Wall clock time and date at job start Tue Mar 31 2020 13:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38165 * 119.95262 * 2 1 4 4 C 1.38838 * 119.93822 * 180.02562 * 3 2 1 5 5 N 1.39747 * 120.07744 * 179.97438 * 4 3 2 6 6 C 1.46851 * 110.99928 * 64.23487 * 5 4 3 7 7 C 1.53032 * 109.52514 * 174.16118 * 6 5 4 8 8 C 1.53116 * 109.28098 * 59.17800 * 7 6 5 9 9 C 1.50701 * 109.52489 * 182.44055 * 8 7 6 10 10 H 1.07999 * 119.99901 * 119.68516 * 9 8 7 11 11 C 1.37871 * 120.00098 * 299.68584 * 9 8 7 12 12 N 1.31512 * 120.00421 * 180.02562 * 11 9 8 13 13 Si 1.86809 * 120.00094 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46844 * 90.00124 * 13 11 9 15 15 H 1.48501 * 109.47061 * 210.00166 * 13 11 9 16 16 H 1.48493 * 109.46894 * 330.00115 * 13 11 9 17 17 C 1.53120 * 109.16146 * 302.35015 * 8 7 6 18 18 C 1.46843 * 111.00389 * 300.02677 * 5 4 3 19 19 C 1.39028 * 119.84707 * 0.02562 * 4 3 2 20 20 Cl 1.73599 * 120.05100 * 180.02562 * 19 4 3 21 21 C 1.38174 * 119.90317 * 0.27292 * 19 4 3 22 22 C 1.38244 * 119.95782 * 180.02562 * 2 1 3 23 23 N 1.48013 * 119.91730 * 359.97438 * 22 2 1 24 24 O 1.21800 * 119.99619 * 186.14138 * 23 22 2 25 25 O 1.21794 * 120.00169 * 6.14753 * 23 22 2 26 26 H 1.09001 * 109.47355 * 96.92320 * 1 2 3 27 27 H 1.08998 * 109.46740 * 216.92160 * 1 2 3 28 28 H 1.09003 * 109.47012 * 336.91809 * 1 2 3 29 29 H 1.08001 * 120.02840 * 0.04467 * 3 2 1 30 30 H 1.09005 * 109.46382 * 294.17837 * 6 5 4 31 31 H 1.08996 * 109.45981 * 54.14251 * 6 5 4 32 32 H 1.09007 * 109.50362 * 299.23484 * 7 6 5 33 33 H 1.09005 * 109.50384 * 179.12035 * 7 6 5 34 34 H 1.09003 * 109.52156 * 62.25208 * 8 7 6 35 35 H 0.96998 * 120.00654 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.50145 * 297.70656 * 17 8 7 37 37 H 1.08997 * 109.50274 * 177.59664 * 17 8 7 38 38 H 1.08998 * 109.46193 * 305.85474 * 18 5 4 39 39 H 1.09003 * 109.46167 * 65.81913 * 18 5 4 40 40 H 1.07998 * 119.96502 * 179.70045 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1971 0.0000 4 6 3.5852 1.1968 -0.0005 5 7 4.2859 2.4059 -0.0011 6 6 4.0346 3.1603 1.2335 7 6 4.9262 4.4036 1.2636 8 6 4.6221 5.2737 0.0410 9 6 5.5389 6.4697 0.0332 10 1 6.2137 6.6274 -0.7951 11 6 5.5162 7.3625 1.0835 12 7 6.3159 8.4065 1.0766 13 14 4.3485 7.0901 2.5160 14 1 5.0215 6.2685 3.5538 15 1 3.9624 8.4014 3.0962 16 1 3.1334 6.3839 2.0366 17 6 4.8451 4.4497 -1.2302 18 6 3.9558 3.2050 -1.1880 19 6 4.2768 -0.0093 -0.0016 20 17 6.0128 -0.0159 -0.0016 21 6 3.5804 -1.2027 -0.0079 22 6 2.1973 -1.1977 -0.0005 23 7 1.4545 -2.4780 -0.0005 24 8 2.0560 -3.5310 0.1118 25 8 0.2417 -2.4784 -0.1130 26 1 -0.3634 -0.1239 -1.0202 27 1 -0.3633 -0.8216 0.6173 28 1 -0.3633 0.9454 0.4029 29 1 1.6565 2.1323 0.0007 30 1 2.9880 3.4630 1.2675 31 1 4.2588 2.5316 2.0952 32 1 5.9733 4.1011 1.2437 33 1 4.7282 4.9716 2.1727 34 1 3.5855 5.6084 0.0809 35 1 6.2997 9.0349 1.8153 36 1 5.8908 4.1479 -1.2895 37 1 4.5891 5.0505 -2.1029 38 1 4.1227 2.6088 -2.0851 39 1 2.9096 3.5075 -1.1427 40 1 4.1167 -2.1401 -0.0136 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781679208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:54 Heat of formation + Delta-G solvation = 10.512048 kcal Electronic energy + Delta-G solvation = -25348.036466 eV Core-core repulsion = 21577.422117 eV Total energy + Delta-G solvation = -3770.614349 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.41362 -41.61091 -39.46223 -37.89026 -37.58770 -36.10245 -34.07824 -33.66492 -31.86129 -31.61454 -28.82702 -28.05046 -26.36475 -24.42797 -24.13526 -23.41093 -22.46452 -20.63665 -20.12584 -19.77583 -18.83184 -18.74674 -18.27880 -17.31152 -16.62701 -16.21651 -16.16672 -15.36039 -15.16633 -15.09137 -14.95827 -14.75862 -14.34936 -14.18962 -13.94791 -13.78788 -13.53971 -13.30681 -13.05965 -12.75527 -12.57697 -12.53721 -12.30163 -12.22218 -12.15609 -12.01222 -11.76935 -11.71397 -11.45258 -11.01306 -10.91420 -10.67702 -10.51768 -10.00125 -9.66024 -8.27711 -6.31447 -1.37628 -0.38079 0.08819 0.18571 0.99816 1.31147 1.35671 1.46392 1.88405 2.33451 2.43475 3.07939 3.15813 3.31783 3.50146 3.65035 3.88992 4.05048 4.12809 4.16080 4.24641 4.26530 4.30368 4.49597 4.54688 4.61730 4.64150 4.71878 4.82490 4.87404 4.92931 4.94442 4.99533 5.08587 5.22478 5.39687 5.52151 5.67518 5.75630 5.83811 6.08141 6.34334 6.47677 6.76740 7.33967 8.89554 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.003497 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.172355 B = 8004.007744 C = 8692.272259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 C -0.138 4.138 4 C 0.165 3.835 5 N -0.511 5.511 6 C 0.069 3.931 7 C -0.113 4.113 8 C 0.013 3.987 9 C -0.515 4.515 10 H 0.029 0.971 11 C 0.007 3.993 12 N -0.955 5.955 13 Si 0.949 3.051 14 H -0.268 1.268 15 H -0.304 1.304 16 H -0.237 1.237 17 C -0.091 4.091 18 C 0.069 3.931 19 C -0.034 4.034 20 Cl -0.029 7.029 21 C -0.036 4.036 22 C -0.058 4.058 23 N 0.036 4.964 24 O -0.196 6.196 25 O -0.147 6.147 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.172 0.828 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 -19.873 -1.487 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.006 3.994 3 C -0.159 4.159 4 C 0.069 3.931 5 N -0.233 5.233 6 C -0.057 4.057 7 C -0.151 4.151 8 C -0.006 4.006 9 C -0.553 4.553 10 H 0.048 0.952 11 C -0.189 4.189 12 N -0.595 5.595 13 Si 0.776 3.224 14 H -0.194 1.194 15 H -0.232 1.232 16 H -0.160 1.160 17 C -0.129 4.129 18 C -0.056 4.056 19 C -0.063 4.063 20 Cl 0.001 6.999 21 C -0.056 4.056 22 C -0.142 4.142 23 N 0.551 4.449 24 O -0.403 6.403 25 O -0.366 6.366 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.190 0.810 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.921 -19.242 -1.424 22.171 hybrid contribution -0.362 0.403 0.690 0.877 sum -11.282 -18.839 -0.734 21.971 Atomic orbital electron populations 1.21428 0.86548 1.05702 1.05341 1.20045 0.99312 0.89313 0.90754 1.21857 0.93145 0.98845 1.02045 1.19134 0.90718 0.91123 0.92117 1.59603 1.56367 1.03020 1.04315 1.22188 0.98741 0.94331 0.90409 1.21877 0.99851 0.94766 0.98625 1.19160 0.95772 0.92523 0.93106 1.21400 1.21068 1.07571 1.05291 0.95220 1.25948 0.97100 0.94531 1.01364 1.70065 1.40848 1.14971 1.33660 0.85840 0.80807 0.76348 0.79408 1.19400 1.23218 1.16029 1.21379 0.99273 0.94330 0.97885 1.22230 0.98494 0.93812 0.91043 1.20642 0.87143 0.92250 1.06281 1.98423 1.06250 1.98720 1.96544 1.20787 0.91075 0.99529 0.94196 1.20812 0.91867 0.83282 1.18274 1.43587 1.01099 1.02841 0.97393 1.94561 1.70348 1.20269 1.55072 1.94456 0.96269 1.93800 1.52038 0.88050 0.88759 0.88503 0.81032 0.92694 0.89994 0.92572 0.93873 0.95349 0.92754 0.93155 0.91812 0.89499 0.92450 0.81081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.68 71.24 0.62 -0.97 16 2 C 0.01 0.13 5.88 -19.88 -0.12 0.01 16 3 C -0.14 -2.25 8.32 22.40 0.19 -2.06 16 4 C 0.16 3.40 4.68 38.21 0.18 3.58 16 5 N -0.51 -12.83 4.02 -695.29 -2.80 -15.63 16 6 C 0.07 1.87 5.17 86.32 0.45 2.31 16 7 C -0.11 -4.21 4.84 30.64 0.15 -4.06 16 8 C 0.01 0.55 1.75 -11.46 -0.02 0.53 16 9 C -0.52 -27.98 9.14 25.60 0.23 -27.75 16 10 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 11 C 0.01 0.39 5.45 84.65 0.46 0.85 16 12 N -0.95 -58.85 13.96 21.44 0.30 -58.55 16 13 Si 0.95 42.47 24.37 68.60 1.67 44.14 16 14 H -0.27 -11.46 6.89 99.48 0.69 -10.77 16 15 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.24 -9.32 6.53 99.48 0.65 -8.67 16 17 C -0.09 -3.11 5.32 30.65 0.16 -2.95 16 18 C 0.07 1.74 5.11 86.32 0.44 2.18 16 19 C -0.03 -0.71 6.34 22.44 0.14 -0.56 16 20 Cl -0.03 -0.65 28.44 -2.72 -0.08 -0.73 16 21 C -0.04 -0.67 9.33 22.27 0.21 -0.46 16 22 C -0.06 -1.12 6.83 36.40 0.25 -0.87 16 23 N 0.04 0.81 4.45 -46.42 -0.21 0.60 16 24 O -0.20 -4.82 18.46 18.89 0.35 -4.47 16 25 O -0.15 -3.19 15.34 18.89 0.29 -2.90 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.29 5.85 -2.39 -0.01 1.27 16 28 H 0.10 0.78 8.04 -2.39 -0.02 0.76 16 29 H 0.17 2.20 7.13 -2.91 -0.02 2.18 16 30 H 0.05 1.31 7.56 -2.38 -0.02 1.30 16 31 H 0.08 2.04 8.11 -2.39 -0.02 2.02 16 32 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.04 1.69 3.38 -2.38 -0.01 1.68 16 34 H 0.03 1.16 7.19 -2.39 -0.02 1.14 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 1.92 8.11 -2.39 -0.02 1.90 16 39 H 0.06 1.23 7.33 -2.39 -0.02 1.22 16 40 H 0.17 2.85 7.62 -2.91 -0.02 2.83 16 Total: -1.00 -64.35 335.58 3.86 -60.48 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.99 Total: 7.27 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.34 Total: -30.22 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -2.70 Total: -73.57 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.64 Total: -7.37 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.67 Total: 44.14 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -64.35 3.86 -60.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781679208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.996 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds