Wall clock time and date at job start Tue Mar 31 2020 13:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 110.53345 * 2 1 4 4 C 1.38203 * 120.00198 * 242.85048 * 3 2 1 5 5 C 1.38431 * 120.00243 * 179.97438 * 4 3 2 6 6 F 1.35101 * 120.00030 * 179.97438 * 5 4 3 7 7 C 1.38469 * 119.99609 * 359.70032 * 5 4 3 8 8 C 1.38157 * 120.00377 * 0.58202 * 7 5 4 9 9 C 1.38435 * 119.99923 * 62.83015 * 3 2 1 10 10 F 1.35100 * 120.00091 * 0.02562 * 9 3 2 11 11 N 1.47304 * 110.73091 * 237.07869 * 2 1 3 12 12 C 1.34519 * 106.62105 * 241.40690 * 11 2 1 13 13 O 1.21547 * 123.77269 * 179.97438 * 12 11 2 14 14 N 1.33797 * 112.45911 * 0.02562 * 12 11 2 15 15 C 1.46500 * 124.17714 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46981 * 269.95580 * 15 14 12 17 17 C 1.50699 * 109.47004 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00209 * 179.97438 * 17 16 15 20 20 N 1.31504 * 120.00113 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99528 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46798 * 90.00283 * 21 19 17 23 23 H 1.48497 * 109.46973 * 209.99815 * 21 19 17 24 24 H 1.48496 * 109.47472 * 329.99958 * 21 19 17 25 25 C 1.34768 * 111.64059 * 359.97438 * 14 12 11 26 26 O 1.21232 * 127.15574 * 179.97438 * 25 14 12 27 27 H 1.09002 * 109.47486 * 59.99925 * 1 2 3 28 28 H 1.08995 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47632 * 300.00115 * 1 2 3 30 30 H 1.08002 * 120.00072 * 359.95623 * 4 3 2 31 31 H 1.08004 * 119.99976 * 180.31492 * 7 5 4 32 32 H 1.08002 * 120.00488 * 179.72250 * 8 7 5 33 33 H 0.97004 * 126.69166 * 61.38887 * 11 2 1 34 34 H 1.09003 * 109.47292 * 29.95836 * 15 14 12 35 35 H 1.09000 * 109.46623 * 149.95655 * 15 14 12 36 36 H 1.09003 * 109.47317 * 300.00241 * 16 15 14 37 37 H 1.08991 * 109.47420 * 60.00259 * 16 15 14 38 38 H 0.97005 * 120.00169 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.8124 1.8669 -1.0650 5 6 3.2975 3.1634 -1.0652 6 9 4.0348 3.6085 -2.1061 7 6 3.0222 4.0057 -0.0013 8 6 2.2735 3.5486 1.0661 9 6 1.7887 2.2515 1.0666 10 9 1.0519 1.8061 2.1077 11 7 2.0514 -0.7487 -1.1564 12 6 2.7645 -1.7757 -0.6601 13 8 3.3357 -2.5975 -1.3499 14 7 2.7740 -1.7921 0.6777 15 6 3.4720 -2.7969 1.4835 16 6 2.5305 -3.9701 1.7632 17 6 3.2483 -5.0034 2.5927 18 1 4.2733 -4.8396 2.8909 19 6 2.5962 -6.1576 2.9717 20 7 3.2227 -7.0596 3.6951 21 14 0.8226 -6.4400 2.4577 22 1 0.7923 -7.1472 1.1523 23 1 0.1353 -7.2647 3.4836 24 1 0.1305 -5.1325 2.3286 25 6 2.0630 -0.7694 1.1923 26 8 1.8859 -0.5176 2.3649 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.0233 1.2113 -1.8969 31 1 3.3964 5.0189 -0.0038 32 1 2.0626 4.2042 1.8980 33 1 1.9082 -0.5418 -2.0933 34 1 4.3468 -3.1545 0.9405 35 1 3.7872 -2.3511 2.4269 36 1 1.6557 -3.6125 2.3063 37 1 2.2153 -4.4159 0.8199 38 1 2.7638 -7.8714 3.9621 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097336283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:33 Heat of formation + Delta-G solvation = -120.984702 kcal Electronic energy + Delta-G solvation = -27863.775382 eV Core-core repulsion = 23535.662226 eV Total energy + Delta-G solvation = -4328.113156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.98322 -49.96780 -43.78166 -40.14642 -39.70673 -37.59396 -36.97577 -35.11277 -33.19423 -32.14845 -31.65972 -30.31558 -27.78621 -26.00717 -24.63827 -23.98890 -23.60057 -22.31629 -21.39288 -19.47147 -19.12067 -18.78781 -18.43039 -18.13937 -17.78426 -17.25959 -16.93344 -16.61871 -16.49523 -16.37708 -16.29630 -15.72429 -15.38111 -15.31232 -15.11049 -15.03516 -14.86439 -14.61729 -14.13384 -13.78429 -13.67467 -13.55982 -13.29404 -13.02807 -12.94483 -12.79174 -12.22357 -12.13059 -12.03176 -11.85909 -11.58265 -11.37062 -10.94981 -10.83998 -10.67482 -10.29754 -9.64300 -8.36195 -6.41936 -0.28410 -0.11935 0.43123 1.07753 1.30340 1.31473 1.42617 1.83870 1.88216 2.23157 2.29623 2.69750 2.78825 2.98298 3.10957 3.24172 3.50257 3.63571 3.86498 3.90234 4.05966 4.25106 4.30688 4.33626 4.43801 4.56663 4.58516 4.61559 4.83361 4.86259 4.90646 4.96753 5.02273 5.12057 5.19837 5.49518 5.64500 5.67387 5.95916 6.14339 6.23778 6.63301 6.97856 7.22625 8.79844 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.003646 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.306731 B = 7677.844983 C = 8112.320543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.179 3.821 3 C -0.114 4.114 4 C -0.107 4.107 5 C 0.082 3.918 6 F -0.136 7.136 7 C -0.102 4.102 8 C -0.116 4.116 9 C 0.099 3.901 10 F -0.128 7.128 11 N -0.696 5.696 12 C 0.703 3.297 13 O -0.568 6.568 14 N -0.579 5.579 15 C 0.139 3.861 16 C -0.013 4.013 17 C -0.534 4.534 18 H 0.045 0.955 19 C 0.015 3.985 20 N -0.941 5.941 21 Si 0.944 3.056 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.255 1.255 25 C 0.518 3.482 26 O -0.471 6.471 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.455 0.545 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.018 0.982 37 H 0.016 0.984 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.787 27.864 -12.080 31.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.087 3.913 3 C -0.117 4.117 4 C -0.126 4.126 5 C 0.063 3.937 6 F -0.115 7.115 7 C -0.120 4.120 8 C -0.135 4.135 9 C 0.079 3.921 10 F -0.106 7.106 11 N -0.362 5.362 12 C 0.403 3.597 13 O -0.443 6.443 14 N -0.324 5.324 15 C 0.018 3.982 16 C -0.051 4.051 17 C -0.572 4.572 18 H 0.064 0.936 19 C -0.184 4.184 20 N -0.580 5.580 21 Si 0.767 3.233 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.179 1.179 25 C 0.305 3.695 26 O -0.340 6.340 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.175 0.825 31 H 0.196 0.804 32 H 0.194 0.806 33 H 0.304 0.696 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.542 27.315 -11.650 30.408 hybrid contribution -0.327 -0.926 -0.166 0.996 sum -6.869 26.389 -11.816 29.718 Atomic orbital electron populations 1.22137 0.86974 1.04829 1.06476 1.20035 0.98588 0.88903 0.83732 1.19221 1.02989 0.93224 0.96218 1.20860 0.97150 0.95280 0.99272 1.17682 0.95985 0.93208 0.86817 1.91539 1.74520 1.89420 1.56015 1.21418 0.97653 1.01819 0.91144 1.21313 0.97931 0.93449 1.00779 1.17785 0.95481 0.93911 0.84973 1.91602 1.73934 1.89579 1.55489 1.45424 1.53958 1.27469 1.09397 1.15971 0.79743 0.82404 0.81537 1.91009 1.49443 1.42325 1.61546 1.46696 1.49028 1.28441 1.08257 1.21581 0.95268 0.86972 0.94354 1.19705 0.95819 0.93525 0.96072 1.21139 0.99861 1.03159 1.33060 0.93647 1.25858 1.02817 0.95336 0.94349 1.70020 1.39414 1.10125 1.38480 0.85754 0.79754 0.79091 0.78681 1.19083 1.20057 1.17925 1.21197 0.77335 0.80574 0.90401 1.90808 1.56358 1.69332 1.17495 0.86491 0.91001 0.89384 0.82541 0.80367 0.80615 0.69556 0.89364 0.89258 0.96369 0.96540 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.80 71.98 0.63 -1.82 16 2 C 0.18 3.85 1.03 2.24 0.00 3.85 16 3 C -0.11 -2.06 4.82 -19.83 -0.10 -2.16 16 4 C -0.11 -1.58 9.35 22.31 0.21 -1.38 16 5 C 0.08 1.12 7.30 22.37 0.16 1.28 16 6 F -0.14 -2.08 17.27 44.97 0.78 -1.30 16 7 C -0.10 -1.00 10.02 22.31 0.22 -0.78 16 8 C -0.12 -1.36 10.02 22.31 0.22 -1.13 16 9 C 0.10 1.79 6.82 22.37 0.15 1.94 16 10 F -0.13 -2.98 13.21 44.97 0.59 -2.38 16 11 N -0.70 -14.42 4.71 -443.27 -2.09 -16.51 16 12 C 0.70 22.67 8.62 179.44 1.55 24.21 16 13 O -0.57 -22.44 17.48 -3.86 -0.07 -22.51 16 14 N -0.58 -20.64 2.60 -773.12 -2.01 -22.65 16 15 C 0.14 5.88 5.64 86.38 0.49 6.37 16 16 C -0.01 -0.65 4.37 29.85 0.13 -0.52 16 17 C -0.53 -31.55 9.66 25.60 0.25 -31.30 16 18 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 19 C 0.01 0.88 5.47 84.66 0.46 1.34 16 20 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 21 Si 0.94 45.63 27.47 68.60 1.88 47.51 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 25 C 0.52 16.62 6.75 87.94 0.59 17.21 16 26 O -0.47 -17.51 15.60 -2.88 -0.04 -17.56 16 27 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.58 6.63 -2.38 -0.02 1.56 16 30 H 0.16 1.95 6.62 -2.91 -0.02 1.93 16 31 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.46 5.97 8.37 -92.70 -0.78 5.19 16 34 H 0.09 3.78 7.86 -2.39 -0.02 3.76 16 35 H 0.09 3.75 8.00 -2.39 -0.02 3.73 16 36 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 37 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 38 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -76.93 332.69 4.62 -72.31 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.30 Total: 5.12 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 4.98 Total: 17.13 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.80 Total: -98.31 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.11 Total: -40.07 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 1.37 Total: -3.68 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -76.93 4.62 -72.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097336283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.678 kcal (2) G-P(sol) polarization free energy of solvation -76.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds