Wall clock time and date at job start Tue Mar 31 2020 13:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 110.53463 * 2 1 4 4 C 1.38228 * 119.98863 * 121.37291 * 3 2 1 5 5 C 1.38186 * 120.05326 * 179.97438 * 4 3 2 6 6 C 1.38496 * 120.02301 * 359.97438 * 5 4 3 7 7 F 1.35096 * 120.01375 * 179.97438 * 6 5 4 8 8 C 1.38406 * 119.97418 * 0.02562 * 6 5 4 9 9 C 1.38435 * 119.94600 * 359.76396 * 8 6 5 10 10 F 1.35105 * 120.01015 * 180.23053 * 9 8 6 11 11 N 1.47318 * 110.60090 * 122.82622 * 2 1 3 12 12 C 1.34529 * 106.61465 * 118.67865 * 11 2 1 13 13 O 1.21546 * 123.76527 * 179.97438 * 12 11 2 14 14 N 1.33786 * 112.45929 * 0.02562 * 12 11 2 15 15 C 1.46506 * 124.17427 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46919 * 90.02715 * 15 14 12 17 17 C 1.50696 * 109.47188 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00332 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99983 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00210 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99914 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99403 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00010 * 21 19 17 25 25 C 1.34764 * 111.64970 * 0.22619 * 14 12 11 26 26 O 1.21225 * 127.15991 * 179.73818 * 25 14 12 27 27 H 1.08992 * 109.46627 * 297.87050 * 1 2 3 28 28 H 1.08994 * 109.46679 * 57.87255 * 1 2 3 29 29 H 1.09001 * 109.46310 * 177.87216 * 1 2 3 30 30 H 1.08006 * 119.97637 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.98872 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.02116 * 179.97438 * 8 6 5 33 33 H 0.96992 * 126.69164 * 298.72335 * 11 2 1 34 34 H 1.08996 * 109.47200 * 330.02911 * 15 14 12 35 35 H 1.08997 * 109.47351 * 210.02319 * 15 14 12 36 36 H 1.09004 * 109.47223 * 59.99467 * 16 15 14 37 37 H 1.09010 * 109.47071 * 299.99819 * 16 15 14 38 38 H 0.97000 * 119.99462 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.8847 1.8396 1.0222 5 6 3.3706 3.1333 1.0232 6 6 3.0308 4.0020 -0.0005 7 9 3.5055 5.2668 0.0010 8 6 2.2038 3.5741 -1.0245 9 6 1.7212 2.2766 -1.0267 10 9 0.9176 1.8563 -2.0281 11 7 2.0484 -0.7475 1.1588 12 6 2.7628 -1.7751 0.6653 13 8 3.3329 -2.5956 1.3576 14 7 2.7766 -1.7923 -0.6723 15 6 3.4769 -2.7979 -1.4753 16 6 2.5361 -3.9711 -1.7570 17 6 3.2566 -5.0058 -2.5823 18 1 4.2827 -4.8428 -2.8769 19 6 2.6053 -6.1602 -2.9623 20 7 1.3555 -6.3585 -2.6041 21 14 3.4982 -7.4425 -3.9860 22 1 3.2988 -7.1508 -5.4284 23 1 4.9487 -7.4063 -3.6696 24 1 2.9568 -8.7896 -3.6740 25 6 2.0714 -0.7672 -1.1900 26 8 1.9033 -0.5127 -2.3633 27 1 -0.3632 0.4804 0.9084 28 1 -0.3632 0.5465 -0.8703 29 1 -0.3632 -1.0270 -0.0382 30 1 3.1506 1.1628 1.8207 31 1 4.0156 3.4670 1.8226 32 1 1.9380 4.2510 -1.8229 33 1 1.9024 -0.5398 2.0949 34 1 4.3499 -3.1553 -0.9292 35 1 3.7952 -2.3530 -2.4180 36 1 1.6630 -3.6136 -2.3030 37 1 2.2178 -4.4161 -0.8141 38 1 0.8921 -5.6928 -2.0722 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097336459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:36 Heat of formation + Delta-G solvation = -106.067027 kcal Electronic energy + Delta-G solvation = -27716.345957 eV Core-core repulsion = 23388.879680 eV Total energy + Delta-G solvation = -4327.466277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.43598 -49.27131 -42.52503 -39.33067 -38.39070 -36.37260 -35.45068 -33.42388 -31.78950 -31.37441 -29.78771 -29.50387 -25.52559 -24.52791 -23.69720 -23.20244 -22.33684 -21.27161 -20.10565 -18.64115 -18.01007 -17.42652 -17.27800 -16.98555 -16.40835 -16.17424 -16.09637 -15.63185 -15.44018 -15.24356 -15.11249 -14.66546 -14.38696 -14.01627 -13.96492 -13.72799 -13.18600 -13.14497 -12.97032 -12.71431 -12.55768 -12.30312 -12.08493 -11.90654 -11.78760 -10.87528 -10.68329 -10.64672 -10.33359 -10.10845 -10.05065 -9.73266 -9.53023 -9.20122 -9.05592 -8.64154 -8.36239 -6.41130 -4.11221 0.37730 0.54308 1.71363 2.35684 2.78263 3.08725 3.21978 3.42095 3.44166 3.48027 3.63522 3.79546 3.88032 3.98144 4.18508 4.35797 4.51111 4.53506 4.75935 5.12874 5.22425 5.28708 5.31748 5.37676 5.41029 5.45894 5.54518 5.64826 5.78382 5.86970 5.98034 6.12856 6.25742 6.45946 6.69900 7.13646 7.24945 7.43692 7.52861 8.05997 8.25997 8.39549 8.80847 9.61502 10.99937 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.003236 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.926492 B = 8649.943411 C = 8945.232586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.168 3.832 3 C -0.142 4.142 4 C -0.043 4.043 5 C -0.164 4.164 6 C 0.137 3.863 7 F -0.129 7.129 8 C -0.192 4.192 9 C 0.160 3.840 10 F -0.108 7.108 11 N -0.726 5.726 12 C 0.703 3.297 13 O -0.532 6.532 14 N -0.567 5.567 15 C 0.127 3.873 16 C -0.001 4.001 17 C -0.603 4.603 18 H 0.054 0.946 19 C 0.018 3.982 20 N -0.908 5.908 21 Si 1.075 2.925 22 H -0.287 1.287 23 H -0.287 1.287 24 H -0.284 1.284 25 C 0.528 3.472 26 O -0.448 6.448 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.436 0.564 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 22.820 9.205 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.076 3.924 3 C -0.144 4.144 4 C -0.061 4.061 5 C -0.183 4.183 6 C 0.118 3.882 7 F -0.108 7.108 8 C -0.212 4.212 9 C 0.140 3.860 10 F -0.086 7.086 11 N -0.392 5.392 12 C 0.404 3.596 13 O -0.404 6.404 14 N -0.313 5.313 15 C 0.008 3.992 16 C -0.038 4.038 17 C -0.641 4.641 18 H 0.072 0.928 19 C -0.186 4.186 20 N -0.544 5.544 21 Si 0.903 3.097 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.209 1.209 25 C 0.312 3.688 26 O -0.315 6.315 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.281 0.719 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.050 20.951 8.063 22.449 hybrid contribution 0.024 1.835 0.999 2.089 sum -0.026 22.785 9.062 24.521 Atomic orbital electron populations 1.22088 0.89162 1.04878 1.04675 1.20036 0.97265 0.88834 0.86280 1.19679 1.03094 0.94447 0.97213 1.20740 0.93227 0.95002 0.97138 1.21185 1.03709 0.93696 0.99694 1.17357 0.95536 0.79908 0.95424 1.91548 1.86285 1.36637 1.96302 1.21048 1.02369 0.96196 1.01599 1.17013 0.91610 0.91662 0.85757 1.91630 1.69434 1.89895 1.57678 1.45621 1.55822 1.29360 1.08366 1.15910 0.79593 0.81802 0.82256 1.91024 1.47859 1.40672 1.60880 1.46742 1.48720 1.28222 1.07572 1.22089 0.96200 0.87493 0.93432 1.19540 0.95043 0.92162 0.97086 1.21848 1.00442 1.05127 1.36706 0.92790 1.25893 0.96259 0.98893 0.97601 1.70752 1.10630 1.37712 1.35299 0.83461 0.74742 0.75723 0.75790 1.21343 1.21319 1.20923 1.20435 0.78090 0.80819 0.89419 1.90817 1.55850 1.68883 1.15980 0.90130 0.89201 0.90251 0.83520 0.83522 0.82846 0.71903 0.89367 0.89633 0.96924 0.96636 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.80 37.16 0.33 -1.21 16 2 C 0.17 2.02 1.03 -133.24 -0.14 1.88 16 3 C -0.14 -1.46 4.82 -104.55 -0.50 -1.96 16 4 C -0.04 -0.34 9.37 -39.60 -0.37 -0.71 16 5 C -0.16 -1.19 10.03 -39.51 -0.40 -1.59 16 6 C 0.14 1.16 7.30 -39.42 -0.29 0.87 16 7 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 8 C -0.19 -1.72 10.01 -39.45 -0.39 -2.12 16 9 C 0.16 1.72 6.81 -39.43 -0.27 1.45 16 10 F -0.11 -1.38 13.31 2.25 0.03 -1.35 16 11 N -0.73 -8.35 4.60 -54.01 -0.25 -8.60 16 12 C 0.70 11.92 8.62 -88.02 -0.76 11.16 16 13 O -0.53 -10.82 17.48 5.32 0.09 -10.73 16 14 N -0.57 -10.51 2.60 -120.73 -0.31 -10.83 16 15 C 0.13 2.73 5.64 -4.04 -0.02 2.71 16 16 C 0.00 -0.01 4.61 -27.89 -0.13 -0.14 16 17 C -0.60 -17.32 9.11 -34.44 -0.31 -17.64 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 20 N -0.91 -28.23 13.65 55.43 0.76 -27.47 16 21 Si 1.08 25.55 29.90 -169.99 -5.08 20.47 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.53 8.95 6.80 -10.55 -0.07 8.88 16 26 O -0.45 -8.69 15.98 5.61 0.09 -8.60 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.95 6.26 -51.93 -0.33 0.63 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.15 0.94 6.69 -52.48 -0.35 0.59 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.44 3.44 8.52 -40.82 -0.35 3.09 16 34 H 0.09 1.88 7.86 -51.93 -0.41 1.48 16 35 H 0.09 1.80 8.00 -51.93 -0.42 1.39 16 36 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 37 H 0.02 0.43 8.01 -51.92 -0.42 0.02 16 38 H 0.27 8.36 7.22 -40.82 -0.29 8.07 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -34.84 335.22 -6.88 -41.71 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.87 Total: -0.57 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -3.42 Total: 2.00 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.19 Total: -46.90 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.18 Total: -19.33 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.07 Total: -2.44 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.84 -6.88 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097336459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.353 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds