Wall clock time and date at job start Tue Mar 31 2020 13:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 110.53463 * 2 1 4 4 C 1.38228 * 119.98863 * 121.37291 * 3 2 1 5 5 C 1.38186 * 120.05326 * 179.97438 * 4 3 2 6 6 C 1.38496 * 120.02301 * 359.97438 * 5 4 3 7 7 F 1.35096 * 120.01375 * 179.97438 * 6 5 4 8 8 C 1.38406 * 119.97418 * 0.02562 * 6 5 4 9 9 C 1.38435 * 119.94600 * 359.76396 * 8 6 5 10 10 F 1.35105 * 120.01015 * 180.23053 * 9 8 6 11 11 N 1.47318 * 110.60090 * 122.82622 * 2 1 3 12 12 C 1.34529 * 106.61465 * 118.67865 * 11 2 1 13 13 O 1.21546 * 123.76527 * 179.97438 * 12 11 2 14 14 N 1.33786 * 112.45929 * 0.02562 * 12 11 2 15 15 C 1.46506 * 124.17427 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46919 * 90.02715 * 15 14 12 17 17 C 1.50696 * 109.47188 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00332 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99983 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00210 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99914 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99403 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00010 * 21 19 17 25 25 C 1.34764 * 111.64970 * 0.22619 * 14 12 11 26 26 O 1.21225 * 127.15991 * 179.73818 * 25 14 12 27 27 H 1.08992 * 109.46627 * 297.87050 * 1 2 3 28 28 H 1.08994 * 109.46679 * 57.87255 * 1 2 3 29 29 H 1.09001 * 109.46310 * 177.87216 * 1 2 3 30 30 H 1.08006 * 119.97637 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.98872 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.02116 * 179.97438 * 8 6 5 33 33 H 0.96992 * 126.69164 * 298.72335 * 11 2 1 34 34 H 1.08996 * 109.47200 * 330.02911 * 15 14 12 35 35 H 1.08997 * 109.47351 * 210.02319 * 15 14 12 36 36 H 1.09004 * 109.47223 * 59.99467 * 16 15 14 37 37 H 1.09010 * 109.47071 * 299.99819 * 16 15 14 38 38 H 0.97000 * 119.99462 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.8847 1.8396 1.0222 5 6 3.3706 3.1333 1.0232 6 6 3.0308 4.0020 -0.0005 7 9 3.5055 5.2668 0.0010 8 6 2.2038 3.5741 -1.0245 9 6 1.7212 2.2766 -1.0267 10 9 0.9176 1.8563 -2.0281 11 7 2.0484 -0.7475 1.1588 12 6 2.7628 -1.7751 0.6653 13 8 3.3329 -2.5956 1.3576 14 7 2.7766 -1.7923 -0.6723 15 6 3.4769 -2.7979 -1.4753 16 6 2.5361 -3.9711 -1.7570 17 6 3.2566 -5.0058 -2.5823 18 1 4.2827 -4.8428 -2.8769 19 6 2.6053 -6.1602 -2.9623 20 7 1.3555 -6.3585 -2.6041 21 14 3.4982 -7.4425 -3.9860 22 1 3.2988 -7.1508 -5.4284 23 1 4.9487 -7.4063 -3.6696 24 1 2.9568 -8.7896 -3.6740 25 6 2.0714 -0.7672 -1.1900 26 8 1.9033 -0.5127 -2.3633 27 1 -0.3632 0.4804 0.9084 28 1 -0.3632 0.5465 -0.8703 29 1 -0.3632 -1.0270 -0.0382 30 1 3.1506 1.1628 1.8207 31 1 4.0156 3.4670 1.8226 32 1 1.9380 4.2510 -1.8229 33 1 1.9024 -0.5398 2.0949 34 1 4.3499 -3.1553 -0.9292 35 1 3.7952 -2.3530 -2.4180 36 1 1.6630 -3.6136 -2.3030 37 1 2.2178 -4.4161 -0.8141 38 1 0.8921 -5.6928 -2.0722 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097336459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:35 Heat of formation + Delta-G solvation = -128.752633 kcal Electronic energy + Delta-G solvation = -27717.329678 eV Core-core repulsion = 23388.879680 eV Total energy + Delta-G solvation = -4328.449999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.13269 -50.09993 -43.81743 -40.19263 -39.75814 -37.60828 -37.08915 -35.40617 -32.90960 -32.08960 -31.59258 -30.30334 -27.23503 -25.89499 -24.58335 -24.29993 -24.04370 -22.43972 -21.49146 -19.46269 -19.24971 -19.04141 -18.34485 -18.18938 -17.73779 -17.10720 -16.95504 -16.74373 -16.54192 -16.39655 -16.29839 -15.66264 -15.52653 -15.38508 -15.15501 -15.12797 -14.92776 -14.66783 -14.10711 -13.84797 -13.72628 -13.62845 -13.05397 -12.83311 -12.78631 -12.64498 -12.54804 -12.23066 -12.08528 -11.91686 -11.44893 -11.07130 -10.88152 -10.63003 -10.61377 -10.21809 -9.82766 -8.77458 -6.48941 -0.35887 -0.12120 0.38910 1.04883 1.52469 1.62216 1.79556 1.81107 1.84711 2.18726 2.54456 2.65527 2.77531 2.92767 3.09874 3.27957 3.44543 3.55870 3.81408 3.84105 4.06357 4.22589 4.25160 4.31053 4.43166 4.51168 4.54202 4.61539 4.66556 4.77806 4.90705 4.94992 5.00056 5.08370 5.14271 5.58439 5.65539 5.81547 5.93143 6.07146 6.20014 6.43968 6.95573 7.34338 8.63501 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.003236 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.926492 B = 8649.943411 C = 8945.232586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.183 3.817 3 C -0.152 4.152 4 C -0.036 4.036 5 C -0.149 4.149 6 C 0.136 3.864 7 F -0.130 7.130 8 C -0.192 4.192 9 C 0.140 3.860 10 F -0.127 7.127 11 N -0.691 5.691 12 C 0.702 3.298 13 O -0.569 6.569 14 N -0.580 5.580 15 C 0.141 3.859 16 C 0.009 3.991 17 C -0.620 4.620 18 H 0.063 0.937 19 C -0.037 4.037 20 N -0.933 5.933 21 Si 1.125 2.875 22 H -0.271 1.271 23 H -0.264 1.264 24 H -0.282 1.282 25 C 0.517 3.483 26 O -0.479 6.479 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.167 0.833 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.458 0.542 34 H 0.090 0.910 35 H 0.088 0.912 36 H -0.013 1.013 37 H -0.011 1.011 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 24.455 10.410 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.092 3.908 3 C -0.154 4.154 4 C -0.054 4.054 5 C -0.168 4.168 6 C 0.117 3.883 7 F -0.109 7.109 8 C -0.211 4.211 9 C 0.120 3.880 10 F -0.105 7.105 11 N -0.358 5.358 12 C 0.403 3.597 13 O -0.444 6.444 14 N -0.324 5.324 15 C 0.020 3.980 16 C -0.029 4.029 17 C -0.658 4.658 18 H 0.081 0.919 19 C -0.235 4.235 20 N -0.569 5.569 21 Si 0.945 3.055 22 H -0.196 1.196 23 H -0.189 1.189 24 H -0.207 1.207 25 C 0.304 3.696 26 O -0.348 6.348 27 H 0.139 0.861 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.185 0.815 31 H 0.194 0.806 32 H 0.182 0.818 33 H 0.307 0.693 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.005 0.995 37 H 0.007 0.993 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.960 22.668 9.318 24.528 hybrid contribution -0.309 1.451 0.644 1.618 sum 0.652 24.120 9.962 26.104 Atomic orbital electron populations 1.22159 0.87507 1.04414 1.06611 1.19952 0.98210 0.89162 0.83485 1.19563 1.04535 0.92905 0.98402 1.20947 0.92042 0.95669 0.96739 1.21487 1.02804 0.92830 0.99648 1.17479 0.95287 0.80028 0.95546 1.91553 1.86234 1.36776 1.96301 1.21156 1.02106 0.95664 1.02178 1.17220 0.92437 0.92549 0.85802 1.91587 1.70141 1.90183 1.58568 1.45377 1.53789 1.27299 1.09374 1.15975 0.79819 0.82413 0.81452 1.91001 1.49715 1.42370 1.61363 1.46710 1.49163 1.28177 1.08399 1.21602 0.95175 0.86861 0.94326 1.19347 0.94938 0.93582 0.95012 1.22307 1.01050 1.05792 1.36633 0.91898 1.27595 0.96185 1.01516 0.98175 1.70895 1.11878 1.37593 1.36563 0.82852 0.74740 0.72965 0.74939 1.19600 1.18859 1.20735 1.21318 0.77257 0.80561 0.90479 1.90788 1.56717 1.69595 1.17738 0.86148 0.89550 0.91694 0.81534 0.80571 0.81784 0.69301 0.89160 0.89333 0.99478 0.99294 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.80 71.98 0.63 -2.23 16 2 C 0.18 4.19 1.03 2.24 0.00 4.19 16 3 C -0.15 -2.81 4.82 -19.82 -0.10 -2.91 16 4 C -0.04 -0.45 9.37 22.26 0.21 -0.24 16 5 C -0.15 -1.59 10.03 22.32 0.22 -1.37 16 6 C 0.14 1.91 7.30 22.37 0.16 2.07 16 7 F -0.13 -1.94 17.27 44.97 0.78 -1.16 16 8 C -0.19 -3.09 10.01 22.36 0.22 -2.87 16 9 C 0.14 2.84 6.81 22.37 0.15 3.00 16 10 F -0.13 -3.23 13.31 44.97 0.60 -2.63 16 11 N -0.69 -14.61 4.60 -443.22 -2.04 -16.65 16 12 C 0.70 23.55 8.62 179.44 1.55 25.10 16 13 O -0.57 -23.17 17.48 -3.86 -0.07 -23.24 16 14 N -0.58 -21.84 2.60 -773.13 -2.01 -23.85 16 15 C 0.14 6.26 5.64 86.38 0.49 6.75 16 16 C 0.01 0.50 4.61 29.85 0.14 0.64 16 17 C -0.62 -36.33 9.11 25.60 0.23 -36.10 16 18 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 19 C -0.04 -2.21 5.46 84.65 0.46 -1.75 16 20 N -0.93 -59.53 13.65 21.45 0.29 -59.24 16 21 Si 1.13 51.04 29.90 68.60 2.05 53.09 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 C 0.52 17.75 6.80 87.94 0.60 18.35 16 26 O -0.48 -19.20 15.98 -2.86 -0.05 -19.25 16 27 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 1.79 6.26 -2.39 -0.01 1.77 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.17 1.41 6.69 -2.91 -0.02 1.39 16 31 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.46 5.77 8.52 -92.71 -0.79 4.98 16 34 H 0.09 3.94 7.86 -2.39 -0.02 3.92 16 35 H 0.09 3.83 8.00 -2.39 -0.02 3.81 16 36 H -0.01 -0.77 8.01 -2.38 -0.02 -0.79 16 37 H -0.01 -0.67 8.01 -2.38 -0.02 -0.69 16 38 H 0.25 16.48 7.22 -92.71 -0.67 15.81 16 Total: -1.00 -78.77 335.22 4.97 -73.79 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.44 Total: 6.51 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 4.98 Total: 12.63 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -3.76 Total: -99.74 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.11 Total: -42.48 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 1.38 Total: -3.79 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -78.77 4.97 -73.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097336459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.958 kcal (2) G-P(sol) polarization free energy of solvation -78.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds