Wall clock time and date at job start Tue Mar 31 2020 13:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37948 * 120.06717 * 2 1 4 4 C 1.38379 * 120.17935 * 180.27943 * 3 2 1 5 5 C 1.38307 * 120.31949 * 359.76856 * 4 3 2 6 6 C 1.38117 * 120.12995 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 120.09071 * 179.97438 * 6 5 4 8 8 C 1.39583 * 120.06973 * 179.79790 * 2 1 3 9 9 C 1.47777 * 120.15246 * 359.96986 * 8 2 1 10 10 O 1.21557 * 119.99910 * 269.72461 * 9 8 2 11 11 N 1.34774 * 119.99730 * 89.72815 * 9 8 2 12 12 C 1.46496 * 119.99681 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.92089 * 31.10246 * 12 11 9 14 14 C 1.54915 * 111.00547 * 267.19663 * 12 11 9 15 15 N 1.47425 * 104.83334 * 204.91767 * 14 12 11 16 16 C 1.36938 * 125.64998 * 204.16451 * 15 14 12 17 17 H 1.07994 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00073 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99990 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47265 * 59.99929 * 20 18 16 22 22 H 1.48507 * 109.47363 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47157 * 300.00028 * 20 18 16 24 24 C 1.47022 * 108.70334 * 24.12789 * 15 14 12 25 25 C 1.54327 * 107.27336 * 358.94217 * 24 15 14 26 26 H 1.08993 * 110.72079 * 96.16743 * 25 24 15 27 27 O 1.42893 * 110.72400 * 219.44644 * 25 24 15 28 28 H 1.09007 * 109.46668 * 270.20383 * 1 2 3 29 29 H 1.09002 * 109.47220 * 30.20453 * 1 2 3 30 30 H 1.08995 * 109.47399 * 150.20782 * 1 2 3 31 31 H 1.07996 * 119.90583 * 0.02903 * 3 2 1 32 32 H 1.08005 * 119.83690 * 179.74919 * 4 3 2 33 33 H 1.07994 * 119.93879 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00096 * 0.02562 * 11 9 8 35 35 H 1.08997 * 110.36462 * 86.07761 * 14 12 11 36 36 H 1.08997 * 110.36247 * 323.75428 * 14 12 11 37 37 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.88723 * 239.52626 * 24 15 14 39 39 H 1.09000 * 110.01436 * 118.43179 * 24 15 14 40 40 H 0.96707 * 113.99718 * 298.54499 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1939 0.0000 4 6 3.5819 1.1966 -0.0058 5 6 4.2825 0.0040 -0.0069 6 6 3.6037 -1.1988 -0.0016 7 17 4.4840 -2.6950 -0.0036 8 6 2.2064 -1.2080 0.0043 9 6 1.4725 -2.4906 0.0095 10 8 1.1755 -3.0166 1.0643 11 7 1.1325 -3.0771 -1.1554 12 6 0.4054 -4.3489 -1.1502 13 1 -0.2402 -4.4246 -0.2752 14 6 1.3835 -5.5480 -1.2240 15 7 0.5930 -6.6441 -1.8131 16 6 0.8432 -7.9815 -1.6578 17 1 1.6819 -8.3082 -1.0610 18 6 0.0190 -8.9172 -2.2675 19 7 -1.0035 -8.5191 -2.9945 20 14 0.3599 -10.7414 -2.0551 21 1 0.2961 -11.0924 -0.6135 22 1 -0.6577 -11.5253 -2.8004 23 1 1.7120 -11.0570 -2.5820 24 6 -0.5091 -6.0637 -2.5941 25 6 -0.4083 -4.5297 -2.4590 26 1 0.1259 -4.1021 -3.3073 27 8 -1.7067 -3.9469 -2.3314 28 1 -0.3633 0.0037 1.0278 29 1 -0.3634 0.8881 -0.5170 30 1 -0.3634 -0.8918 -0.5106 31 1 1.6577 2.1289 0.0005 32 1 4.1174 2.1345 -0.0099 33 1 5.3624 0.0133 -0.0119 34 1 1.3699 -2.6575 -1.9971 35 1 1.7252 -5.8207 -0.2256 36 1 2.2323 -5.3062 -1.8636 37 1 -1.5793 -9.1730 -3.4209 38 1 -1.4649 -6.4085 -2.1997 39 1 -0.4154 -6.3504 -3.6416 40 1 -2.2827 -4.0991 -3.0932 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077620349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:03 Heat of formation + Delta-G solvation = -38.188871 kcal Electronic energy + Delta-G solvation = -25267.509249 eV Core-core repulsion = 21494.783070 eV Total energy + Delta-G solvation = -3772.726179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44619 -38.88410 -37.64442 -36.67835 -35.06628 -34.04639 -33.08652 -31.84254 -31.10468 -28.40502 -27.47943 -26.95550 -24.67570 -23.62197 -22.06637 -20.75099 -20.47267 -20.14264 -17.97586 -17.04806 -16.74717 -16.36125 -16.27354 -15.83914 -15.14027 -14.68083 -14.21303 -14.09653 -13.99561 -13.84257 -13.65018 -13.17888 -12.99065 -12.77266 -12.69594 -12.44520 -12.07752 -11.91238 -11.75645 -11.50126 -11.46167 -11.24516 -11.07568 -10.90685 -10.78965 -10.20343 -9.95787 -9.88377 -9.82411 -9.34617 -9.14347 -8.95740 -8.85516 -8.62685 -6.91182 -5.75982 -3.10294 0.70681 0.86316 1.90214 2.65592 3.10875 3.32714 3.40852 3.44663 3.46150 4.39187 4.42566 4.49687 4.61206 4.63341 4.87788 4.94037 5.08982 5.19305 5.38076 5.41555 5.43963 5.44486 5.59317 5.65653 5.79421 5.81350 5.87961 5.94064 6.06308 6.11542 6.12239 6.40750 6.49881 6.62423 6.87572 7.31753 7.45564 7.61796 7.73274 8.10267 8.17307 8.30806 9.15530 9.75515 10.38537 11.35840 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.003459 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.953061 B = 8091.849232 C = 9124.902031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.038 4.038 3 C -0.120 4.120 4 C -0.091 4.091 5 C -0.120 4.120 6 C -0.004 4.004 7 Cl -0.049 7.049 8 C -0.115 4.115 9 C 0.566 3.434 10 O -0.521 6.521 11 N -0.703 5.703 12 C 0.138 3.862 13 H 0.107 0.893 14 C 0.131 3.869 15 N -0.599 5.599 16 C -0.229 4.229 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.915 3.085 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.154 3.846 25 C 0.069 3.931 26 H 0.058 0.942 27 O -0.564 6.564 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.398 0.602 35 H 0.050 0.950 36 H 0.025 0.975 37 H 0.254 0.746 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 22.128 1.335 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.038 4.038 3 C -0.139 4.139 4 C -0.110 4.110 5 C -0.139 4.139 6 C -0.031 4.031 7 Cl -0.020 7.020 8 C -0.119 4.119 9 C 0.350 3.650 10 O -0.396 6.396 11 N -0.353 5.353 12 C 0.033 3.967 13 H 0.124 0.876 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.357 4.357 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.572 5.572 20 Si 0.745 3.255 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.028 3.972 25 C 0.009 3.991 26 H 0.075 0.925 27 O -0.369 6.369 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.232 0.768 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.616 21.559 2.601 22.701 hybrid contribution 0.253 -1.088 -0.924 1.450 sum 6.869 20.471 1.677 21.658 Atomic orbital electron populations 1.20934 0.89805 1.03802 1.03521 1.19938 0.96637 0.91022 0.96247 1.21083 0.94252 0.97560 1.00962 1.21227 0.94149 0.97736 0.97850 1.21003 1.00694 0.90371 1.01823 1.20974 0.90922 0.88583 1.02651 1.98430 1.75300 1.31727 1.96523 1.19813 0.92016 0.94501 1.05610 1.17969 0.78898 0.83625 0.84532 1.90835 1.53712 1.64230 1.30861 1.45907 1.57700 1.23800 1.07915 1.22315 0.93226 0.82038 0.99126 0.87553 1.21836 0.93054 0.87188 0.97556 1.44227 1.30082 1.00981 1.57425 1.19046 1.10199 0.79809 1.26611 0.90204 1.24802 0.97483 0.98272 0.99751 1.69906 1.18075 1.32426 1.36810 0.86147 0.77212 0.84439 0.77659 1.21033 1.21552 1.21111 1.21833 0.93409 0.85033 0.96934 1.23458 0.83379 0.96755 0.95551 0.92451 1.86449 1.25444 1.78268 1.46700 0.90100 0.90585 0.90581 0.84818 0.84722 0.84426 0.76769 0.93171 0.95755 0.93613 0.92104 0.93291 0.77594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.62 36.01 0.35 -0.89 16 2 C -0.04 -0.41 5.91 -104.23 -0.62 -1.02 16 3 C -0.12 -0.98 9.69 -39.64 -0.38 -1.37 16 4 C -0.09 -0.69 10.04 -39.50 -0.40 -1.08 16 5 C -0.12 -1.11 9.82 -39.60 -0.39 -1.49 16 6 C 0.00 -0.05 6.35 -39.07 -0.25 -0.30 16 7 Cl -0.05 -0.66 28.04 -51.86 -1.45 -2.12 16 8 C -0.12 -1.53 5.63 -104.94 -0.59 -2.12 16 9 C 0.57 9.26 4.77 -12.36 -0.06 9.20 16 10 O -0.52 -10.65 16.75 5.32 0.09 -10.56 16 11 N -0.70 -10.95 5.19 -52.69 -0.27 -11.22 16 12 C 0.14 2.63 3.15 -65.78 -0.21 2.42 16 13 H 0.11 2.32 7.54 -51.93 -0.39 1.93 16 14 C 0.13 2.86 6.93 -2.53 -0.02 2.84 16 15 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 16 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -26.77 10.31 55.49 0.57 -26.20 16 20 Si 0.92 22.22 29.55 -169.99 -5.02 17.19 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.15 3.63 5.14 -3.06 -0.02 3.61 16 25 C 0.07 1.26 3.98 -24.89 -0.10 1.16 16 26 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 27 O -0.56 -9.54 13.39 -35.23 -0.47 -10.01 16 28 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.08 0.90 7.08 -51.93 -0.37 0.53 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.40 5.17 8.55 -40.82 -0.35 4.82 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.06 1.62 7.29 -51.93 -0.38 1.24 16 39 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 40 H 0.38 4.89 9.11 45.56 0.42 5.31 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -33.73 352.66 -9.13 -42.86 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.38 Total: 6.69 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.93 Total: 4.07 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.28 Total: -53.44 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.38 Total: -20.57 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.45 Total: -2.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.73 -9.13 -42.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077620349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.670 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds