 1.35757 * 119.15469 * 180.19447 * 21 20 19 23 23 C 1.39965 * 119.35028 * 359.44736 * 22 21 20 24 24 N 1.31500 * 120.11202 * 0.28391 * 23 22 21 25 25 C 1.33384 * 120.85179 * 359.97438 * 24 23 22 26 26 C 1.38937 * 119.98717 * 0.26994 * 13 12 11 27 27 C 1.37999 * 119.99913 * 359.45066 * 26 13 12 28 28 H 0.97001 * 120.00371 * 359.97438 * 1 2 3 29 29 H 1.07992 * 119.99577 * 0.02562 * 11 10 9 30 30 H 1.08009 * 119.99419 * 179.97438 * 12 11 10 31 31 H 0.96994 * 120.00158 * 215.13484 * 14 13 12 32 32 H 1.08003 * 125.63410 * 0.04915 * 18 17 15 33 33 H 1.08006 * 120.42629 * 359.92311 * 21 20 19 34 34 H 1.07995 * 120.32629 * 179.72803 * 22 21 20 35 35 H 1.08000 * 119.94738 * 180.30006 * 23 22 21 36 36 H 1.08007 * 119.99543 * 179.72640 * 26 13 12 37 37 H 1.07999 * 119.99608 * 180.25490 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2004 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0705 -3.5044 -0.1052 11 6 3.4580 -3.4371 -0.0952 12 6 4.2056 -4.5920 -0.2031 13 6 3.5707 -5.8220 -0.3224 14 7 4.3287 -6.9931 -0.4313 15 6 5.4939 -7.1062 0.2367 16 8 5.9275 -6.1605 0.8686 17 6 6.2388 -8.3680 0.2020 18 6 5.8679 -9.5411 -0.4793 19 7 6.7819 -10.4524 -0.2742 20 7 7.7885 -9.9290 0.5445 21 6 8.9417 -10.4665 1.0339 22 6 9.7418 -9.7069 1.8250 23 6 9.3713 -8.3877 2.1104 24 7 8.2554 -7.8949 1.6193 25 6 7.4620 -8.6373 0.8456 26 6 2.1830 -5.8885 -0.3386 27 6 1.4355 -4.7341 -0.2248 28 1 -0.4851 0.8400 0.0004 29 1 3.9514 -2.4809 -0.0029 30 1 5.2844 -4.5395 -0.1958 31 1 4.0157 -7.7235 -0.9875 32 1 4.9754 -9.6678 -1.0742 33 1 9.2132 -11.4851 0.7989 34 1 10.6575 -10.1151 2.2265 35 1 10.0031 -7.7733 2.7347 36 1 1.6893 -6.8442 -0.4357 37 1 0.3568 -4.7863 -0.2332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044068899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:56 Heat of formation + Delta-G solvation = 71.145961 kcal Electronic energy + Delta-G solvation = -25094.756473 eV Core-core repulsion = 21225.663914 eV Total energy + Delta-G solvation = -3869.092559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.52492 -41.31151 -40.20971 -39.08364 -38.02422 -35.33961 -35.08968 -34.14596 -32.23015 -31.84141 -30.98664 -29.20914 -27.28327 -25.93010 -25.21988 -23.94117 -23.60699 -22.77857 -21.22028 -20.03951 -19.52102 -19.05331 -18.50806 -18.06102 -17.55776 -17.32112 -16.85437 -16.37888 -16.20401 -15.64457 -15.44029 -15.33466 -15.24306 -15.04552 -14.64735 -14.54459 -14.09845 -13.87465 -13.76110 -13.56089 -13.25250 -13.17220 -12.70892 -12.68120 -12.42108 -12.31563 -12.13812 -11.39359 -11.10279 -10.83917 -10.77912 -10.70553 -10.47937 -9.80487 -9.21533 -8.54348 -8.45223 -6.11927 -0.63507 -0.23150 0.54137 0.58869 0.87496 1.06210 1.35074 1.45611 1.50934 2.09873 2.18726 2.22046 2.54017 2.82178 2.86063 2.97739 3.17916 3.50967 3.54133 3.79176 3.89466 4.07550 4.12002 4.15839 4.30422 4.47683 4.51622 4.55381 4.69801 4.81986 4.97634 5.07407 5.11197 5.16732 5.38572 5.40210 5.50732 5.64116 5.72769 6.03957 6.15880 6.21071 6.57874 6.67227 6.99142 7.35754 7.78892 8.77204 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.002396 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.824665 B =11684.671666 C =12671.665985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.016 2.984 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.414 4.414 8 H 0.095 0.905 9 O -0.227 6.227 10 C 0.106 3.894 11 C -0.229 4.229 12 C -0.078 4.078 13 C 0.068 3.932 14 N -0.646 5.646 15 C 0.588 3.412 16 O -0.567 6.567 17 C -0.329 4.329 18 C 0.146 3.854 19 N -0.325 5.325 20 N -0.312 5.312 21 C 0.153 3.847 22 C -0.197 4.197 23 C 0.188 3.812 24 N -0.506 5.506 25 C 0.306 3.694 26 C -0.076 4.076 27 C -0.179 4.179 28 H 0.273 0.727 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.423 0.577 32 H 0.244 0.756 33 H 0.224 0.776 34 H 0.226 0.774 35 H 0.216 0.784 36 H 0.170 0.830 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.225 -26.661 0.752 34.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.835 3.165 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.113 0.887 9 O -0.133 6.133 10 C 0.055 3.945 11 C -0.248 4.248 12 C -0.098 4.098 13 C -0.026 4.026 14 N -0.293 5.293 15 C 0.379 3.621 16 O -0.446 6.446 17 C -0.346 4.346 18 C -0.035 4.035 19 N -0.147 5.147 20 N -0.079 5.079 21 C 0.019 3.981 22 C -0.219 4.219 23 C 0.009 3.991 24 N -0.219 5.219 25 C 0.071 3.929 26 C -0.096 4.096 27 C -0.198 4.198 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.262 0.738 32 H 0.260 0.740 33 H 0.241 0.759 34 H 0.243 0.757 35 H 0.233 0.767 36 H 0.188 0.812 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.997 -26.270 0.983 33.645 hybrid contribution -0.028 0.959 -0.122 0.967 sum 20.969 -25.311 0.861 32.880 Atomic orbital electron populations 1.70171 1.07792 1.28830 1.48809 1.26516 0.96886 1.02502 0.95894 0.84697 0.77460 0.74577 0.79781 1.18316 1.19163 1.18541 1.21720 0.92354 0.81680 1.53302 0.88726 1.83932 1.35484 1.12351 1.81571 1.19932 0.90982 0.88464 0.95124 1.21078 0.93384 0.99151 1.11237 1.20924 0.99654 0.90954 0.98261 1.17366 0.90579 0.85646 1.09006 1.42753 1.21108 1.16924 1.48465 1.17245 0.80323 0.86545 0.78020 1.90820 1.68603 1.40782 1.44402 1.19227 0.99873 0.97801 1.17699 1.24680 0.97917 0.87324 0.93610 1.77522 0.99547 1.21841 1.15758 1.47284 1.17115 1.10636 1.32890 1.23183 0.80877 1.02539 0.91519 1.22578 1.04084 0.94414 1.00832 1.24499 0.89363 0.94646 0.90607 1.68398 1.06938 1.35286 1.11253 1.20559 0.95267 0.82525 0.94523 1.20794 0.90795 0.98467 0.99548 1.20329 1.00374 0.89552 1.09567 0.91782 0.86711 0.86134 0.73766 0.74021 0.75936 0.75728 0.76736 0.81238 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.55 13.67 21.61 0.30 -57.26 16 2 C -0.02 -1.20 5.49 84.82 0.47 -0.73 16 3 Si 1.02 44.91 29.55 68.60 2.03 46.94 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.41 -25.33 9.48 67.91 0.64 -24.69 16 8 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -14.12 9.76 -22.90 -0.22 -14.35 16 10 C 0.11 5.54 6.65 22.59 0.15 5.69 16 11 C -0.23 -11.35 9.16 22.38 0.20 -11.15 16 12 C -0.08 -3.40 8.68 22.38 0.19 -3.21 16 13 C 0.07 2.45 6.30 38.18 0.24 2.69 16 14 N -0.65 -17.96 5.32 -307.01 -1.63 -19.60 16 15 C 0.59 19.41 7.62 86.41 0.66 20.07 16 16 O -0.57 -24.40 14.17 -4.42 -0.06 -24.46 16 17 C -0.33 -8.68 6.17 -19.89 -0.12 -8.81 16 18 C 0.15 2.57 11.44 85.45 0.98 3.55 16 19 N -0.33 -6.08 12.58 -56.58 -0.71 -6.80 16 20 N -0.31 -5.65 3.86 -191.77 -0.74 -6.39 16 21 C 0.15 1.11 11.29 83.42 0.94 2.05 16 22 C -0.20 -0.61 10.05 22.11 0.22 -0.39 16 23 C 0.19 2.11 11.28 85.16 0.96 3.07 16 24 N -0.51 -12.63 10.26 -191.86 -1.97 -14.60 16 25 C 0.31 7.81 7.74 133.99 1.04 8.85 16 26 C -0.08 -2.56 9.96 22.38 0.22 -2.34 16 27 C -0.18 -7.64 9.98 22.37 0.22 -7.42 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.12 5.88 5.63 -2.91 -0.02 5.86 16 30 H 0.12 5.42 6.22 -2.91 -0.02 5.40 16 31 H 0.42 7.34 7.75 -92.71 -0.72 6.62 16 32 H 0.24 1.77 7.47 -2.91 -0.02 1.75 16 33 H 0.22 -0.35 8.06 -2.91 -0.02 -0.37 16 34 H 0.23 -1.77 8.06 -2.91 -0.02 -1.79 16 35 H 0.22 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.13 5.28 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -96.97 332.68 4.45 -92.52 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.44 Total: 16.74 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 7.02 Total: -12.76 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.76 Total: -104.64 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.29 Total: -38.81 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -96.97 4.45 -92.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044068899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.668 kcal (2) G-P(sol) polarization free energy of solvation -96.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds