Wall clock time and date at job start Tue Mar 31 2020 13:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 120.00122 * 2 1 4 4 H 1.48503 * 109.46954 * 269.99934 * 3 2 1 5 5 H 1.48510 * 109.46845 * 29.99742 * 3 2 1 6 6 H 1.48493 * 109.47220 * 149.99615 * 3 2 1 7 7 C 1.38807 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99869 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.88966 * 336.34061 * 10 9 7 12 12 C 1.54146 * 113.80663 * 107.70253 * 10 9 7 13 13 C 1.53954 * 87.22707 * 139.16026 * 12 10 9 14 14 H 1.09002 * 113.66501 * 220.82623 * 13 12 10 15 15 N 1.46505 * 113.65721 * 89.86472 * 13 12 10 16 16 C 1.34776 * 119.99539 * 106.01578 * 15 13 12 17 17 O 1.21628 * 120.00350 * 359.97438 * 16 15 13 18 18 C 1.47213 * 119.99609 * 179.97438 * 16 15 13 19 19 C 1.47083 * 127.20421 * 359.70252 * 18 16 15 20 20 C 1.34125 * 105.97475 * 179.89137 * 19 18 16 21 21 O 1.34293 * 109.17365 * 0.37940 * 20 19 18 22 22 C 1.33683 * 110.91701 * 359.74698 * 21 20 19 23 23 Cl 1.73595 * 125.82878 * 180.02562 * 22 21 20 24 24 C 1.52906 * 86.88484 * 335.34695 * 13 12 10 25 25 C 1.52907 * 121.13720 * 259.13292 * 24 13 12 26 26 C 1.53956 * 86.78503 * 209.38073 * 25 24 13 27 27 C 1.52908 * 121.14082 * 150.57014 * 24 13 12 28 28 H 0.97006 * 119.99583 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00497 * 359.97438 * 9 7 2 30 30 H 1.08999 * 113.57544 * 24.59409 * 12 10 9 31 31 H 1.08992 * 113.63953 * 253.74605 * 12 10 9 32 32 H 0.97000 * 119.99713 * 286.00922 * 15 13 12 33 33 H 1.08001 * 127.01665 * 0.02562 * 19 18 16 34 34 H 1.07996 * 125.41578 * 180.10502 * 20 19 18 35 35 H 1.09005 * 113.66022 * 323.85208 * 25 24 13 36 36 H 1.09001 * 113.66746 * 94.90349 * 25 24 13 37 37 H 1.08994 * 113.57689 * 270.12977 * 26 25 24 38 38 H 1.08999 * 113.58120 * 139.33734 * 26 25 24 39 39 H 1.08994 * 113.66294 * 265.09463 * 27 24 13 40 40 H 1.08999 * 113.66066 * 36.14351 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0666 -3.5640 -0.4024 12 6 1.9978 -4.4100 1.3441 13 6 1.8269 -5.7030 0.5260 14 1 1.0967 -6.3940 0.9473 15 7 3.0941 -6.3529 0.1822 16 6 3.4685 -7.4794 0.8205 17 8 2.7547 -7.9561 1.6822 18 6 4.7415 -8.1328 0.4746 19 6 5.7168 -7.7004 -0.5380 20 6 6.7136 -8.5969 -0.4968 21 8 6.4325 -9.5268 0.4304 22 6 5.2618 -9.2713 1.0230 23 17 4.5278 -10.2229 2.2757 24 6 1.2656 -4.8229 -0.5913 25 6 -0.2406 -4.7143 -0.8312 26 6 0.1009 -4.4607 -2.3108 27 6 1.4181 -5.2174 -2.0608 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 1.1256 -4.1571 1.9469 31 1 2.9291 -4.3713 1.9090 32 1 3.6635 -5.9725 -0.5048 33 1 5.6459 -6.8361 -1.1817 34 1 7.5993 -8.5768 -1.1145 35 1 -0.7791 -5.6465 -0.6600 36 1 -0.7020 -3.8599 -0.3360 37 1 0.2423 -3.4071 -2.5512 38 1 -0.5682 -4.9679 -3.0059 39 1 2.2818 -4.7650 -2.5478 40 1 1.3458 -6.2909 -2.2352 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078602234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:28 Heat of formation + Delta-G solvation = 19.997993 kcal Electronic energy + Delta-G solvation = -25059.072944 eV Core-core repulsion = 21288.869936 eV Total energy + Delta-G solvation = -3770.203007 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.65089 -41.87280 -39.94462 -38.08362 -36.34028 -35.75737 -34.37970 -33.41661 -31.63535 -30.57656 -26.79774 -26.61825 -25.55065 -25.04595 -23.55263 -22.57654 -21.61046 -21.13764 -19.80084 -19.52874 -18.51411 -17.59847 -17.53636 -17.14509 -16.69593 -16.34131 -16.20544 -15.77806 -15.50532 -15.35049 -14.89239 -14.26034 -14.10276 -13.87056 -13.85305 -13.44216 -13.30162 -13.22812 -13.14708 -12.86233 -12.73866 -12.48460 -12.32792 -12.13057 -11.90258 -11.84930 -11.31161 -11.23936 -10.98859 -10.98076 -10.87681 -10.66116 -9.95547 -9.67399 -8.93541 -7.91667 -5.18974 0.01577 0.02986 1.04600 1.49078 1.50047 1.58186 2.00779 2.21858 2.48698 2.58327 3.39468 3.49925 3.56546 3.62776 3.74266 3.81126 3.95606 4.04184 4.15042 4.18839 4.28685 4.44387 4.61744 4.67663 4.75027 4.76849 4.88835 4.91601 5.03865 5.10511 5.15478 5.20177 5.23580 5.27764 5.51661 5.61027 5.64867 5.68311 5.73637 6.30392 6.55036 7.19356 7.37605 8.14832 8.37975 9.31550 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017701 B = 0.003004 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.447627 B = 9318.399946 C = 9782.379122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.180 3.820 11 H 0.084 0.916 12 C -0.173 4.173 13 C 0.150 3.850 14 H 0.089 0.911 15 N -0.681 5.681 16 C 0.582 3.418 17 O -0.566 6.566 18 C -0.221 4.221 19 C -0.188 4.188 20 C 0.001 3.999 21 O -0.173 6.173 22 C 0.078 3.922 23 Cl 0.046 6.954 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.130 4.130 27 C -0.108 4.108 28 H 0.249 0.751 29 H 0.377 0.623 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.413 0.587 33 H 0.193 0.807 34 H 0.266 0.734 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.240 -20.466 -5.019 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.372 4.372 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.069 3.931 11 H 0.102 0.898 12 C -0.216 4.216 13 C 0.044 3.956 14 H 0.107 0.893 15 N -0.331 5.331 16 C 0.370 3.630 17 O -0.447 6.447 18 C -0.227 4.227 19 C -0.207 4.207 20 C -0.064 4.064 21 O -0.070 6.070 22 C -0.002 4.002 23 Cl 0.075 6.925 24 C -0.113 4.113 25 C -0.152 4.152 26 C -0.168 4.168 27 C -0.145 4.145 28 H 0.058 0.942 29 H 0.211 0.789 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.250 0.750 33 H 0.211 0.789 34 H 0.282 0.718 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.997 -20.961 -4.243 25.025 hybrid contribution -0.272 1.472 0.304 1.527 sum 12.725 -19.489 -3.938 23.606 Atomic orbital electron populations 1.69816 1.06572 1.25882 1.59669 1.25493 0.96253 1.00884 1.03961 0.85214 0.77720 0.79906 0.77362 1.21375 1.22735 1.19532 1.19682 0.91520 0.85307 1.40674 0.90470 1.42550 1.05630 1.00592 1.86999 1.21605 0.94797 0.83550 0.93103 0.89847 1.24172 1.01034 0.96974 0.99381 1.21394 0.85639 0.92318 0.96261 0.89283 1.45191 1.22034 1.25332 1.40547 1.17386 0.84420 0.80270 0.80880 1.90812 1.55085 1.65510 1.33273 1.21150 0.98964 0.98312 1.04271 1.23230 0.93081 1.03848 1.00558 1.24986 1.02264 0.87117 0.92040 1.83768 1.32109 1.47644 1.43524 1.22695 0.87501 0.94577 0.95392 1.98477 1.77038 1.71092 1.45935 1.23327 0.97323 0.95978 0.94676 1.22520 0.93942 1.01446 0.97273 1.22651 0.98187 1.00025 0.95921 1.22608 0.97953 1.00485 0.93496 0.94177 0.78923 0.91468 0.92488 0.74987 0.78941 0.71841 0.88559 0.93392 0.92399 0.90220 0.90841 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.32 29.55 68.60 2.03 47.34 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.24 -12.84 9.97 84.03 0.84 -12.00 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.64 5.33 -321.24 -1.71 -36.35 16 10 C 0.18 6.63 4.28 45.35 0.19 6.82 16 11 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 12 C -0.17 -6.13 7.70 31.30 0.24 -5.89 16 13 C 0.15 4.42 4.09 45.28 0.19 4.60 16 14 H 0.09 2.85 7.50 -2.39 -0.02 2.83 16 15 N -0.68 -16.62 5.06 -444.61 -2.25 -18.87 16 16 C 0.58 16.00 7.81 86.60 0.68 16.68 16 17 O -0.57 -19.61 15.27 -4.12 -0.06 -19.67 16 18 C -0.22 -4.84 6.32 -18.97 -0.12 -4.96 16 19 C -0.19 -2.41 10.60 23.65 0.25 -2.16 16 20 C 0.00 0.01 12.03 66.88 0.80 0.81 16 21 O -0.17 -2.90 10.53 3.43 0.04 -2.86 16 22 C 0.08 1.70 7.99 67.45 0.54 2.24 16 23 Cl 0.05 1.06 27.91 -2.72 -0.08 0.98 16 24 C -0.11 -3.30 0.92 -52.31 -0.05 -3.35 16 25 C -0.11 -3.53 7.47 30.89 0.23 -3.30 16 26 C -0.13 -3.77 8.08 31.23 0.25 -3.52 16 27 C -0.11 -2.65 7.45 30.88 0.23 -2.42 16 28 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 29 H 0.38 19.66 5.92 -92.71 -0.55 19.11 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 7.87 7.75 -92.71 -0.72 7.15 16 33 H 0.19 1.35 7.74 -2.91 -0.02 1.33 16 34 H 0.27 -0.34 8.06 -2.91 -0.02 -0.36 16 35 H 0.10 2.56 8.14 -2.38 -0.02 2.55 16 36 H 0.05 1.80 6.42 -2.39 -0.02 1.79 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -70.47 352.85 2.81 -67.66 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.17 Total: 29.99 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 4.74 Total: -10.10 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -3.68 Total: -113.34 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.03 Total: -22.54 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 17 Polarization: 1.06 SS G_CDS: -0.08 Total: 0.98 kcal Total: -70.47 2.81 -67.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078602234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.659 kcal (2) G-P(sol) polarization free energy of solvation -70.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds