Wall clock time and date at job start Tue Mar 31 2020 17:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99631 * 2 1 4 4 H 1.48502 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47427 * 299.99743 * 3 2 1 6 6 H 1.48503 * 109.47407 * 60.00085 * 3 2 1 7 7 C 1.37879 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99654 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47240 * 60.00568 * 9 7 2 11 11 N 1.46506 * 109.46946 * 180.02562 * 9 7 2 12 12 C 1.34773 * 119.99969 * 204.72408 * 11 9 7 13 13 O 1.21586 * 120.00012 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99940 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00211 * 180.02562 * 14 12 11 16 16 H 1.09001 * 110.01531 * 325.06120 * 15 14 12 17 17 C 1.53874 * 110.03482 * 86.45413 * 15 14 12 18 18 C 1.54265 * 106.60279 * 119.28823 * 17 15 14 19 19 C 1.54895 * 104.19375 * 23.60772 * 18 17 15 20 20 H 1.09000 * 110.75456 * 80.37589 * 19 18 17 21 21 C 1.50706 * 110.75196 * 203.56335 * 19 18 17 22 22 O 1.20819 * 119.99856 * 118.55072 * 21 19 18 23 23 O 1.34228 * 119.99801 * 298.54526 * 21 19 18 24 24 C 1.54264 * 110.03438 * 203.62102 * 15 14 12 25 25 C 1.52995 * 109.47453 * 300.00211 * 9 7 2 26 26 F 1.39895 * 109.47484 * 300.00168 * 25 9 7 27 27 F 1.39905 * 109.47080 * 60.00438 * 25 9 7 28 28 F 1.39900 * 109.47131 * 180.02562 * 25 9 7 29 29 H 0.97000 * 120.00744 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99811 * 25.00460 * 11 9 7 31 31 H 0.97004 * 120.00041 * 359.97438 * 14 12 11 32 32 H 1.09005 * 110.02855 * 238.57208 * 17 15 14 33 33 H 1.09000 * 110.03254 * 359.94894 * 17 15 14 34 34 H 1.08995 * 110.48999 * 142.28710 * 18 17 15 35 35 H 1.09003 * 110.48079 * 264.93278 * 18 17 15 36 36 H 0.96696 * 116.99794 * 180.02562 * 23 21 19 37 37 H 1.09007 * 110.48332 * 335.78004 * 24 15 14 38 38 H 1.08999 * 110.49157 * 98.42501 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 7 2.2032 -3.6126 -0.0005 12 6 1.8353 -4.8137 -0.4887 13 8 0.7134 -4.9731 -0.9295 14 7 2.7110 -5.8382 -0.4882 15 6 2.3114 -7.1437 -1.0194 16 1 1.2605 -7.3307 -0.7981 17 6 2.5461 -7.1887 -2.5394 18 6 3.5567 -8.3256 -2.7959 19 6 3.4015 -9.2561 -1.5674 20 1 2.5339 -9.9059 -1.6822 21 6 4.6514 -10.0704 -1.3529 22 8 5.2788 -9.9551 -0.3269 23 8 5.0675 -10.9237 -2.3018 24 6 3.1876 -8.2549 -0.4051 25 6 0.3719 -2.5805 1.2489 26 9 1.1765 -2.5066 2.3910 27 9 -0.5373 -1.5172 1.2494 28 9 -0.3271 -3.7923 1.2492 29 1 -0.4851 0.8400 0.0004 30 1 3.0970 -3.4864 0.3546 31 1 3.6062 -5.7110 -0.1369 32 1 1.6093 -7.3983 -3.0558 33 1 2.9565 -6.2389 -2.8821 34 1 3.3062 -8.8592 -3.7127 35 1 4.5709 -7.9296 -2.8488 36 1 5.8742 -11.4244 -2.1188 37 1 4.1422 -7.8475 -0.0720 38 1 2.6677 -8.7370 0.4228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:02 Heat of formation + Delta-G solvation = -266.671241 kcal Electronic energy + Delta-G solvation = -28448.192268 eV Core-core repulsion = 23682.992445 eV Total energy + Delta-G solvation = -4765.199823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.29741 -45.94869 -45.56844 -40.81885 -39.55249 -37.73780 -36.38918 -34.63794 -33.44932 -32.46328 -29.37187 -28.88792 -27.34972 -24.53530 -23.52570 -21.94984 -20.75942 -20.27967 -19.98032 -18.35958 -18.31531 -17.30439 -16.81244 -16.77684 -16.57744 -16.34073 -15.88667 -15.45353 -15.03363 -14.78061 -14.32286 -13.98553 -13.61092 -13.44562 -13.27324 -12.86214 -12.55741 -12.35929 -12.32822 -12.24406 -12.12699 -11.94640 -11.91510 -11.78954 -11.70935 -11.49786 -11.21144 -11.13531 -10.85482 -10.81500 -10.76123 -10.63230 -10.38349 -9.62745 -9.51548 -8.80216 -8.70654 -8.15348 -6.22601 -4.46160 1.88505 2.66129 3.17969 3.20169 3.26695 3.30983 3.76790 4.12568 4.19848 4.30408 4.59581 4.62815 4.86311 4.95019 5.03750 5.08382 5.20184 5.23945 5.28446 5.39796 5.61742 5.80559 5.87164 5.92203 5.92784 6.09622 6.13996 6.18873 6.25887 6.85360 6.87088 7.23025 7.39179 7.56689 7.63781 7.70608 8.51126 8.67928 9.16426 9.27292 10.69071 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.002961 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.142227 B = 9452.858582 C = 9850.380695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.583 6.583 14 N -0.748 5.748 15 C 0.163 3.837 16 H 0.096 0.904 17 C -0.137 4.137 18 C -0.108 4.108 19 C -0.088 4.088 20 H 0.119 0.881 21 C 0.487 3.513 22 O -0.514 6.514 23 O -0.516 6.516 24 C -0.114 4.114 25 C 0.415 3.585 26 F -0.211 7.211 27 F -0.138 7.138 28 F -0.216 7.216 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.393 0.607 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.409 0.591 37 H 0.086 0.914 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -16.277 -4.089 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.103 0.897 11 N -0.379 5.379 12 C 0.398 3.602 13 O -0.460 6.460 14 N -0.404 5.404 15 C 0.057 3.943 16 H 0.114 0.886 17 C -0.176 4.176 18 C -0.146 4.146 19 C -0.107 4.107 20 H 0.137 0.863 21 C 0.330 3.670 22 O -0.402 6.402 23 O -0.328 6.328 24 C -0.152 4.152 25 C 0.359 3.641 26 F -0.193 7.193 27 F -0.119 7.119 28 F -0.198 7.198 29 H 0.078 0.922 30 H 0.227 0.773 31 H 0.226 0.774 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.267 0.733 37 H 0.105 0.895 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.917 -16.000 -4.275 17.948 hybrid contribution 1.642 0.552 0.834 1.922 sum 8.559 -15.449 -3.441 17.993 Atomic orbital electron populations 1.70412 1.05837 1.27226 1.43785 1.25079 0.95147 1.00088 0.94105 0.86164 0.79786 0.82022 0.77863 1.19441 1.20582 1.20591 1.20921 0.93814 0.88126 1.55984 0.90468 1.19591 0.88245 0.84975 0.91549 0.89735 1.45283 1.17337 1.09640 1.65663 1.16085 0.84389 0.80569 0.79116 1.90912 1.19514 1.82818 1.52801 1.45261 1.15983 1.10257 1.68927 1.21304 0.99806 0.81165 0.92031 0.88595 1.22666 0.99490 0.98866 0.96557 1.22344 1.00549 0.95597 0.96116 1.21998 0.93579 0.96173 0.98990 0.86275 1.23400 0.86196 0.77197 0.80246 1.90735 1.56418 1.64727 1.28315 1.84551 1.47062 1.53259 1.47880 1.22585 1.01482 0.94666 0.96457 1.23190 0.80917 0.72795 0.87210 1.92981 1.74440 1.96195 1.55635 1.93401 1.68433 1.53852 1.96210 1.93071 1.81480 1.48325 1.96968 0.92188 0.77259 0.77371 0.90458 0.90334 0.90156 0.91102 0.73266 0.89540 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.99 9.50 55.43 0.53 -22.46 16 2 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.55 -14.00 8.46 -34.44 -0.29 -14.30 16 8 H 0.08 1.85 7.74 -52.49 -0.41 1.45 16 9 C 0.26 6.52 2.21 -69.08 -0.15 6.37 16 10 H 0.09 2.36 7.59 -51.93 -0.39 1.96 16 11 N -0.73 -14.72 4.99 -59.81 -0.30 -15.02 16 12 C 0.70 13.59 8.08 -86.92 -0.70 12.89 16 13 O -0.58 -13.64 14.57 5.29 0.08 -13.56 16 14 N -0.75 -10.50 5.00 -57.58 -0.29 -10.79 16 15 C 0.16 1.94 3.23 -66.81 -0.22 1.72 16 16 H 0.10 1.32 7.60 -51.93 -0.39 0.92 16 17 C -0.14 -1.44 6.59 -25.61 -0.17 -1.61 16 18 C -0.11 -0.86 6.25 -25.07 -0.16 -1.01 16 19 C -0.09 -0.70 3.39 -89.77 -0.30 -1.00 16 20 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 21 C 0.49 4.32 7.63 36.01 0.27 4.60 16 22 O -0.51 -6.20 16.56 -18.74 -0.31 -6.51 16 23 O -0.52 -3.35 13.41 -39.25 -0.53 -3.88 16 24 C -0.11 -1.08 5.56 -25.07 -0.14 -1.22 16 25 C 0.42 10.73 2.81 37.16 0.10 10.84 16 26 F -0.21 -5.24 16.94 2.25 0.04 -5.20 16 27 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 28 F -0.22 -5.58 15.64 2.25 0.04 -5.55 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 6.86 8.55 -40.82 -0.35 6.51 16 31 H 0.39 4.50 8.36 -40.82 -0.34 4.15 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.95 7.92 -51.93 -0.41 0.53 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 36 H 0.41 1.04 9.10 45.56 0.41 1.45 16 37 H 0.09 0.86 7.13 -51.92 -0.37 0.49 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -33.23 332.71 -6.06 -39.29 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.49 Total: 8.60 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: -1.85 Total: 18.86 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.06 Total: -48.28 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.76 Total: -23.95 kcal Atomic # 9 Polarization: -14.66 SS G_CDS: 0.10 Total: -14.56 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.23 -6.06 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.377 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds