Wall clock time and date at job start Tue Mar 31 2020 13:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38145 * 120.03102 * 2 1 4 4 C 1.38267 * 120.09840 * 180.25260 * 3 2 1 5 5 C 1.38318 * 120.16085 * 359.77096 * 4 3 2 6 6 C 1.38180 * 120.05946 * 359.95313 * 5 4 3 7 7 Cl 1.73601 * 120.04459 * 179.97438 * 6 5 4 8 8 C 1.38867 * 120.03098 * 179.72995 * 2 1 3 9 9 N 1.39769 * 120.08163 * 359.97438 * 8 2 1 10 10 C 1.34781 * 119.99798 * 223.19632 * 9 8 2 11 11 O 1.21380 * 120.00169 * 3.38919 * 10 9 8 12 12 C 1.49351 * 119.99437 * 183.39501 * 10 9 8 13 13 O 1.21358 * 120.00474 * 5.73835 * 12 10 9 14 14 N 1.34776 * 119.99517 * 185.74311 * 12 10 9 15 15 C 1.46498 * 120.00106 * 5.14836 * 14 12 10 16 16 C 1.46505 * 119.99857 * 185.15225 * 14 12 10 17 17 H 1.08999 * 109.46571 * 359.97438 * 16 14 12 18 18 C 1.53000 * 109.47326 * 119.99992 * 16 14 12 19 19 C 1.50701 * 109.47025 * 239.99750 * 16 14 12 20 20 H 1.08002 * 119.99852 * 2.30878 * 19 16 14 21 21 C 1.37871 * 120.00270 * 182.30329 * 19 16 14 22 22 N 1.31508 * 120.00378 * 153.95373 * 21 19 16 23 23 Si 1.86807 * 119.99837 * 334.23939 * 21 19 16 24 24 H 1.48504 * 109.47005 * 179.72130 * 23 21 19 25 25 H 1.48507 * 109.46651 * 299.71757 * 23 21 19 26 26 H 1.48490 * 109.47316 * 59.71965 * 23 21 19 27 27 H 1.08994 * 109.47183 * 270.27580 * 1 2 3 28 28 H 1.09004 * 109.46600 * 30.27306 * 1 2 3 29 29 H 1.08994 * 109.47092 * 150.27093 * 1 2 3 30 30 H 1.07996 * 119.95287 * 359.97438 * 3 2 1 31 31 H 1.07993 * 119.92406 * 179.74551 * 4 3 2 32 32 H 1.07993 * 119.96881 * 179.97438 * 5 4 3 33 33 H 0.96997 * 120.00005 * 43.18710 * 9 8 2 34 34 H 1.08994 * 109.47347 * 275.37529 * 15 14 12 35 35 H 1.09001 * 109.47319 * 35.38216 * 15 14 12 36 36 H 1.09002 * 109.46996 * 155.37656 * 15 14 12 37 37 H 1.08996 * 109.47303 * 174.55505 * 18 16 14 38 38 H 1.09004 * 109.46792 * 294.55075 * 18 16 14 39 39 H 1.09000 * 109.47140 * 54.54802 * 18 16 14 40 40 H 0.97008 * 119.99965 * 355.28048 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5811 1.1976 -0.0053 5 6 4.2774 0.0025 -0.0058 6 6 3.5926 -1.1976 0.0000 7 17 4.4670 -2.6973 -0.0014 8 6 2.2020 -1.2022 0.0057 9 7 1.5056 -2.4140 0.0119 10 6 1.9079 -3.4183 0.8157 11 8 2.8367 -3.2501 1.5787 12 6 1.2107 -4.7383 0.7674 13 8 0.3522 -4.9410 -0.0661 14 7 1.5351 -5.7043 1.6495 15 6 2.4888 -5.4235 2.7255 16 6 0.9339 -7.0351 1.5323 17 1 0.2555 -7.0534 0.6793 18 6 2.0362 -8.0768 1.3303 19 6 0.1673 -7.3526 2.7903 20 1 0.1003 -6.6202 3.5812 21 6 -0.4486 -8.5780 2.9316 22 7 -0.6636 -9.0715 4.1315 23 14 -0.9707 -9.5409 1.4184 24 1 -1.5993 -10.8193 1.8377 25 1 -1.9481 -8.7419 0.6362 26 1 0.2199 -9.8269 0.5784 27 1 -0.3633 0.0049 1.0276 28 1 -0.3633 0.8876 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6582 2.1311 -0.0004 31 1 4.1187 2.1342 -0.0094 32 1 5.3573 0.0074 -0.0103 33 1 0.7327 -2.5322 -0.5621 34 1 3.5049 -5.5581 2.3547 35 1 2.3596 -4.3964 3.0667 36 1 2.3115 -6.1072 3.5557 37 1 1.5989 -9.0751 1.3398 38 1 2.5277 -7.9046 0.3727 39 1 2.7674 -7.9926 2.1342 40 1 -0.3282 -8.6069 4.9142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299727703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:08 Heat of formation + Delta-G solvation = -40.126962 kcal Electronic energy + Delta-G solvation = -25518.456152 eV Core-core repulsion = 21745.645931 eV Total energy + Delta-G solvation = -3772.810221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24683 -40.73673 -39.30765 -37.67481 -37.44099 -36.05382 -34.80799 -33.48861 -32.14349 -30.83722 -28.14709 -27.89377 -26.94278 -26.16709 -23.88977 -22.64124 -22.03512 -20.82304 -19.55570 -19.17229 -18.55651 -17.87914 -17.44899 -16.98526 -16.77539 -16.28294 -15.87430 -15.35776 -15.24449 -15.08335 -14.84654 -14.58129 -14.42478 -14.27662 -13.96433 -13.80916 -13.56961 -13.50890 -13.33227 -13.21488 -12.60787 -12.52196 -12.41247 -12.37679 -12.16811 -11.96494 -11.89883 -11.62714 -11.30076 -11.12407 -10.44674 -10.33907 -9.75048 -9.61491 -9.34137 -8.79064 -6.40631 -0.08081 0.16276 0.50434 1.11641 1.33984 1.45027 1.52554 1.72238 2.07634 2.43687 2.47185 2.59898 2.93307 3.21229 3.67637 3.93906 4.18544 4.22437 4.28698 4.31455 4.43715 4.50887 4.51833 4.65869 4.69785 4.72577 4.81307 4.87120 5.03117 5.06412 5.16291 5.19399 5.22375 5.33388 5.42644 5.46655 5.72890 5.81413 5.91059 5.99867 6.33343 6.47815 6.65166 6.89935 7.30712 8.53623 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023220 B = 0.003515 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.583158 B = 7964.054912 C = 8484.418347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.097 4.097 4 C -0.104 4.104 5 C -0.110 4.110 6 C -0.056 4.056 7 Cl -0.064 7.064 8 C 0.123 3.877 9 N -0.640 5.640 10 C 0.503 3.497 11 O -0.485 6.485 12 C 0.493 3.507 13 O -0.560 6.560 14 N -0.559 5.559 15 C 0.095 3.905 16 C 0.236 3.764 17 H 0.042 0.958 18 C -0.154 4.154 19 C -0.625 4.625 20 H 0.029 0.971 21 C 0.005 3.995 22 N -0.914 5.914 23 Si 1.064 2.936 24 H -0.281 1.281 25 H -0.275 1.275 26 H -0.238 1.238 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.149 0.851 33 H 0.426 0.574 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 22.519 -10.963 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.129 4.129 6 C -0.085 4.085 7 Cl -0.034 7.034 8 C 0.028 3.972 9 N -0.289 5.289 10 C 0.285 3.715 11 O -0.358 6.358 12 C 0.275 3.725 13 O -0.441 6.441 14 N -0.289 5.289 15 C -0.047 4.047 16 C 0.134 3.866 17 H 0.059 0.941 18 C -0.212 4.212 19 C -0.663 4.663 20 H 0.048 0.952 21 C -0.198 4.198 22 N -0.548 5.548 23 Si 0.886 3.114 24 H -0.207 1.207 25 H -0.201 1.201 26 H -0.162 1.162 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.185 0.815 31 H 0.186 0.814 32 H 0.167 0.833 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.370 20.912 -11.272 25.188 hybrid contribution 0.412 0.729 0.928 1.250 sum 8.781 21.641 -10.344 25.543 Atomic orbital electron populations 1.20825 0.88901 1.04202 1.03249 1.20085 0.97589 0.90761 1.01067 1.21417 0.94474 0.97626 0.97982 1.21541 0.94345 0.98168 0.98164 1.21235 1.01434 0.90010 1.00239 1.21216 0.90972 0.88789 1.07509 1.98384 1.75961 1.33174 1.95929 1.17559 0.89432 0.85632 1.04556 1.42959 1.32951 1.11041 1.41926 1.19948 0.84284 0.85132 0.82148 1.90817 1.26516 1.82297 1.36125 1.20199 0.83790 0.85769 0.82749 1.90672 1.32931 1.81565 1.38901 1.47941 1.42023 1.11713 1.27237 1.21908 0.91361 1.02067 0.89393 1.19110 0.92094 0.78204 0.97191 0.94067 1.22408 0.99060 0.99595 1.00184 1.22107 1.38857 1.02441 1.02880 0.95238 1.26854 0.93282 0.96188 1.03448 1.70973 1.45723 1.38584 0.99488 0.83896 0.78650 0.75582 0.73310 1.20688 1.20111 1.16200 0.90764 0.88034 0.92044 0.81526 0.81377 0.83336 0.73408 0.91631 0.89977 0.91999 0.91628 0.93179 0.92704 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.77 71.24 0.70 -0.94 16 2 C -0.09 -1.66 5.90 -19.73 -0.12 -1.78 16 3 C -0.10 -1.20 9.70 22.25 0.22 -0.99 16 4 C -0.10 -1.27 10.04 22.30 0.22 -1.05 16 5 C -0.11 -1.97 9.82 22.27 0.22 -1.75 16 6 C -0.06 -1.39 5.84 22.45 0.13 -1.25 16 7 Cl -0.06 -1.84 24.23 -2.72 -0.07 -1.91 16 8 C 0.12 3.00 6.06 38.22 0.23 3.24 16 9 N -0.64 -18.01 4.78 -304.74 -1.46 -19.47 16 10 C 0.50 17.45 6.47 87.24 0.56 18.01 16 11 O -0.48 -17.26 9.55 -3.34 -0.03 -17.29 16 12 C 0.49 20.48 7.72 87.24 0.67 21.15 16 13 O -0.56 -25.23 15.84 -3.27 -0.05 -25.29 16 14 N -0.56 -24.62 2.75 -828.49 -2.28 -26.90 16 15 C 0.09 3.71 8.09 127.77 1.03 4.75 16 16 C 0.24 11.53 2.23 44.24 0.10 11.62 16 17 H 0.04 2.14 5.90 -2.39 -0.01 2.12 16 18 C -0.15 -6.64 8.91 71.98 0.64 -6.00 16 19 C -0.63 -35.17 8.19 25.60 0.21 -34.96 16 20 H 0.03 1.82 7.76 -2.91 -0.02 1.80 16 21 C 0.00 0.26 5.14 84.65 0.44 0.70 16 22 N -0.91 -55.38 13.70 21.44 0.29 -55.09 16 23 Si 1.06 49.26 26.48 68.60 1.82 51.08 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.24 -9.69 5.72 99.48 0.57 -9.12 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 0.87 8.09 -2.38 -0.02 0.85 16 29 H 0.06 0.95 6.67 -2.39 -0.02 0.94 16 30 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 31 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 32 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.43 10.93 7.01 -92.71 -0.65 10.28 16 34 H 0.07 2.33 8.11 -2.39 -0.02 2.31 16 35 H 0.08 3.10 5.94 -2.39 -0.01 3.09 16 36 H 0.06 2.59 7.15 -2.39 -0.02 2.58 16 37 H 0.07 2.84 4.53 -2.39 -0.01 2.83 16 38 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.05 2.27 7.49 -2.39 -0.02 2.26 16 40 H 0.26 15.83 8.73 -92.70 -0.81 15.02 16 Total: -1.00 -70.06 338.95 3.74 -66.31 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.26 Total: 17.79 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.26 Total: 10.76 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -3.44 Total: -101.46 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.08 Total: -42.58 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 1.82 Total: 51.08 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -70.06 3.74 -66.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299727703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.187 kcal (2) G-P(sol) polarization free energy of solvation -70.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds