Wall clock time and date at job start Tue Mar 31 2020 14:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47173 * 2 1 4 4 N 1.46499 * 109.47364 * 120.00226 * 2 1 3 5 5 C 1.46496 * 120.00059 * 299.99924 * 4 2 1 6 6 C 1.34776 * 120.00259 * 119.99735 * 4 2 1 7 7 O 1.21380 * 120.00070 * 3.61735 * 6 4 2 8 8 C 1.49266 * 120.00070 * 183.61172 * 6 4 2 9 9 O 1.21383 * 120.00073 * 354.18220 * 8 6 4 10 10 N 1.34774 * 119.99609 * 174.45952 * 8 6 4 11 11 C 1.38973 * 119.99608 * 183.97342 * 10 8 6 12 12 C 1.39556 * 119.84352 * 334.32905 * 11 10 8 13 13 C 1.36322 * 120.17366 * 179.72407 * 12 11 10 14 14 C 1.40940 * 119.85217 * 0.57182 * 13 12 11 15 15 C 1.41063 * 120.14863 * 179.72324 * 14 13 12 16 16 H 1.08007 * 119.99922 * 144.71406 * 15 14 13 17 17 C 1.39979 * 120.00531 * 324.70902 * 15 14 13 18 18 N 1.30821 * 119.99977 * 174.37017 * 17 15 14 19 19 Si 1.86796 * 119.99552 * 354.37053 * 17 15 14 20 20 H 1.48498 * 109.47154 * 88.83607 * 19 17 15 21 21 H 1.48501 * 109.47343 * 208.83379 * 19 17 15 22 22 H 1.48505 * 109.47459 * 328.83658 * 19 17 15 23 23 C 1.40884 * 119.69743 * 359.70203 * 14 13 12 24 24 C 1.36435 * 119.82111 * 359.97438 * 23 14 13 25 25 Cl 1.73597 * 119.92862 * 179.97438 * 24 23 14 26 26 H 1.09002 * 109.47331 * 299.99634 * 1 2 3 27 27 H 1.09001 * 109.47429 * 60.00077 * 1 2 3 28 28 H 1.08999 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46824 * 240.00248 * 2 1 3 30 30 H 1.09001 * 109.47079 * 59.99598 * 3 2 1 31 31 H 1.08999 * 109.47412 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46880 * 300.00259 * 3 2 1 33 33 H 1.09000 * 109.47168 * 264.07624 * 5 4 2 34 34 H 1.09005 * 109.46632 * 24.07078 * 5 4 2 35 35 H 1.08997 * 109.47248 * 144.07084 * 5 4 2 36 36 H 0.96996 * 120.00257 * 3.96704 * 10 8 6 37 37 H 1.08005 * 119.91208 * 359.97438 * 12 11 10 38 38 H 1.07998 * 120.07301 * 180.24809 * 13 12 11 39 39 H 0.97004 * 119.99845 * 180.02562 * 18 17 15 40 40 H 1.07993 * 120.08845 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7932 -1.7865 1.0724 7 8 3.1406 -2.1630 -0.0279 8 6 3.2241 -2.5369 2.2886 9 8 2.9667 -2.1029 3.3926 10 7 3.9040 -3.6936 2.1609 11 6 4.2332 -4.4343 3.2898 12 6 4.3641 -3.7972 4.5246 13 6 4.6813 -4.5181 5.6373 14 6 4.8891 -5.9085 5.5368 15 6 5.2233 -6.6596 6.6831 16 1 4.8518 -7.6675 6.7955 17 6 6.0366 -6.0988 7.6748 18 7 6.2566 -6.7518 8.7869 19 14 6.8076 -4.4181 7.4103 20 1 5.8776 -3.3654 7.8922 21 1 8.0837 -4.3344 8.1652 22 1 7.0745 -4.2180 5.9632 23 6 4.7612 -6.5447 4.2863 24 6 4.4367 -5.8119 3.1822 25 17 4.2790 -6.5929 1.6399 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 2.4670 0.4454 2.9011 34 1 0.7424 0.3878 2.4641 35 1 1.5208 -1.0313 3.2049 36 1 4.1635 -4.0091 1.2812 37 1 4.2097 -2.7309 4.5995 38 1 4.7782 -4.0241 6.5927 39 1 6.8198 -6.3630 9.4743 40 1 4.9186 -7.6098 4.2021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453696666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:22 Heat of formation + Delta-G solvation = -55.233334 kcal Electronic energy + Delta-G solvation = -24989.287958 eV Core-core repulsion = 21215.822675 eV Total energy + Delta-G solvation = -3773.465283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25857 -40.61796 -39.25707 -37.88652 -37.46843 -36.30180 -35.02992 -33.22497 -31.71667 -31.63365 -28.20091 -28.10462 -27.52755 -25.52062 -23.89869 -23.10045 -21.71007 -20.62163 -19.62254 -19.27288 -18.45085 -18.02357 -17.36783 -17.20707 -16.54704 -16.22486 -15.99588 -15.49067 -15.39761 -14.97017 -14.75841 -14.61887 -14.42982 -14.34165 -14.12658 -13.84645 -13.60271 -13.34544 -13.15320 -12.93694 -12.89883 -12.66612 -12.47685 -12.27696 -12.24155 -12.09806 -11.79977 -11.75626 -11.70185 -11.46983 -10.92656 -10.29549 -9.87807 -9.62732 -9.07718 -8.88885 -6.54865 -0.01029 0.56627 0.67297 1.12488 1.23194 1.28096 1.40079 1.48053 2.01306 2.09698 2.40331 2.52096 3.16361 3.29513 3.85851 4.06716 4.08862 4.20766 4.29709 4.32926 4.53927 4.64943 4.68315 4.70244 4.74404 4.84328 4.89267 4.95228 5.00812 5.10541 5.25737 5.26891 5.31441 5.32632 5.39424 5.57073 5.78075 5.88132 5.95725 6.19061 6.23739 6.50951 6.62368 6.70368 6.87061 8.16516 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.003574 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.259622 B = 7833.073587 C = 9027.087325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 C -0.154 4.154 4 N -0.572 5.572 5 C 0.060 3.940 6 C 0.510 3.490 7 O -0.547 6.547 8 C 0.493 3.507 9 O -0.513 6.513 10 N -0.614 5.614 11 C 0.020 3.980 12 C -0.072 4.072 13 C -0.225 4.225 14 C 0.081 3.919 15 C -0.466 4.466 16 H 0.066 0.934 17 C 0.048 3.952 18 N -0.847 5.847 19 Si 0.961 3.039 20 H -0.255 1.255 21 H -0.279 1.279 22 H -0.249 1.249 23 C -0.186 4.186 24 C -0.007 4.007 25 Cl -0.074 7.074 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.419 0.581 37 H 0.150 0.850 38 H 0.112 0.888 39 H 0.296 0.704 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 15.577 -14.480 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.017 3.983 3 C -0.212 4.212 4 N -0.305 5.305 5 C -0.081 4.081 6 C 0.292 3.708 7 O -0.426 6.426 8 C 0.277 3.723 9 O -0.390 6.390 10 N -0.259 5.259 11 C -0.075 4.075 12 C -0.092 4.092 13 C -0.245 4.245 14 C 0.077 3.923 15 C -0.496 4.496 16 H 0.084 0.916 17 C -0.167 4.167 18 N -0.474 5.474 19 Si 0.785 3.215 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.173 1.173 23 C -0.206 4.206 24 C -0.035 4.035 25 Cl -0.045 7.045 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.258 0.742 37 H 0.167 0.833 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.163 15.577 -14.194 22.600 hybrid contribution 0.593 -0.350 -0.062 0.691 sum -7.570 15.227 -14.257 22.191 Atomic orbital electron populations 1.22135 0.92574 1.02438 1.04277 1.21477 0.95827 0.94043 0.86903 1.22101 1.01029 0.93892 1.04184 1.47973 1.47245 1.25266 1.10003 1.22463 1.01943 1.01962 0.81727 1.19836 0.80447 0.82231 0.88240 1.90735 1.56207 1.68128 1.27482 1.20334 0.79561 0.82390 0.90038 1.90586 1.54147 1.67026 1.27289 1.42637 1.52217 1.21374 1.09680 1.16998 1.14248 0.88498 0.87763 1.20983 0.97072 1.00881 0.90281 1.20982 1.10252 0.94899 0.98362 1.17796 0.90043 0.92172 0.92249 1.19415 1.27573 1.01526 1.01072 0.91606 1.26768 0.95049 1.02080 0.92809 1.69633 1.31417 1.40293 1.06013 0.85585 0.77633 0.77846 0.80421 1.18054 1.20620 1.17297 1.20720 1.09648 0.99917 0.90327 1.20249 1.05825 0.90529 0.86901 1.98299 1.96541 1.80665 1.29012 0.90751 0.88997 0.93372 0.89436 0.90919 0.93467 0.89091 0.91750 0.88476 0.89084 0.74239 0.83268 0.87080 0.89350 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.18 71.98 0.66 -1.17 16 2 C 0.12 1.94 3.24 44.99 0.15 2.09 16 3 C -0.15 -1.83 9.19 71.98 0.66 -1.17 16 4 N -0.57 -12.30 2.76 -824.40 -2.28 -14.58 16 5 C 0.06 1.11 8.58 127.77 1.10 2.20 16 6 C 0.51 14.35 7.73 87.21 0.67 15.02 16 7 O -0.55 -17.21 15.82 -3.34 -0.05 -17.27 16 8 C 0.49 15.69 7.65 87.21 0.67 16.36 16 9 O -0.51 -17.18 10.00 -3.35 -0.03 -17.21 16 10 N -0.61 -20.75 5.14 -304.45 -1.57 -22.31 16 11 C 0.02 0.78 6.46 38.67 0.25 1.03 16 12 C -0.07 -3.03 8.71 22.14 0.19 -2.83 16 13 C -0.23 -10.29 6.84 22.48 0.15 -10.14 16 14 C 0.08 3.93 5.11 -21.28 -0.11 3.82 16 15 C -0.47 -24.87 9.60 23.39 0.22 -24.65 16 16 H 0.07 3.76 8.06 -2.91 -0.02 3.74 16 17 C 0.05 2.46 5.50 85.27 0.47 2.93 16 18 N -0.85 -44.90 13.93 21.83 0.30 -44.60 16 19 Si 0.96 41.18 24.38 68.60 1.67 42.86 16 20 H -0.26 -10.34 6.64 99.48 0.66 -9.68 16 21 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 22 H -0.25 -10.86 6.58 99.48 0.65 -10.21 16 23 C -0.19 -8.20 9.50 22.50 0.21 -7.99 16 24 C -0.01 -0.26 6.30 22.19 0.14 -0.12 16 25 Cl -0.07 -2.43 27.75 -2.72 -0.08 -2.51 16 26 H 0.07 0.70 6.67 -2.39 -0.02 0.69 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 1.73 6.90 -2.39 -0.02 1.72 16 30 H 0.07 0.71 7.67 -2.39 -0.02 0.70 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.18 6.44 -2.38 -0.02 1.16 16 35 H 0.09 2.12 5.34 -2.54 -0.01 2.11 16 36 H 0.42 13.16 7.21 -92.71 -0.67 12.49 16 37 H 0.15 5.93 5.48 -2.91 -0.02 5.91 16 38 H 0.11 5.02 4.39 -2.91 -0.01 5.01 16 39 H 0.30 14.11 8.30 -92.71 -0.77 13.35 16 40 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -58.50 338.96 3.75 -54.75 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.33 Total: 25.48 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.44 Total: -4.62 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.54 Total: -81.48 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.09 Total: -34.48 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.67 Total: 42.86 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.08 Total: -2.51 kcal Total: -58.50 3.75 -54.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453696666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.483 kcal (2) G-P(sol) polarization free energy of solvation -58.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds