Wall clock time and date at job start Tue Mar 31 2020 14:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47259 * 2 1 4 4 N 1.46494 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.36875 * 120.00499 * 263.75145 * 4 3 2 6 6 H 1.07999 * 120.00385 * 194.02585 * 5 4 3 7 7 C 1.39041 * 120.00099 * 14.01967 * 5 4 3 8 8 N 1.31368 * 119.99477 * 13.04406 * 7 5 4 9 9 Si 1.86799 * 120.00457 * 193.04158 * 7 5 4 10 10 H 1.48497 * 109.46746 * 60.00178 * 9 7 5 11 11 H 1.48497 * 109.47141 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46921 * 300.00288 * 9 7 5 13 13 C 1.34782 * 119.99705 * 83.75530 * 4 3 2 14 14 O 1.21599 * 119.99857 * 5.23719 * 13 4 3 15 15 C 1.47664 * 120.00036 * 185.23400 * 13 4 3 16 16 C 1.39608 * 120.12679 * 46.26934 * 15 13 4 17 17 C 1.38525 * 119.78592 * 179.74631 * 16 15 13 18 18 N 1.40004 * 119.98003 * 180.25115 * 17 16 15 19 19 C 1.34772 * 120.00026 * 33.09643 * 18 17 16 20 20 C 1.50700 * 120.00090 * 184.48597 * 19 18 17 21 21 O 1.21297 * 119.99823 * 4.48557 * 19 18 17 22 22 C 1.39042 * 120.04212 * 0.50201 * 17 16 15 23 23 C 1.38177 * 120.25902 * 359.77284 * 22 17 16 24 24 C 1.38157 * 120.21520 * 359.97438 * 23 22 17 25 25 Cl 1.73594 * 120.02457 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47452 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47167 * 299.99728 * 1 2 3 28 28 H 1.09009 * 109.47185 * 59.99506 * 1 2 3 29 29 H 1.09005 * 109.46843 * 240.00411 * 2 1 3 30 30 H 1.08995 * 109.47215 * 120.00458 * 2 1 3 31 31 H 1.08995 * 109.46371 * 60.00311 * 3 2 1 32 32 H 1.08995 * 109.47381 * 300.00357 * 3 2 1 33 33 H 0.97005 * 120.00190 * 179.97438 * 8 7 5 34 34 H 1.07995 * 120.11120 * 359.97342 * 16 15 13 35 35 H 0.96994 * 119.99803 * 213.09421 * 18 17 16 36 36 H 1.09001 * 109.46964 * 90.00213 * 20 19 18 37 37 H 1.09001 * 109.46994 * 209.99567 * 20 19 18 38 38 H 1.08994 * 109.47107 * 329.99856 * 20 19 18 39 39 H 1.08001 * 119.86918 * 179.74185 * 22 17 16 40 40 H 1.07996 * 119.88930 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.5717 1.1792 6 1 5.2448 1.7985 1.1687 7 6 3.5244 1.4110 2.3899 8 7 2.3190 0.8894 2.4132 9 14 4.3456 1.9368 3.9832 10 1 4.6461 3.3901 3.9289 11 1 3.4354 1.6612 5.1236 12 1 5.6084 1.1766 4.1634 13 6 4.1793 1.3153 -1.1594 14 8 3.5755 1.2965 -2.2147 15 6 5.6513 1.1990 -1.1488 16 6 6.2790 0.3287 -0.2557 17 6 7.6601 0.2213 -0.2555 18 7 8.2935 -0.6541 0.6348 19 6 7.6920 -1.8069 0.9890 20 6 8.3259 -2.7008 2.0235 21 8 6.6403 -2.1250 0.4751 22 6 8.4180 0.9861 -1.1352 23 6 7.7989 1.8522 -2.0160 24 6 6.4219 1.9640 -2.0290 25 17 5.6494 3.0542 -3.1372 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.8554 0.7769 3.2579 34 1 5.6897 -0.2615 0.4302 35 1 9.1653 -0.4308 0.9967 36 1 7.9669 -2.4216 3.0140 37 1 8.0597 -3.7380 1.8197 38 1 9.4094 -2.5894 1.9850 39 1 9.4948 0.9031 -1.1298 40 1 8.3934 2.4437 -2.6965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159734280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:57 Heat of formation + Delta-G solvation = -36.451838 kcal Electronic energy + Delta-G solvation = -26052.557144 eV Core-core repulsion = 22279.906289 eV Total energy + Delta-G solvation = -3772.650856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35711 -38.95798 -37.59000 -35.93092 -35.09870 -34.33451 -32.36192 -31.57270 -30.66951 -30.42789 -28.16942 -25.84971 -24.80980 -23.03186 -22.43279 -20.64324 -20.16003 -19.32632 -18.14486 -16.92825 -16.40474 -16.14223 -15.79236 -15.49357 -14.72009 -14.40124 -14.31405 -13.86250 -13.54251 -13.42846 -13.15266 -12.99436 -12.81994 -12.70005 -12.29578 -12.09494 -11.86215 -11.82632 -11.47244 -11.35492 -11.11707 -10.94193 -10.70993 -10.49393 -10.40675 -10.26171 -10.18871 -9.90013 -9.64699 -9.54653 -8.82887 -8.55449 -8.29471 -7.75847 -7.67962 -6.33945 -3.89910 1.32540 1.62422 2.68017 2.73239 3.06073 3.14866 3.15840 3.16233 3.70527 4.02364 4.27384 4.67799 4.76832 5.01850 5.08024 5.15982 5.26459 5.31309 5.64611 5.70331 5.76641 5.89117 6.16921 6.22830 6.23919 6.34646 6.48871 6.53856 6.61421 6.77722 6.83029 6.97256 7.08749 7.14792 7.22921 7.31216 7.46305 7.53352 7.75184 7.87098 8.21807 8.45244 9.03550 9.50282 9.91932 10.59156 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.008542 B = 0.006977 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.048004 B = 4012.368065 C = 5671.889882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.140 3.860 4 N -0.424 5.424 5 C -0.326 4.326 6 H 0.097 0.903 7 C 0.035 3.965 8 N -0.855 5.855 9 Si 0.920 3.080 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.275 1.275 13 C 0.486 3.514 14 O -0.587 6.587 15 C -0.055 4.055 16 C -0.062 4.062 17 C 0.129 3.871 18 N -0.673 5.673 19 C 0.504 3.496 20 C -0.169 4.169 21 O -0.512 6.512 22 C -0.136 4.136 23 C -0.106 4.106 24 C -0.021 4.021 25 Cl -0.059 7.059 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.036 0.964 33 H 0.269 0.731 34 H 0.159 0.841 35 H 0.408 0.592 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 -1.762 1.370 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.018 3.982 4 N -0.140 5.140 5 C -0.454 4.454 6 H 0.115 0.885 7 C -0.170 4.170 8 N -0.493 5.493 9 Si 0.746 3.254 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.200 1.200 13 C 0.274 3.726 14 O -0.474 6.474 15 C -0.059 4.059 16 C -0.083 4.083 17 C 0.035 3.965 18 N -0.319 5.319 19 C 0.291 3.709 20 C -0.229 4.229 21 O -0.386 6.386 22 C -0.157 4.157 23 C -0.126 4.126 24 C -0.050 4.050 25 Cl -0.030 7.030 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.177 0.823 35 H 0.244 0.756 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.146 0.854 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.417 -2.008 0.639 11.610 hybrid contribution 0.918 0.433 1.080 1.482 sum 12.335 -1.575 1.719 12.553 Atomic orbital electron populations 1.21565 0.97556 0.99696 1.00363 1.21763 0.93755 0.98318 1.01721 1.21359 0.79250 0.97052 1.00588 1.43670 1.05905 1.59365 1.05047 1.19722 0.95411 1.47357 0.82901 0.88505 1.25243 0.96280 0.96166 0.99294 1.70076 1.12706 1.39741 1.26821 0.86104 0.78899 0.79362 0.81004 1.19833 1.20708 1.20029 1.17691 0.85707 0.84525 0.84698 1.90664 1.68813 1.57218 1.30665 1.19957 0.95639 0.95751 0.94569 1.21530 0.92552 0.96829 0.97420 1.17688 0.92185 0.93626 0.93022 1.43555 1.22593 1.19813 1.45926 1.20993 0.85464 0.81167 0.83230 1.21871 1.01639 1.00496 0.98846 1.90832 1.22157 1.72527 1.53101 1.20702 0.99339 0.99473 0.96211 1.20607 0.92050 0.99984 0.99932 1.20929 0.92264 0.96275 0.95504 1.98351 1.81777 1.61851 1.61047 0.94372 0.92941 0.94475 0.95016 0.88756 0.87919 0.94604 0.92021 0.82307 0.75627 0.88429 0.88638 0.90223 0.85376 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.91 37.15 0.37 -2.29 16 2 C -0.12 -2.79 5.66 -26.73 -0.15 -2.94 16 3 C 0.14 3.51 4.56 -4.04 -0.02 3.49 16 4 N -0.42 -11.03 2.63 -115.95 -0.31 -11.34 16 5 C -0.33 -8.24 7.87 -15.00 -0.12 -8.35 16 6 H 0.10 2.39 5.76 -52.49 -0.30 2.09 16 7 C 0.03 0.85 5.13 -17.45 -0.09 0.76 16 8 N -0.86 -21.13 8.07 55.50 0.45 -20.68 16 9 Si 0.92 19.06 29.57 -169.99 -5.03 14.03 16 10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 13 C 0.49 12.62 6.71 -12.41 -0.08 12.53 16 14 O -0.59 -16.41 15.34 5.28 0.08 -16.33 16 15 C -0.05 -1.23 4.95 -104.96 -0.52 -1.75 16 16 C -0.06 -1.31 6.28 -38.96 -0.24 -1.56 16 17 C 0.13 2.11 6.28 -83.72 -0.53 1.58 16 18 N -0.67 -8.56 5.34 -9.88 -0.05 -8.61 16 19 C 0.50 7.21 7.69 -10.99 -0.08 7.12 16 20 C -0.17 -1.48 10.31 36.01 0.37 -1.11 16 21 O -0.51 -10.25 14.73 5.54 0.08 -10.17 16 22 C -0.14 -1.89 9.95 -39.31 -0.39 -2.28 16 23 C -0.11 -1.64 9.81 -39.63 -0.39 -2.03 16 24 C -0.02 -0.42 6.34 -39.04 -0.25 -0.66 16 25 Cl -0.06 -1.16 27.06 -51.86 -1.40 -2.57 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 2.42 6.25 -51.93 -0.32 2.10 16 31 H 0.10 2.63 5.83 -51.93 -0.30 2.33 16 32 H 0.04 0.91 7.55 -51.93 -0.39 0.52 16 33 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 34 H 0.16 3.80 5.42 -52.49 -0.28 3.51 16 35 H 0.41 3.30 8.81 -40.82 -0.36 2.94 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -32.00 346.58 -7.99 -39.98 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.91 Total: 7.95 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.12 Total: 2.51 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.09 Total: -40.63 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: 0.16 Total: -26.50 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.40 Total: -2.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.00 -7.99 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159734280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.531 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds