Wall clock time and date at job start Tue Mar 31 2020 14:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47043 * 2 1 4 4 C 1.46504 * 119.99783 * 274.81813 * 3 2 1 5 5 C 1.50701 * 109.46973 * 263.66529 * 4 3 2 6 6 H 1.07996 * 120.00347 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99814 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00219 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99891 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47300 * 89.99736 * 9 7 5 11 11 H 1.48497 * 109.46900 * 209.99636 * 9 7 5 12 12 H 1.48506 * 109.46980 * 329.99545 * 9 7 5 13 13 C 1.34781 * 120.00294 * 94.81976 * 3 2 1 14 14 O 1.21355 * 119.99593 * 354.62487 * 13 3 2 15 15 C 1.49350 * 120.00068 * 174.62181 * 13 3 2 16 16 O 1.21377 * 120.00232 * 0.24691 * 15 13 3 17 17 N 1.34774 * 119.99954 * 180.24015 * 15 13 3 18 18 C 1.39724 * 120.00183 * 184.85447 * 17 15 13 19 19 C 1.38928 * 120.06657 * 326.22417 * 18 17 15 20 20 C 1.38192 * 119.91253 * 180.02562 * 19 18 17 21 21 Cl 1.73598 * 119.97633 * 180.02562 * 20 19 18 22 22 C 1.38435 * 120.04768 * 359.97438 * 20 19 18 23 23 C 1.38252 * 120.13720 * 0.27166 * 22 20 19 24 24 C 1.38125 * 120.09187 * 359.49430 * 23 22 20 25 25 C 1.50691 * 120.02773 * 180.22774 * 24 23 22 26 26 H 1.08998 * 109.47171 * 299.99673 * 1 2 3 27 27 H 1.09000 * 109.47042 * 60.00532 * 1 2 3 28 28 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47694 * 239.99770 * 2 1 3 30 30 H 1.09004 * 109.47516 * 119.99541 * 2 1 3 31 31 H 1.08991 * 109.47166 * 23.66896 * 4 3 2 32 32 H 1.09005 * 109.46815 * 143.67007 * 4 3 2 33 33 H 0.96999 * 120.00514 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00019 * 4.85186 * 17 15 13 35 35 H 1.08006 * 120.04423 * 0.05015 * 19 18 17 36 36 H 1.08002 * 119.92773 * 180.02562 * 22 20 19 37 37 H 1.08000 * 119.94922 * 179.74720 * 23 22 20 38 38 H 1.09001 * 109.47621 * 270.25702 * 25 24 23 39 39 H 1.09001 * 109.47346 * 30.25921 * 25 24 23 40 40 H 1.09003 * 109.47414 * 150.25655 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1620 2.1073 -1.2643 5 6 3.5894 2.0131 -1.7383 6 1 4.3167 1.4666 -1.1563 7 6 3.9666 2.6236 -2.9156 8 7 5.2121 2.5410 -3.3296 9 14 2.7084 3.5682 -3.9227 10 1 2.6870 4.9867 -3.4837 11 1 3.0735 3.5005 -5.3605 12 1 1.3644 2.9684 -3.7244 13 6 2.3354 1.9840 1.1631 14 8 2.1250 1.4190 2.2163 15 6 2.9457 3.3471 1.1557 16 8 3.1520 3.9140 0.1024 17 7 3.2672 3.9477 2.3185 18 6 3.7434 5.2614 2.3180 19 6 4.5281 5.7169 1.2660 20 6 4.9977 7.0166 1.2690 21 17 5.9778 7.5877 -0.0450 22 6 4.6863 7.8637 2.3187 23 6 3.9098 7.4109 3.3691 24 6 3.4333 6.1145 3.3696 25 6 2.5828 5.6241 4.5128 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5011 1.6691 -2.0121 32 1 1.8974 3.1541 -1.1142 33 1 5.4775 2.9708 -4.1576 34 1 3.1681 3.4681 3.1558 35 1 4.7704 5.0563 0.4466 36 1 5.0540 8.8792 2.3189 37 1 3.6721 8.0732 4.1885 38 1 3.2230 5.1996 5.2861 39 1 2.0159 6.4576 4.9276 40 1 1.8940 4.8603 4.1517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123842328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:51 Heat of formation + Delta-G solvation = -53.435389 kcal Electronic energy + Delta-G solvation = -25645.984667 eV Core-core repulsion = 21872.597350 eV Total energy + Delta-G solvation = -3773.387318 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.22912 -40.71958 -39.25549 -37.71382 -37.34711 -35.69427 -34.66898 -33.41877 -32.22989 -31.08720 -29.63090 -27.81863 -26.43574 -24.64772 -24.33753 -22.89811 -22.16073 -20.77569 -19.18319 -19.07807 -18.48443 -17.77939 -17.14009 -16.82333 -16.74347 -16.18042 -16.09029 -15.53613 -15.16579 -15.12229 -14.75211 -14.74250 -14.45115 -14.34888 -13.91770 -13.79883 -13.58049 -13.42869 -13.24844 -12.77694 -12.66710 -12.58085 -12.45581 -12.32211 -12.23393 -12.10434 -11.93777 -11.88857 -11.67962 -11.37788 -10.77574 -10.31423 -9.72842 -9.65194 -9.18992 -8.26744 -6.27584 -0.07627 0.17114 0.56211 1.10360 1.31118 1.37699 1.39443 1.43954 2.13712 2.35337 2.48981 2.60504 3.11314 3.30572 3.80176 3.88746 4.08375 4.12603 4.22453 4.31859 4.34830 4.47418 4.65899 4.67168 4.75588 4.84395 4.89259 4.90794 5.00068 5.04429 5.20215 5.25457 5.29893 5.31465 5.37271 5.45358 5.50260 5.84167 6.01177 6.07808 6.35039 6.68443 6.71004 6.98355 7.33718 8.90102 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.005698 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.358408 B = 4912.536642 C = 7139.976949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.561 5.561 4 C 0.211 3.789 5 C -0.505 4.505 6 H 0.026 0.974 7 C 0.024 3.976 8 N -0.945 5.945 9 Si 0.933 3.067 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.235 1.235 13 C 0.508 3.492 14 O -0.552 6.552 15 C 0.487 3.513 16 O -0.475 6.475 17 N -0.639 5.639 18 C 0.141 3.859 19 C -0.140 4.140 20 C -0.038 4.038 21 Cl -0.082 7.082 22 C -0.117 4.117 23 C -0.079 4.079 24 C -0.098 4.098 25 C -0.115 4.115 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.429 0.571 35 H 0.114 0.886 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 7.959 15.731 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.291 5.291 4 C 0.090 3.910 5 C -0.544 4.544 6 H 0.044 0.956 7 C -0.174 4.174 8 N -0.586 5.586 9 Si 0.757 3.243 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.158 1.158 13 C 0.291 3.709 14 O -0.433 6.433 15 C 0.269 3.731 16 O -0.345 6.345 17 N -0.289 5.289 18 C 0.046 3.954 19 C -0.161 4.161 20 C -0.065 4.065 21 Cl -0.053 7.053 22 C -0.136 4.136 23 C -0.098 4.098 24 C -0.101 4.101 25 C -0.172 4.172 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.269 0.731 35 H 0.132 0.868 36 H 0.177 0.823 37 H 0.198 0.802 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.796 8.053 15.184 18.872 hybrid contribution 0.539 -0.020 -1.093 1.219 sum -7.257 8.033 14.091 17.769 Atomic orbital electron populations 1.22041 0.93442 1.03764 1.01922 1.21751 0.96106 0.80458 1.03630 1.47999 1.59692 1.14788 1.06613 1.19987 0.96119 0.93558 0.81357 1.21177 0.94296 1.32528 1.06385 0.95559 1.25544 0.96805 0.96443 0.98614 1.70029 1.18827 1.46188 1.23582 0.85944 0.81097 0.79555 0.77730 1.20644 1.20842 1.15822 1.19786 0.79970 0.86601 0.84573 1.90643 1.55709 1.66416 1.30485 1.20535 0.80415 0.87797 0.84373 1.90923 1.48639 1.64440 1.30534 1.42994 1.63313 1.12618 1.09944 1.17585 0.96436 0.84737 0.96616 1.21163 0.98489 0.96100 1.00325 1.20893 0.99094 0.94398 0.92134 1.98365 1.69452 1.88777 1.48704 1.21367 0.99578 1.00415 0.92213 1.21256 0.95662 0.94409 0.98443 1.20185 0.99844 0.93471 0.96582 1.20868 0.98567 1.02959 0.94756 0.92980 0.92458 0.88715 0.89710 0.89934 0.93443 0.93048 0.92739 0.73090 0.86811 0.82265 0.80178 0.88917 0.88222 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 10.24 71.98 0.74 -3.19 16 2 C 0.10 3.32 6.11 86.38 0.53 3.85 16 3 N -0.56 -22.80 2.47 -827.85 -2.05 -24.85 16 4 C 0.21 9.80 3.85 85.63 0.33 10.13 16 5 C -0.51 -28.68 8.34 25.60 0.21 -28.47 16 6 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 7 C 0.02 1.40 5.47 84.66 0.46 1.86 16 8 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 9 Si 0.93 44.85 27.47 68.60 1.88 46.73 16 10 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 13 C 0.51 20.45 7.67 87.24 0.67 21.12 16 14 O -0.55 -21.31 16.04 -3.26 -0.05 -21.37 16 15 C 0.49 19.77 7.58 87.24 0.66 20.43 16 16 O -0.47 -22.81 9.46 -3.33 -0.03 -22.84 16 17 N -0.64 -20.55 4.75 -304.85 -1.45 -22.00 16 18 C 0.14 4.34 6.30 38.21 0.24 4.59 16 19 C -0.14 -5.15 8.49 22.42 0.19 -4.96 16 20 C -0.04 -1.19 6.32 22.31 0.14 -1.05 16 21 Cl -0.08 -2.68 28.95 -2.72 -0.08 -2.76 16 22 C -0.12 -2.56 9.83 22.32 0.22 -2.34 16 23 C -0.08 -1.39 9.69 22.25 0.22 -1.18 16 24 C -0.10 -2.11 5.90 -19.73 -0.12 -2.22 16 25 C -0.12 -1.62 9.47 71.23 0.67 -0.95 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 30 H 0.08 2.63 7.36 -2.38 -0.02 2.62 16 31 H 0.05 2.06 7.08 -2.39 -0.02 2.04 16 32 H 0.05 2.49 5.27 -2.38 -0.01 2.47 16 33 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 34 H 0.43 11.41 7.28 -92.71 -0.67 10.73 16 35 H 0.11 5.32 6.11 -2.91 -0.02 5.30 16 36 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 0.91 8.09 -2.39 -0.02 0.89 16 40 H 0.06 0.99 7.16 -2.39 -0.02 0.98 16 Total: -1.00 -74.05 350.62 4.04 -70.01 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.35 Total: 19.10 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 5.17 Total: 17.62 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -3.20 Total: -106.50 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.08 Total: -44.21 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -0.08 Total: -2.76 kcal Total: -74.05 4.04 -70.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123842328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.578 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds