Wall clock time and date at job start Tue Mar 31 2020 14:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47136 * 2 1 4 4 N 1.46494 * 109.46910 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99777 * 264.53405 * 4 3 2 6 6 H 1.07999 * 119.99854 * 146.01795 * 5 4 3 7 7 C 1.38955 * 120.00132 * 326.02250 * 5 4 3 8 8 N 1.31407 * 119.99616 * 337.80091 * 7 5 4 9 9 Si 1.86801 * 119.99705 * 157.80529 * 7 5 4 10 10 H 1.48498 * 109.46956 * 90.00206 * 9 7 5 11 11 H 1.48499 * 109.46705 * 209.99545 * 9 7 5 12 12 H 1.48492 * 109.47398 * 329.99685 * 9 7 5 13 13 C 1.34778 * 120.00272 * 84.54014 * 4 3 2 14 14 O 1.21291 * 119.99868 * 359.97438 * 13 4 3 15 15 C 1.50700 * 120.00042 * 179.97438 * 13 4 3 16 16 C 1.53003 * 109.46960 * 179.97438 * 15 13 4 17 17 C 1.50700 * 109.46960 * 180.02562 * 16 15 13 18 18 O 1.21228 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.47466 * 119.99998 * 179.97438 * 17 16 15 20 20 C 1.39598 * 119.72839 * 180.02562 * 19 17 16 21 21 C 1.38494 * 119.06085 * 179.97438 * 20 19 17 22 22 C 1.38781 * 118.48943 * 0.02562 * 21 20 19 23 23 Cl 1.73603 * 120.31756 * 179.97438 * 22 21 20 24 24 C 1.38836 * 119.36205 * 0.02562 * 22 21 20 25 25 N 1.31403 * 120.90412 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47245 * 300.00106 * 1 2 3 28 28 H 1.09001 * 109.47463 * 60.00187 * 1 2 3 29 29 H 1.09001 * 109.47205 * 239.99587 * 2 1 3 30 30 H 1.08996 * 109.46784 * 119.99977 * 2 1 3 31 31 H 1.08997 * 109.46690 * 59.99722 * 3 2 1 32 32 H 1.09001 * 109.46792 * 300.00224 * 3 2 1 33 33 H 0.97007 * 119.99320 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46640 * 59.99929 * 15 13 4 35 35 H 1.09002 * 109.47207 * 300.00064 * 15 13 4 36 36 H 1.09001 * 109.46769 * 60.00301 * 16 15 13 37 37 H 1.08994 * 109.47075 * 300.00311 * 16 15 13 38 38 H 1.08003 * 120.47108 * 0.25152 * 20 19 17 39 39 H 1.07995 * 120.75401 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.55000 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5554 1.1810 6 1 5.1326 1.0425 1.3099 7 6 3.6745 2.3295 2.2130 8 7 2.8036 3.2778 1.9503 9 14 4.2186 2.0222 3.9734 10 1 5.4090 2.8566 4.2764 11 1 3.1154 2.3782 4.9016 12 1 4.5636 0.5878 4.1416 13 6 4.1784 1.3316 -1.1628 14 8 3.5715 1.2313 -2.2082 15 6 5.6854 1.3321 -1.1634 16 6 6.1948 1.1943 -2.5996 17 6 7.7018 1.1942 -2.6001 18 8 8.3083 1.2939 -1.5552 19 6 8.4387 1.0715 -3.8716 20 6 9.8346 1.0715 -3.8655 21 6 10.5126 0.9551 -5.0675 22 6 9.7731 0.8430 -6.2365 23 17 10.5742 0.6952 -7.7695 24 6 8.3864 0.8513 -6.1682 25 7 7.7682 0.9640 -5.0142 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 2.4434 3.8185 2.6707 34 1 6.0492 0.4952 -0.5673 35 1 6.0486 2.2671 -0.7368 36 1 5.8309 2.0309 -3.1960 37 1 5.8316 0.2592 -3.0257 38 1 10.3783 1.1566 -2.9362 39 1 11.5922 0.9516 -5.0945 40 1 7.8079 0.7638 -7.0761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346469901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:59 Heat of formation + Delta-G solvation = -66.146800 kcal Electronic energy + Delta-G solvation = -24176.055368 eV Core-core repulsion = 20402.116842 eV Total energy + Delta-G solvation = -3773.938526 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.77065 -40.61896 -39.87942 -37.75586 -37.06318 -34.66104 -34.07434 -33.48138 -33.03328 -32.39173 -28.28370 -27.28212 -26.12977 -25.00378 -24.25821 -22.38711 -21.23582 -20.81531 -18.99897 -18.29211 -18.08941 -17.58309 -17.27334 -17.00615 -16.52889 -16.13028 -15.82129 -15.76992 -15.55878 -15.14061 -15.06540 -14.50259 -14.31073 -14.19269 -13.73234 -13.66748 -13.34479 -13.16520 -13.07240 -12.98618 -12.67056 -12.56718 -12.40343 -12.35489 -12.11950 -12.04603 -11.92347 -11.50989 -11.31782 -11.07181 -10.98014 -10.58283 -10.33259 -10.14922 -9.47707 -8.30880 -6.03116 -0.84446 0.00670 0.82260 1.03261 1.41530 1.48147 1.59769 2.03148 2.31709 2.51427 2.54008 2.99411 3.09042 3.32047 3.56109 3.69867 3.85216 3.89217 4.16468 4.20572 4.22677 4.33656 4.45176 4.53920 4.58950 4.67439 4.73231 4.83755 4.88375 4.97743 4.99999 5.10340 5.13272 5.22978 5.24287 5.37706 5.46715 5.58802 6.01556 6.13344 6.43725 6.63104 7.12496 7.60032 8.03514 8.71567 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.002548 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.028939 B =10987.442719 C =12167.895643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.115 3.885 4 N -0.451 5.451 5 C -0.357 4.357 6 H 0.096 0.904 7 C 0.003 3.997 8 N -0.889 5.889 9 Si 0.980 3.020 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.262 1.262 13 C 0.454 3.546 14 O -0.631 6.631 15 C -0.101 4.101 16 C -0.123 4.123 17 C 0.419 3.581 18 O -0.459 6.459 19 C 0.032 3.968 20 C -0.100 4.100 21 C -0.066 4.066 22 C -0.063 4.063 23 Cl -0.032 7.032 24 C 0.107 3.893 25 N -0.448 5.448 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.030 0.970 33 H 0.273 0.727 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.166 0.834 39 H 0.184 0.816 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.971 -5.406 -12.706 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.168 5.168 5 C -0.484 4.484 6 H 0.114 0.886 7 C -0.200 4.200 8 N -0.527 5.527 9 Si 0.803 3.197 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.186 1.186 13 C 0.244 3.756 14 O -0.520 6.520 15 C -0.141 4.141 16 C -0.161 4.161 17 C 0.296 3.704 18 O -0.332 6.332 19 C -0.102 4.102 20 C -0.120 4.120 21 C -0.092 4.092 22 C -0.092 4.092 23 Cl -0.003 7.003 24 C -0.055 4.055 25 N -0.159 5.159 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.184 0.816 39 H 0.202 0.798 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 13.019 -5.248 -12.568 18.841 hybrid contribution 0.838 0.225 0.623 1.069 sum 13.857 -5.023 -11.945 18.972 Atomic orbital electron populations 1.21607 0.93604 1.02358 1.01733 1.21724 0.97294 0.96843 1.00456 1.21426 0.81411 0.96350 1.01714 1.43783 1.05358 1.62165 1.05510 1.19743 1.07955 1.29843 0.90871 0.88600 1.26159 0.96904 0.92879 1.04039 1.70046 1.31231 1.16963 1.34414 0.85144 0.77986 0.79249 0.77295 1.19807 1.20367 1.18566 1.20989 0.90869 0.80573 0.83183 1.90484 1.71385 1.57712 1.32370 1.21086 0.91733 1.04034 0.97233 1.21481 0.91757 1.05773 0.97105 1.22445 0.91452 0.70053 0.86415 1.90533 1.72110 1.36524 1.34054 1.21700 0.92666 1.02362 0.93481 1.22485 0.93329 0.95469 1.00735 1.21897 1.02928 0.95182 0.89231 1.22551 0.94434 1.02844 0.89409 1.98416 1.79136 1.95691 1.27054 1.23313 0.90576 0.95027 0.96564 1.67799 1.40596 1.09392 0.98147 0.90862 0.92566 0.92913 0.94031 0.92693 0.88894 0.95145 0.91756 0.89539 0.90082 0.88175 0.87679 0.81638 0.79838 0.79024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.91 71.98 0.71 -3.79 16 2 C -0.12 -5.24 6.22 30.60 0.19 -5.05 16 3 C 0.11 5.72 4.90 86.38 0.42 6.15 16 4 N -0.45 -23.61 2.56 -635.54 -1.63 -25.24 16 5 C -0.36 -18.49 8.70 84.04 0.73 -17.75 16 6 H 0.10 4.77 6.97 -2.91 -0.02 4.75 16 7 C 0.00 0.17 4.92 84.93 0.42 0.59 16 8 N -0.89 -47.70 11.34 21.66 0.25 -47.46 16 9 Si 0.98 39.88 29.61 68.60 2.03 41.91 16 10 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 C 0.45 22.87 7.60 87.66 0.67 23.54 16 14 O -0.63 -33.94 15.65 -3.06 -0.05 -33.99 16 15 C -0.10 -4.25 3.65 29.85 0.11 -4.14 16 16 C -0.12 -4.38 4.47 29.85 0.13 -4.25 16 17 C 0.42 13.00 7.13 28.12 0.20 13.20 16 18 O -0.46 -15.74 15.95 -2.87 -0.05 -15.78 16 19 C 0.03 0.82 6.73 41.74 0.28 1.10 16 20 C -0.10 -1.88 9.63 22.66 0.22 -1.66 16 21 C -0.07 -0.90 9.97 22.46 0.22 -0.68 16 22 C -0.06 -0.93 6.36 22.54 0.14 -0.79 16 23 Cl -0.03 -0.38 28.99 -2.72 -0.08 -0.46 16 24 C 0.11 1.93 10.99 84.90 0.93 2.86 16 25 N -0.45 -11.06 9.79 -185.07 -1.81 -12.87 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.09 4.89 5.35 -2.39 -0.01 4.88 16 32 H 0.03 1.59 7.59 -2.39 -0.02 1.58 16 33 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 34 H 0.09 3.52 7.60 -2.39 -0.02 3.50 16 35 H 0.08 3.55 8.05 -2.39 -0.02 3.53 16 36 H 0.10 3.67 8.10 -2.39 -0.02 3.65 16 37 H 0.11 3.71 8.10 -2.39 -0.02 3.69 16 38 H 0.17 2.76 7.64 -2.91 -0.02 2.73 16 39 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -65.32 360.90 5.11 -60.21 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 1.06 Total: 24.36 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.38 Total: 9.32 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -3.19 Total: -85.57 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.09 Total: -49.77 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -65.32 5.11 -60.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346469901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.939 kcal (2) G-P(sol) polarization free energy of solvation -65.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds