Wall clock time and date at job start Tue Mar 31 2020 13:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 110.53345 * 2 1 4 4 C 1.38203 * 120.00198 * 242.85048 * 3 2 1 5 5 C 1.38431 * 120.00243 * 179.97438 * 4 3 2 6 6 F 1.35101 * 120.00030 * 179.97438 * 5 4 3 7 7 C 1.38469 * 119.99609 * 359.70032 * 5 4 3 8 8 C 1.38157 * 120.00377 * 0.58202 * 7 5 4 9 9 C 1.38435 * 119.99923 * 62.83015 * 3 2 1 10 10 F 1.35100 * 120.00091 * 0.02562 * 9 3 2 11 11 N 1.47304 * 110.73091 * 237.07869 * 2 1 3 12 12 C 1.34519 * 106.62105 * 241.40690 * 11 2 1 13 13 O 1.21547 * 123.77269 * 179.97438 * 12 11 2 14 14 N 1.33797 * 112.45911 * 0.02562 * 12 11 2 15 15 C 1.46500 * 124.17714 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46981 * 269.95580 * 15 14 12 17 17 C 1.50699 * 109.47004 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00209 * 179.97438 * 17 16 15 20 20 N 1.31504 * 120.00113 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99528 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46798 * 90.00283 * 21 19 17 23 23 H 1.48497 * 109.46973 * 209.99815 * 21 19 17 24 24 H 1.48496 * 109.47472 * 329.99958 * 21 19 17 25 25 C 1.34768 * 111.64059 * 359.97438 * 14 12 11 26 26 O 1.21232 * 127.15574 * 179.97438 * 25 14 12 27 27 H 1.09002 * 109.47486 * 59.99925 * 1 2 3 28 28 H 1.08995 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47632 * 300.00115 * 1 2 3 30 30 H 1.08002 * 120.00072 * 359.95623 * 4 3 2 31 31 H 1.08004 * 119.99976 * 180.31492 * 7 5 4 32 32 H 1.08002 * 120.00488 * 179.72250 * 8 7 5 33 33 H 0.97004 * 126.69166 * 61.38887 * 11 2 1 34 34 H 1.09003 * 109.47292 * 29.95836 * 15 14 12 35 35 H 1.09000 * 109.46623 * 149.95655 * 15 14 12 36 36 H 1.09003 * 109.47317 * 300.00241 * 16 15 14 37 37 H 1.08991 * 109.47420 * 60.00259 * 16 15 14 38 38 H 0.97005 * 120.00169 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.8124 1.8669 -1.0650 5 6 3.2975 3.1634 -1.0652 6 9 4.0348 3.6085 -2.1061 7 6 3.0222 4.0057 -0.0013 8 6 2.2735 3.5486 1.0661 9 6 1.7887 2.2515 1.0666 10 9 1.0519 1.8061 2.1077 11 7 2.0514 -0.7487 -1.1564 12 6 2.7645 -1.7757 -0.6601 13 8 3.3357 -2.5975 -1.3499 14 7 2.7740 -1.7921 0.6777 15 6 3.4720 -2.7969 1.4835 16 6 2.5305 -3.9701 1.7632 17 6 3.2483 -5.0034 2.5927 18 1 4.2733 -4.8396 2.8909 19 6 2.5962 -6.1576 2.9717 20 7 3.2227 -7.0596 3.6951 21 14 0.8226 -6.4400 2.4577 22 1 0.7923 -7.1472 1.1523 23 1 0.1353 -7.2647 3.4836 24 1 0.1305 -5.1325 2.3286 25 6 2.0630 -0.7694 1.1923 26 8 1.8859 -0.5176 2.3649 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.0233 1.2113 -1.8969 31 1 3.3964 5.0189 -0.0038 32 1 2.0626 4.2042 1.8980 33 1 1.9082 -0.5418 -2.0933 34 1 4.3468 -3.1545 0.9405 35 1 3.7872 -2.3511 2.4269 36 1 1.6557 -3.6125 2.3063 37 1 2.2153 -4.4159 0.8199 38 1 2.7638 -7.8714 3.9621 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097336283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:33 Heat of formation + Delta-G solvation = -98.165745 kcal Electronic energy + Delta-G solvation = -27862.785878 eV Core-core repulsion = 23535.662226 eV Total energy + Delta-G solvation = -4327.123652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.33175 -49.16834 -42.55396 -39.33356 -38.41557 -36.43954 -35.46186 -33.14923 -32.02205 -30.97945 -30.40559 -29.58827 -26.06962 -24.91383 -23.71290 -23.08843 -22.04626 -21.09294 -20.00132 -18.44215 -17.87374 -17.70915 -17.32199 -17.00977 -16.46558 -16.28580 -16.04841 -15.63676 -15.47151 -15.08373 -14.74821 -14.59117 -14.31703 -14.24659 -13.96728 -13.80684 -13.42485 -13.25100 -12.94256 -12.77104 -12.69431 -12.53986 -12.25129 -11.82990 -11.49231 -11.09016 -10.99171 -10.59759 -10.29904 -10.10605 -9.88556 -9.77393 -9.57428 -9.33904 -9.16112 -8.94460 -8.58397 -6.09096 -4.08920 0.39298 0.51154 1.68084 2.32552 2.77083 3.06179 3.18232 3.29983 3.36612 3.40001 3.56235 3.70871 3.83582 3.93272 4.24868 4.36542 4.41991 4.49695 4.68654 5.02463 5.16571 5.24176 5.25828 5.33403 5.44710 5.48735 5.53437 5.58229 5.73112 5.83267 5.96840 6.08727 6.27344 6.41351 6.67120 7.05354 7.10650 7.35343 7.48586 7.67746 8.22252 8.43145 8.92598 9.51780 11.03728 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.003646 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.306731 B = 7677.844983 C = 8112.320543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.165 3.835 3 C -0.102 4.102 4 C -0.107 4.107 5 C 0.089 3.911 6 F -0.133 7.133 7 C -0.117 4.117 8 C -0.124 4.124 9 C 0.118 3.882 10 F -0.111 7.111 11 N -0.727 5.727 12 C 0.703 3.297 13 O -0.530 6.530 14 N -0.569 5.569 15 C 0.128 3.872 16 C -0.024 4.024 17 C -0.521 4.521 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.878 3.122 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.528 3.472 26 O -0.443 6.443 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.436 0.564 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 25.214 -10.490 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.073 3.927 3 C -0.105 4.105 4 C -0.126 4.126 5 C 0.069 3.931 6 F -0.111 7.111 7 C -0.136 4.136 8 C -0.143 4.143 9 C 0.098 3.902 10 F -0.089 7.089 11 N -0.392 5.392 12 C 0.404 3.596 13 O -0.402 6.402 14 N -0.314 5.314 15 C 0.009 3.991 16 C -0.062 4.062 17 C -0.560 4.560 18 H 0.095 0.905 19 C -0.129 4.129 20 N -0.536 5.536 21 Si 0.706 3.294 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.192 1.192 25 C 0.312 3.688 26 O -0.311 6.311 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.281 0.719 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.850 24.601 -10.020 27.002 hybrid contribution -0.952 -0.207 -0.696 1.197 sum -5.802 24.394 -10.716 27.269 Atomic orbital electron populations 1.22063 0.89014 1.04799 1.04732 1.20071 0.97353 0.88749 0.86525 1.19403 1.01508 0.94369 0.95203 1.20805 0.97646 0.94720 0.99435 1.17535 0.95960 0.93098 0.86466 1.91541 1.74402 1.89434 1.55730 1.21082 0.99229 1.00803 0.92460 1.21037 0.98949 0.94341 0.99981 1.17457 0.94759 0.92726 0.85289 1.91642 1.73336 1.89220 1.54675 1.45631 1.55838 1.29383 1.08381 1.15913 0.79587 0.81839 0.82255 1.91032 1.47610 1.40558 1.61019 1.46747 1.48606 1.28446 1.07591 1.22040 0.96063 0.87207 0.93762 1.19895 0.95739 0.93227 0.97314 1.20841 1.00716 1.01803 1.32617 0.90509 1.24932 0.97968 0.95643 0.94389 1.69889 1.37264 1.09350 1.37078 0.86794 0.85484 0.78564 0.78594 1.20100 1.21123 1.19177 1.20394 0.78151 0.80888 0.89394 1.90832 1.55567 1.68756 1.15918 0.90120 0.90213 0.89197 0.83408 0.83371 0.83033 0.71876 0.88905 0.89130 0.96036 0.96218 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.80 37.16 0.33 -1.09 16 2 C 0.16 1.92 1.03 -133.25 -0.14 1.78 16 3 C -0.10 -1.03 4.82 -104.56 -0.50 -1.54 16 4 C -0.11 -0.93 9.35 -39.52 -0.37 -1.30 16 5 C 0.09 0.74 7.30 -39.42 -0.29 0.45 16 6 F -0.13 -1.19 17.27 2.25 0.04 -1.15 16 7 C -0.12 -0.79 10.02 -39.53 -0.40 -1.19 16 8 C -0.12 -0.92 10.02 -39.52 -0.40 -1.32 16 9 C 0.12 1.19 6.82 -39.42 -0.27 0.92 16 10 F -0.11 -1.35 13.21 2.25 0.03 -1.32 16 11 N -0.73 -8.23 4.71 -54.03 -0.25 -8.49 16 12 C 0.70 11.58 8.62 -88.02 -0.76 10.82 16 13 O -0.53 -10.51 17.48 5.32 0.09 -10.41 16 14 N -0.57 -10.14 2.60 -120.73 -0.31 -10.45 16 15 C 0.13 2.64 5.64 -4.04 -0.02 2.62 16 16 C -0.02 -0.58 4.37 -27.88 -0.12 -0.70 16 17 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 18 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 20 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 21 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 25 C 0.53 8.57 6.75 -10.56 -0.07 8.50 16 26 O -0.44 -8.20 15.60 5.60 0.09 -8.12 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.88 6.63 -51.93 -0.34 0.54 16 30 H 0.15 1.12 6.62 -52.49 -0.35 0.77 16 31 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 32 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.44 3.46 8.37 -40.82 -0.34 3.12 16 34 H 0.09 1.91 7.86 -51.93 -0.41 1.50 16 35 H 0.09 1.83 8.00 -51.93 -0.42 1.41 16 36 H 0.02 0.54 7.20 -51.93 -0.37 0.16 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -34.48 332.69 -6.54 -41.03 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.90 Total: -1.34 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -3.44 Total: 4.73 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.20 Total: -45.88 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.18 Total: -18.53 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.07 Total: -2.47 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.48 -6.54 -41.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097336283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.140 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds