Wall clock time and date at job start Tue Mar 31 2020 17:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00329 * 2 1 4 4 H 1.48499 * 109.47137 * 240.00379 * 3 2 1 5 5 H 1.48494 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46976 * 120.00507 * 3 2 1 7 7 C 1.37882 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99791 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00135 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47414 * 300.00842 * 9 7 2 11 11 N 1.46497 * 109.46916 * 180.02562 * 9 7 2 12 12 C 1.34777 * 119.99642 * 155.00427 * 11 9 7 13 13 O 1.21592 * 120.00201 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00110 * 179.97438 * 12 11 9 15 15 C 1.46502 * 120.00104 * 179.97438 * 14 12 11 16 16 H 1.08998 * 110.43583 * 323.91638 * 15 14 12 17 17 C 1.54265 * 110.48421 * 86.46032 * 15 14 12 18 18 C 1.53873 * 106.59997 * 142.29132 * 17 15 14 19 19 C 1.54268 * 106.59703 * 359.97438 * 18 17 15 20 20 H 1.09002 * 110.48435 * 95.07241 * 19 18 17 21 21 C 1.50704 * 110.48600 * 217.58396 * 19 18 17 22 22 O 1.20820 * 120.00188 * 116.75996 * 21 19 18 23 23 O 1.34224 * 119.99977 * 296.75847 * 21 19 18 24 24 C 1.54888 * 110.48532 * 201.23512 * 15 14 12 25 25 C 1.53006 * 109.46549 * 60.00554 * 9 7 2 26 26 F 1.39906 * 109.46750 * 179.97438 * 25 9 7 27 27 F 1.39902 * 109.47096 * 299.99670 * 25 9 7 28 28 F 1.39897 * 109.47073 * 60.00030 * 25 9 7 29 29 H 0.97005 * 119.99452 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00502 * 335.00033 * 11 9 7 31 31 H 0.96998 * 119.99596 * 0.02562 * 14 12 11 32 32 H 1.08993 * 110.03585 * 22.99628 * 17 15 14 33 33 H 1.09005 * 110.02598 * 261.57195 * 17 15 14 34 34 H 1.09002 * 110.03017 * 240.71676 * 18 17 15 35 35 H 1.08996 * 110.07624 * 119.30418 * 18 17 15 36 36 H 0.96698 * 117.00324 * 180.02562 * 23 21 19 37 37 H 1.08992 * 110.76047 * 85.06590 * 24 15 14 38 38 H 1.09000 * 110.75534 * 321.69159 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8895 11 7 2.2029 -3.6127 -0.0005 12 6 1.8367 -4.8123 0.4927 13 8 0.7163 -4.9703 0.9381 14 7 2.7122 -5.8370 0.4923 15 6 2.3143 -7.1408 1.0289 16 1 1.6559 -7.0138 1.8882 17 6 1.6225 -7.9850 -0.0613 18 6 2.0811 -9.4383 0.1510 19 6 3.0362 -9.4265 1.3625 20 1 2.4954 -9.6705 2.2769 21 6 4.1716 -10.3941 1.1485 22 8 5.3072 -9.9874 1.0804 23 8 3.9212 -11.7078 1.0335 24 6 3.5629 -7.9711 1.4171 25 6 0.3709 -2.5799 -1.2496 26 9 -0.3282 -3.7917 -1.2499 27 9 -0.5382 -1.5165 -1.2491 28 9 1.1749 -2.5056 -2.3920 29 1 -0.4849 0.8401 0.0004 30 1 3.0967 -3.4867 -0.3555 31 1 3.6061 -5.7108 0.1373 32 1 1.9246 -7.6386 -1.0496 33 1 0.5398 -7.9159 0.0441 34 1 2.6060 -9.7973 -0.7343 35 1 1.2215 -10.0753 0.3591 36 1 4.6816 -12.2894 0.8976 37 1 3.8972 -7.7187 2.4233 38 1 4.3650 -7.8236 0.6939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:58 Heat of formation + Delta-G solvation = -267.514816 kcal Electronic energy + Delta-G solvation = -28461.401124 eV Core-core repulsion = 23696.164721 eV Total energy + Delta-G solvation = -4765.236403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.30088 -45.95261 -45.57261 -40.83027 -39.52731 -37.73387 -36.38650 -34.64397 -33.49457 -32.46584 -29.38074 -28.88762 -27.35318 -24.53406 -23.45438 -21.91707 -20.63591 -20.52013 -19.97173 -18.32829 -18.31316 -17.33074 -16.81147 -16.77638 -16.54934 -16.41332 -15.79587 -15.46215 -15.04222 -14.78909 -14.24051 -14.03557 -13.61355 -13.44282 -13.29847 -12.87464 -12.62021 -12.36387 -12.31018 -12.23034 -12.17766 -11.94567 -11.93538 -11.78058 -11.66545 -11.51991 -11.18300 -11.14375 -10.86905 -10.85012 -10.76135 -10.52028 -10.38584 -9.65943 -9.53002 -8.80534 -8.69759 -8.15392 -6.22118 -4.46007 1.88335 2.65339 3.18218 3.21098 3.25968 3.29190 3.76221 4.13849 4.21567 4.29678 4.59867 4.62453 4.85962 4.95158 5.03426 5.09841 5.19060 5.23052 5.29620 5.39934 5.61612 5.82264 5.86576 5.90561 5.92023 6.13290 6.16193 6.19284 6.25872 6.83272 6.86830 7.22761 7.38936 7.56424 7.63892 7.70550 8.50683 8.67560 9.16246 9.26983 10.69406 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.025826 B = 0.002946 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.913405 B = 9501.628136 C =10097.714170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.727 5.727 12 C 0.699 3.301 13 O -0.583 6.583 14 N -0.747 5.747 15 C 0.165 3.835 16 H 0.097 0.903 17 C -0.139 4.139 18 C -0.107 4.107 19 C -0.086 4.086 20 H 0.118 0.882 21 C 0.487 3.513 22 O -0.514 6.514 23 O -0.516 6.516 24 C -0.115 4.115 25 C 0.416 3.584 26 F -0.217 7.217 27 F -0.138 7.138 28 F -0.211 7.211 29 H 0.269 0.731 30 H 0.394 0.606 31 H 0.393 0.607 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.409 0.591 37 H 0.083 0.917 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.649 -17.361 1.216 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.103 0.897 11 N -0.379 5.379 12 C 0.399 3.601 13 O -0.460 6.460 14 N -0.403 5.403 15 C 0.059 3.941 16 H 0.115 0.885 17 C -0.178 4.178 18 C -0.145 4.145 19 C -0.106 4.106 20 H 0.136 0.864 21 C 0.329 3.671 22 O -0.402 6.402 23 O -0.328 6.328 24 C -0.153 4.153 25 C 0.359 3.641 26 F -0.199 7.199 27 F -0.119 7.119 28 F -0.193 7.193 29 H 0.079 0.921 30 H 0.227 0.773 31 H 0.227 0.773 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.335 -16.961 1.656 17.857 hybrid contribution 1.628 0.473 -0.802 1.876 sum 6.964 -16.488 0.854 17.918 Atomic orbital electron populations 1.70397 1.05841 1.27444 1.43599 1.25076 0.95152 1.00068 0.94087 0.86273 0.79329 0.81349 0.78885 1.19853 1.20887 1.19805 1.20849 0.93761 0.88164 1.56221 0.90558 1.19580 0.88237 0.84930 0.91560 0.89737 1.45272 1.17377 1.09745 1.65506 1.16079 0.84421 0.80450 0.79147 1.90913 1.19557 1.82972 1.52599 1.45116 1.16267 1.10289 1.68617 1.21493 0.94903 0.81292 0.96447 0.88453 1.22640 1.01950 0.93052 1.00165 1.22066 0.98325 0.98194 0.95933 1.21828 0.93625 0.92574 1.02537 0.86418 1.23422 0.90296 0.81699 0.71655 1.90731 1.24283 1.78937 1.46232 1.84552 1.44544 1.19389 1.84278 1.22708 0.98007 0.90854 1.03718 1.23192 0.80924 0.72790 0.87186 1.93071 1.81480 1.48331 1.96969 1.93401 1.68442 1.53840 1.96205 1.92981 1.74474 1.96193 1.55609 0.92075 0.77251 0.77288 0.90831 0.90278 0.91314 0.90171 0.73263 0.89863 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.01 9.50 55.43 0.53 -22.48 16 2 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -14.06 8.46 -34.44 -0.29 -14.35 16 8 H 0.08 1.82 7.74 -52.49 -0.41 1.42 16 9 C 0.26 6.53 2.21 -69.08 -0.15 6.38 16 10 H 0.09 2.36 7.57 -51.93 -0.39 1.96 16 11 N -0.73 -14.71 4.99 -59.81 -0.30 -15.00 16 12 C 0.70 13.60 8.09 -86.92 -0.70 12.90 16 13 O -0.58 -13.62 14.63 5.28 0.08 -13.54 16 14 N -0.75 -10.49 5.12 -57.05 -0.29 -10.78 16 15 C 0.16 1.97 3.16 -66.27 -0.21 1.76 16 16 H 0.10 1.30 7.66 -51.93 -0.40 0.90 16 17 C -0.14 -1.55 6.53 -25.61 -0.17 -1.72 16 18 C -0.11 -0.89 6.36 -25.61 -0.16 -1.05 16 19 C -0.09 -0.69 3.36 -90.12 -0.30 -1.00 16 20 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 21 C 0.49 4.35 7.49 36.01 0.27 4.62 16 22 O -0.51 -6.17 16.51 -18.75 -0.31 -6.48 16 23 O -0.52 -3.40 13.42 -39.24 -0.53 -3.92 16 24 C -0.11 -1.07 5.52 -24.75 -0.14 -1.21 16 25 C 0.42 10.70 2.81 37.16 0.10 10.80 16 26 F -0.22 -5.54 15.68 2.25 0.04 -5.51 16 27 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 28 F -0.21 -5.22 16.94 2.25 0.04 -5.18 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 6.84 8.55 -40.82 -0.35 6.49 16 31 H 0.39 4.48 8.54 -40.82 -0.35 4.13 16 32 H 0.07 0.88 8.04 -51.93 -0.42 0.47 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.41 1.06 9.10 45.56 0.41 1.47 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.87 7.39 -51.93 -0.38 0.48 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -33.14 333.05 -6.08 -39.22 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -3.51 Total: 8.71 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: -1.84 Total: 18.72 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.06 Total: -48.27 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.76 Total: -23.95 kcal Atomic # 9 Polarization: -14.59 SS G_CDS: 0.10 Total: -14.49 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.14 -6.08 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.292 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds