Wall clock time and date at job start Tue Mar 31 2020 14:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 H 1.09002 * 109.47408 * 54.99743 * 3 2 1 5 5 C 1.50698 * 109.47434 * 175.00122 * 3 2 1 6 6 H 1.08003 * 120.00141 * 119.99541 * 5 3 2 7 7 C 1.37873 * 119.99870 * 299.99869 * 5 3 2 8 8 N 1.31518 * 120.00138 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99937 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47249 * 89.99897 * 9 7 5 11 11 H 1.48500 * 109.47142 * 210.00049 * 9 7 5 12 12 H 1.48493 * 109.47358 * 330.00080 * 9 7 5 13 13 N 1.46500 * 109.46694 * 294.99946 * 3 2 1 14 14 C 1.34775 * 120.00022 * 85.00196 * 13 3 2 15 15 O 1.21561 * 120.00356 * 359.97438 * 14 13 3 16 16 C 1.47784 * 119.99990 * 179.97438 * 14 13 3 17 17 C 1.39540 * 120.12393 * 359.72182 * 16 14 13 18 18 C 1.38548 * 119.79238 * 179.79153 * 17 16 14 19 19 N 1.40006 * 119.97841 * 180.23046 * 18 17 16 20 20 C 1.34775 * 119.99662 * 145.14986 * 19 18 17 21 21 C 1.50702 * 119.99841 * 184.61203 * 20 19 18 22 22 O 1.21288 * 120.00083 * 4.61292 * 20 19 18 23 23 C 1.39015 * 120.03938 * 0.48350 * 18 17 16 24 24 C 1.38162 * 120.24244 * 359.75006 * 23 18 17 25 25 C 1.38178 * 120.21251 * 0.02562 * 24 23 18 26 26 Cl 1.73602 * 120.02114 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.46849 * 60.00188 * 1 2 3 28 28 H 1.08995 * 109.47041 * 299.99850 * 1 2 3 29 29 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47305 * 119.99534 * 2 1 3 31 31 H 1.08995 * 109.47041 * 240.00150 * 2 1 3 32 32 H 0.96998 * 119.99999 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00089 * 264.99100 * 13 3 2 34 34 H 1.07997 * 120.10382 * 0.02562 * 17 16 14 35 35 H 0.96995 * 120.00134 * 325.15379 * 19 18 17 36 36 H 1.08996 * 109.47382 * 359.97438 * 21 20 19 37 37 H 1.09002 * 109.47091 * 120.00356 * 21 20 19 38 38 H 1.09010 * 109.47022 * 239.99978 * 21 20 19 39 39 H 1.07991 * 119.87646 * 179.72004 * 23 18 17 40 40 H 1.08004 * 119.88814 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8786 1.2279 8 7 5.4540 0.8798 1.3358 9 14 3.0963 0.1103 2.5707 10 1 2.8744 -1.3258 2.2646 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3415 2.6318 -0.4323 16 6 0.0443 3.3254 -2.6296 17 6 0.9358 3.3693 -3.7022 18 6 0.5607 3.9871 -4.8843 19 7 1.4503 4.0292 -5.9646 20 6 0.9827 3.9476 -7.2260 21 6 1.9453 3.8881 -8.3840 22 8 -0.2127 3.9222 -7.4292 23 6 -0.6965 4.5698 -4.9965 24 6 -1.5785 4.5315 -3.9338 25 6 -1.2168 3.9140 -2.7518 26 17 -2.3288 3.8694 -1.4194 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 5.8771 0.4814 2.1124 33 1 2.2719 2.1232 -1.9978 34 1 1.9137 2.9198 -3.6126 35 1 2.4030 4.1169 -5.8052 36 1 2.9680 3.9226 -8.0085 37 1 1.7919 2.9613 -8.9368 38 1 1.7723 4.7380 -9.0444 39 1 -0.9844 5.0546 -5.9175 40 1 -2.5537 4.9864 -4.0270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183971262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:41 Heat of formation + Delta-G solvation = -63.432662 kcal Electronic energy + Delta-G solvation = -25035.978528 eV Core-core repulsion = 21262.157696 eV Total energy + Delta-G solvation = -3773.820832 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78260 -40.86254 -39.26226 -37.46214 -36.99703 -35.69865 -34.44473 -33.62480 -31.96292 -31.74037 -29.38716 -29.34202 -25.57447 -24.48751 -23.64745 -22.81996 -21.66917 -21.10700 -19.69490 -18.59569 -18.13101 -17.77289 -17.50444 -17.10756 -16.50087 -16.41117 -16.09934 -15.65200 -15.41012 -15.08279 -14.86334 -14.63875 -14.52699 -13.96459 -13.74134 -13.62721 -13.60694 -13.25867 -13.18316 -12.98295 -12.86136 -12.75584 -12.57359 -12.39616 -12.09277 -11.83975 -11.34283 -11.24971 -11.21488 -11.02961 -10.84212 -10.41012 -10.19690 -9.73828 -9.21308 -8.36688 -6.41340 -0.34833 -0.01896 1.19369 1.28124 1.36950 1.45688 1.46346 1.89672 2.05113 2.27375 2.37911 2.68628 2.99972 3.58582 3.63454 3.79704 4.06985 4.12184 4.25456 4.28130 4.33900 4.47218 4.52676 4.62697 4.68749 4.70364 4.87346 4.99978 5.02990 5.07157 5.09617 5.14543 5.21850 5.25681 5.42223 5.53381 5.65091 5.69181 6.15857 6.37828 6.59839 6.85677 7.06835 7.21181 7.43390 8.78107 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.003900 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.578631 B = 7176.983345 C = 8761.509386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.252 3.748 4 H 0.025 0.975 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.034 3.966 8 N -0.932 5.932 9 Si 0.931 3.069 10 H -0.261 1.261 11 H -0.295 1.295 12 H -0.261 1.261 13 N -0.693 5.693 14 C 0.540 3.460 15 O -0.548 6.548 16 C -0.118 4.118 17 C -0.094 4.094 18 C 0.141 3.859 19 N -0.661 5.661 20 C 0.508 3.492 21 C -0.162 4.162 22 O -0.573 6.573 23 C -0.090 4.090 24 C -0.098 4.098 25 C -0.016 4.016 26 Cl -0.049 7.049 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.269 0.731 33 H 0.404 0.596 34 H 0.158 0.842 35 H 0.432 0.568 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 6.997 -19.100 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.042 0.958 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.166 4.166 8 N -0.571 5.571 9 Si 0.759 3.241 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.186 1.186 13 N -0.343 5.343 14 C 0.327 3.673 15 O -0.427 6.427 16 C -0.122 4.122 17 C -0.116 4.116 18 C 0.046 3.954 19 N -0.308 5.308 20 C 0.299 3.701 21 C -0.221 4.221 22 O -0.452 6.452 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.045 4.045 26 Cl -0.020 7.020 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.240 0.760 34 H 0.176 0.824 35 H 0.272 0.728 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.171 0.829 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.137 6.873 -18.413 21.674 hybrid contribution 0.548 -0.408 0.998 1.209 sum -8.589 6.465 -17.415 20.466 Atomic orbital electron populations 1.21753 0.95356 1.00375 1.01591 1.22207 0.95675 0.98573 1.01025 1.18796 0.93341 0.89504 0.83591 0.95761 1.21260 0.90151 1.38437 1.06978 0.92089 1.25462 0.95616 0.95883 0.99673 1.69959 1.10119 1.46167 1.30830 0.86116 0.79446 0.79981 0.78564 1.18701 1.22268 1.18554 1.45880 1.15250 1.55969 1.17169 1.18389 0.82299 0.79046 0.87580 1.90824 1.51446 1.59778 1.40673 1.19622 0.94659 1.02939 0.95000 1.21181 1.00496 0.98558 0.91316 1.17694 0.92105 0.97464 0.88154 1.43733 1.11153 1.72004 1.03955 1.21911 0.90186 0.73349 0.84624 1.21916 0.98977 1.06457 0.94733 1.90718 1.18910 1.50211 1.85332 1.21503 0.92765 0.97659 0.99099 1.21138 1.01634 0.99016 0.89899 1.21167 0.91180 1.01025 0.91081 1.98399 1.60561 1.96888 1.46168 0.92892 0.94353 0.92582 0.93822 0.91270 0.92132 0.76010 0.82419 0.72775 0.87280 0.87623 0.87180 0.82875 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.51 71.98 0.61 -4.60 16 2 C -0.14 -5.81 5.11 30.60 0.16 -5.66 16 3 C 0.25 11.61 1.83 44.25 0.08 11.69 16 4 H 0.02 1.27 6.63 -2.39 -0.02 1.25 16 5 C -0.53 -27.94 9.31 25.60 0.24 -27.71 16 6 H 0.06 3.37 7.98 -2.91 -0.02 3.35 16 7 C 0.03 1.86 5.45 84.65 0.46 2.32 16 8 N -0.93 -54.67 13.96 21.45 0.30 -54.37 16 9 Si 0.93 44.33 24.41 68.60 1.67 46.01 16 10 H -0.26 -11.75 6.83 99.48 0.68 -11.07 16 11 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.26 -12.41 6.53 99.48 0.65 -11.76 16 13 N -0.69 -26.26 4.97 -449.03 -2.23 -28.49 16 14 C 0.54 20.07 6.33 86.77 0.55 20.62 16 15 O -0.55 -23.46 11.09 -3.91 -0.04 -23.51 16 16 C -0.12 -3.50 5.87 -20.08 -0.12 -3.62 16 17 C -0.09 -2.15 9.45 22.66 0.21 -1.93 16 18 C 0.14 2.84 6.29 38.10 0.24 3.08 16 19 N -0.66 -8.79 5.34 -303.57 -1.62 -10.41 16 20 C 0.51 7.49 7.78 87.66 0.68 8.17 16 21 C -0.16 -0.83 10.39 71.24 0.74 -0.09 16 22 O -0.57 -13.62 14.53 -3.05 -0.04 -13.66 16 23 C -0.09 -1.94 8.69 22.44 0.19 -1.75 16 24 C -0.10 -2.23 9.81 22.24 0.22 -2.01 16 25 C -0.02 -0.45 6.35 22.61 0.14 -0.31 16 26 Cl -0.05 -1.56 26.01 -2.72 -0.07 -1.63 16 27 H 0.05 2.06 5.64 -2.39 -0.01 2.05 16 28 H 0.04 1.60 7.84 -2.39 -0.02 1.58 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.95 3.22 -2.39 -0.01 1.95 16 31 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.40 13.05 6.57 -92.71 -0.61 12.44 16 34 H 0.16 2.94 6.40 -2.91 -0.02 2.92 16 35 H 0.43 2.76 8.66 -92.71 -0.80 1.96 16 36 H 0.11 -0.04 7.92 -2.39 -0.02 -0.05 16 37 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 39 H 0.15 3.24 6.21 -2.92 -0.02 3.23 16 40 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -72.79 337.98 1.99 -70.79 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.38 Total: 17.07 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 4.41 Total: -1.80 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -3.55 Total: -93.27 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.09 Total: -37.17 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.67 Total: 46.01 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -72.79 1.99 -70.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183971262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.358 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds