Wall clock time and date at job start Tue Mar 31 2020 14:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 H 1.09002 * 109.47408 * 54.99743 * 3 2 1 5 5 C 1.50698 * 109.47434 * 175.00122 * 3 2 1 6 6 H 1.08003 * 120.00141 * 119.99541 * 5 3 2 7 7 C 1.37873 * 119.99870 * 299.99869 * 5 3 2 8 8 N 1.31518 * 120.00138 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99937 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47249 * 89.99897 * 9 7 5 11 11 H 1.48500 * 109.47142 * 210.00049 * 9 7 5 12 12 H 1.48493 * 109.47358 * 330.00080 * 9 7 5 13 13 N 1.46500 * 109.46694 * 294.99946 * 3 2 1 14 14 C 1.34775 * 120.00022 * 85.00196 * 13 3 2 15 15 O 1.21561 * 120.00356 * 359.97438 * 14 13 3 16 16 C 1.47784 * 119.99990 * 179.97438 * 14 13 3 17 17 C 1.39540 * 120.12393 * 359.72182 * 16 14 13 18 18 C 1.38548 * 119.79238 * 179.79153 * 17 16 14 19 19 N 1.40006 * 119.97841 * 180.23046 * 18 17 16 20 20 C 1.34775 * 119.99662 * 145.14986 * 19 18 17 21 21 C 1.50702 * 119.99841 * 184.61203 * 20 19 18 22 22 O 1.21288 * 120.00083 * 4.61292 * 20 19 18 23 23 C 1.39015 * 120.03938 * 0.48350 * 18 17 16 24 24 C 1.38162 * 120.24244 * 359.75006 * 23 18 17 25 25 C 1.38178 * 120.21251 * 0.02562 * 24 23 18 26 26 Cl 1.73602 * 120.02114 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.46849 * 60.00188 * 1 2 3 28 28 H 1.08995 * 109.47041 * 299.99850 * 1 2 3 29 29 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47305 * 119.99534 * 2 1 3 31 31 H 1.08995 * 109.47041 * 240.00150 * 2 1 3 32 32 H 0.96998 * 119.99999 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00089 * 264.99100 * 13 3 2 34 34 H 1.07997 * 120.10382 * 0.02562 * 17 16 14 35 35 H 0.96995 * 120.00134 * 325.15379 * 19 18 17 36 36 H 1.08996 * 109.47382 * 359.97438 * 21 20 19 37 37 H 1.09002 * 109.47091 * 120.00356 * 21 20 19 38 38 H 1.09010 * 109.47022 * 239.99978 * 21 20 19 39 39 H 1.07991 * 119.87646 * 179.72004 * 23 18 17 40 40 H 1.08004 * 119.88814 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8786 1.2279 8 7 5.4540 0.8798 1.3358 9 14 3.0963 0.1103 2.5707 10 1 2.8744 -1.3258 2.2646 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3415 2.6318 -0.4323 16 6 0.0443 3.3254 -2.6296 17 6 0.9358 3.3693 -3.7022 18 6 0.5607 3.9871 -4.8843 19 7 1.4503 4.0292 -5.9646 20 6 0.9827 3.9476 -7.2260 21 6 1.9453 3.8881 -8.3840 22 8 -0.2127 3.9222 -7.4292 23 6 -0.6965 4.5698 -4.9965 24 6 -1.5785 4.5315 -3.9338 25 6 -1.2168 3.9140 -2.7518 26 17 -2.3288 3.8694 -1.4194 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 5.8771 0.4814 2.1124 33 1 2.2719 2.1232 -1.9978 34 1 1.9137 2.9198 -3.6126 35 1 2.4030 4.1169 -5.8052 36 1 2.9680 3.9226 -8.0085 37 1 1.7919 2.9613 -8.9368 38 1 1.7723 4.7380 -9.0444 39 1 -0.9844 5.0546 -5.9175 40 1 -2.5537 4.9864 -4.0270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183971262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:42 Heat of formation + Delta-G solvation = -39.959536 kcal Electronic energy + Delta-G solvation = -25034.960657 eV Core-core repulsion = 21262.157696 eV Total energy + Delta-G solvation = -3772.802961 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86834 -39.61342 -38.11306 -36.32955 -35.32204 -34.80788 -32.65074 -31.95682 -31.07493 -30.66491 -28.63399 -27.51233 -24.30620 -22.88133 -22.54401 -21.63494 -20.40401 -19.62426 -18.42434 -17.55189 -16.80682 -16.68285 -16.10627 -15.75933 -15.43749 -15.06849 -14.64587 -14.46850 -14.16132 -14.05726 -13.49457 -13.29967 -13.08940 -12.96163 -12.70199 -12.51955 -12.26787 -12.02128 -11.88698 -11.75129 -11.56616 -11.10177 -10.98444 -10.76197 -10.63077 -10.37382 -10.17299 -9.93503 -9.52296 -9.25177 -9.15073 -8.95081 -8.77322 -8.28363 -8.05489 -6.23798 -4.26394 0.74842 0.94738 2.17597 2.29855 2.70183 3.11730 3.22836 3.34962 3.40399 3.81276 3.90642 4.30060 4.31507 4.57851 4.73916 4.77010 4.96891 5.10126 5.10696 5.12697 5.24735 5.40559 5.63278 5.69063 5.93577 5.98276 6.04114 6.07525 6.08120 6.20275 6.58976 6.67165 6.71496 6.84378 6.97891 6.99548 7.24407 7.28526 7.48907 7.71418 8.11260 8.47564 8.72124 8.88675 9.37256 10.88137 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.003900 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.578631 B = 7176.983345 C = 8761.509386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.244 3.756 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.079 0.921 7 C 0.080 3.920 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.694 5.694 14 C 0.540 3.460 15 O -0.519 6.519 16 C -0.099 4.099 17 C -0.101 4.101 18 C 0.134 3.866 19 N -0.671 5.671 20 C 0.511 3.489 21 C -0.170 4.170 22 O -0.529 6.529 23 C -0.092 4.092 24 C -0.105 4.105 25 C -0.002 4.002 26 Cl -0.032 7.032 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.267 0.733 33 H 0.391 0.609 34 H 0.141 0.859 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 7.057 -17.041 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.343 5.343 14 C 0.325 3.675 15 O -0.397 6.397 16 C -0.103 4.103 17 C -0.122 4.122 18 C 0.040 3.960 19 N -0.318 5.318 20 C 0.300 3.700 21 C -0.229 4.229 22 O -0.405 6.405 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.030 4.030 26 Cl -0.003 7.003 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.159 0.841 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.166 0.834 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.010 6.925 -16.317 19.884 hybrid contribution 0.471 -0.524 0.515 0.872 sum -8.539 6.402 -15.802 19.068 Atomic orbital electron populations 1.21877 0.96798 0.99069 1.02397 1.22285 0.94472 0.99849 1.01064 1.19176 0.95618 0.88514 0.82617 0.93049 1.21024 0.88557 1.39888 1.07863 0.90267 1.24816 0.94856 0.95084 0.97649 1.69862 1.08691 1.44478 1.29866 0.86910 0.81038 0.79979 0.80876 1.20240 1.22189 1.18344 1.46102 1.14438 1.55719 1.18008 1.17955 0.83133 0.79767 0.86692 1.90842 1.50760 1.58824 1.39263 1.19872 0.93476 1.01324 0.95674 1.21097 1.00376 0.98894 0.91848 1.17627 0.91805 0.98770 0.87750 1.43685 1.10602 1.72717 1.04757 1.21055 0.90086 0.74900 0.83927 1.21862 0.98788 1.05751 0.96513 1.90734 1.16744 1.48213 1.84781 1.21325 0.92599 0.98106 0.99238 1.20947 1.00676 0.99906 0.90915 1.21031 0.91467 0.99807 0.90725 1.98410 1.60012 1.96729 1.45100 0.92840 0.92770 0.95030 0.92767 0.92365 0.92272 0.77457 0.84128 0.74804 0.90059 0.88171 0.88321 0.83423 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.63 1.83 -69.08 -0.13 5.50 16 4 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -14.04 9.31 -34.44 -0.32 -14.36 16 6 H 0.08 2.16 7.98 -52.48 -0.42 1.75 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 9 Si 0.88 21.50 24.41 -169.99 -4.15 17.35 16 10 H -0.28 -6.53 6.83 56.52 0.39 -6.14 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.69 -13.32 4.97 -55.90 -0.28 -13.60 16 14 C 0.54 10.11 6.33 -12.36 -0.08 10.04 16 15 O -0.52 -11.05 11.09 5.31 0.06 -10.99 16 16 C -0.10 -1.52 5.87 -104.96 -0.62 -2.13 16 17 C -0.10 -1.24 9.45 -38.98 -0.37 -1.61 16 18 C 0.13 1.51 6.29 -83.72 -0.53 0.98 16 19 N -0.67 -5.44 5.34 -9.88 -0.05 -5.49 16 20 C 0.51 4.45 7.78 -10.99 -0.09 4.36 16 21 C -0.17 -0.73 10.39 36.01 0.37 -0.36 16 22 O -0.53 -6.76 14.53 5.55 0.08 -6.68 16 23 C -0.09 -1.09 8.69 -39.32 -0.34 -1.43 16 24 C -0.11 -1.28 9.81 -39.63 -0.39 -1.67 16 25 C 0.00 -0.02 6.35 -39.06 -0.25 -0.27 16 26 Cl -0.03 -0.50 26.01 -51.86 -1.35 -1.85 16 27 H 0.05 1.07 5.64 -51.93 -0.29 0.78 16 28 H 0.05 1.15 7.84 -51.93 -0.41 0.75 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.25 3.22 -51.93 -0.17 1.09 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.39 6.51 6.57 -40.82 -0.27 6.24 16 34 H 0.14 1.47 6.40 -52.49 -0.34 1.14 16 35 H 0.42 2.04 8.66 -40.82 -0.35 1.69 16 36 H 0.08 0.17 7.92 -51.93 -0.41 -0.25 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.15 1.71 6.21 -52.49 -0.33 1.38 16 40 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -33.32 337.98 -7.09 -40.41 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.62 Total: 5.50 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.64 Total: -4.60 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.44 Total: -44.22 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.14 Total: -17.68 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.15 Total: 17.35 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.35 Total: -1.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.32 -7.09 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183971262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.455 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds