Wall clock time and date at job start Tue Mar 31 2020 13:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 110.53497 * 2 1 4 4 C 1.38241 * 119.98631 * 243.08676 * 3 2 1 5 5 C 1.38183 * 120.04774 * 180.30156 * 4 3 2 6 6 C 1.38497 * 120.02410 * 359.44115 * 5 4 3 7 7 F 1.35100 * 120.01140 * 180.29917 * 6 5 4 8 8 C 1.38395 * 119.97902 * 0.28095 * 6 5 4 9 9 C 1.38442 * 119.94726 * 0.02562 * 8 6 5 10 10 F 1.35097 * 120.01331 * 179.97438 * 9 8 6 11 11 N 1.47312 * 110.72800 * 237.07993 * 2 1 3 12 12 C 1.34529 * 106.61918 * 241.40572 * 11 2 1 13 13 O 1.21545 * 123.77167 * 180.02562 * 12 11 2 14 14 N 1.33786 * 112.45679 * 0.02562 * 12 11 2 15 15 C 1.46500 * 124.17603 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47617 * 269.95985 * 15 14 12 17 17 C 1.50693 * 109.47377 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00223 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00136 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 119.99995 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47370 * 60.00292 * 21 19 17 23 23 H 1.48501 * 109.47000 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47501 * 299.99739 * 21 19 17 25 25 C 1.34765 * 111.64560 * 0.02562 * 14 12 11 26 26 O 1.21237 * 127.15463 * 180.02562 * 25 14 12 27 27 H 1.08995 * 109.47475 * 59.99818 * 1 2 3 28 28 H 1.09003 * 109.47163 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46902 * 299.99908 * 1 2 3 30 30 H 1.07995 * 119.97412 * 0.03807 * 4 3 2 31 31 H 1.08002 * 119.98955 * 179.72641 * 5 4 3 32 32 H 1.08001 * 120.02876 * 179.97438 * 8 6 5 33 33 H 0.97000 * 126.69075 * 61.38980 * 11 2 1 34 34 H 1.08999 * 109.47511 * 29.96315 * 15 14 12 35 35 H 1.09005 * 109.47194 * 149.95796 * 15 14 12 36 36 H 1.08999 * 109.46949 * 300.00674 * 16 15 14 37 37 H 1.09008 * 109.46520 * 59.99805 * 16 15 14 38 38 H 0.96992 * 119.99745 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4112 0.0000 4 6 2.8085 1.8681 -1.0677 5 6 3.2991 3.1599 -1.0662 6 6 3.0302 4.0021 0.0000 7 9 3.5049 5.2669 -0.0016 8 6 2.2747 3.5476 1.0668 9 6 1.7891 2.2512 1.0671 10 9 1.0519 1.8060 2.1080 11 7 2.0514 -0.7488 -1.1565 12 6 2.7646 -1.7758 -0.6602 13 8 3.3365 -2.5971 -1.3500 14 7 2.7740 -1.7921 0.6775 15 6 3.4720 -2.7970 1.4834 16 6 2.5307 -3.9703 1.7631 17 6 3.2485 -5.0035 2.5925 18 1 4.2738 -4.8400 2.8901 19 6 2.5968 -6.1582 2.9707 20 7 1.3488 -6.3581 2.6072 21 14 3.4868 -7.4393 3.9982 22 1 3.9157 -6.8321 5.2837 23 1 2.5735 -8.5786 4.2688 24 1 4.6789 -7.9261 3.2586 25 6 2.0622 -0.7701 1.1922 26 8 1.8856 -0.5181 2.3649 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 3.0146 1.2136 -1.9016 31 1 3.8886 3.5145 -1.8988 32 1 2.0649 4.2035 1.8987 33 1 1.9081 -0.5418 -2.0933 34 1 4.3469 -3.1545 0.9404 35 1 3.7873 -2.3511 2.4268 36 1 1.6559 -3.6127 2.3061 37 1 2.2155 -4.4160 0.8196 38 1 0.8902 -7.1702 2.8735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097336460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:39 Heat of formation + Delta-G solvation = -102.198951 kcal Electronic energy + Delta-G solvation = -27681.183346 eV Core-core repulsion = 23353.884801 eV Total energy + Delta-G solvation = -4327.298545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.39766 -49.18204 -42.43098 -39.27704 -38.29521 -36.28129 -35.30848 -33.12654 -31.72952 -31.32955 -29.94476 -29.44420 -25.75550 -24.63428 -23.66097 -23.14866 -22.19205 -21.11660 -19.93212 -18.58731 -17.93611 -17.35017 -17.16236 -16.75721 -16.33906 -16.07592 -15.96987 -15.54949 -15.34965 -15.16719 -14.84081 -14.58873 -14.47190 -14.27811 -13.93337 -13.85760 -13.11560 -12.98976 -12.87736 -12.65063 -12.36938 -12.25361 -12.01943 -11.77399 -11.55902 -10.95196 -10.90283 -10.57268 -10.21236 -10.11307 -9.92992 -9.65165 -9.48643 -9.28784 -8.99374 -8.92921 -8.39501 -6.04618 -4.08556 0.42716 0.58859 1.80639 2.44473 2.83167 3.17321 3.31811 3.33839 3.37580 3.40507 3.47006 3.86276 3.94247 4.03189 4.23894 4.41246 4.44197 4.57419 4.80770 5.19492 5.29251 5.32027 5.34936 5.36297 5.47334 5.51512 5.59178 5.69897 5.85216 5.98089 6.09050 6.27617 6.30574 6.62282 6.77669 7.28613 7.55119 7.62887 7.68614 7.91624 8.25270 8.36668 8.96127 9.55505 11.07065 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022128 B = 0.003233 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.038247 B = 8657.755606 C = 8974.736598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.167 3.833 3 C -0.141 4.141 4 C -0.042 4.042 5 C -0.165 4.165 6 C 0.136 3.864 7 F -0.130 7.130 8 C -0.193 4.193 9 C 0.159 3.841 10 F -0.106 7.106 11 N -0.727 5.727 12 C 0.704 3.296 13 O -0.532 6.532 14 N -0.565 5.565 15 C 0.119 3.881 16 C 0.013 3.987 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.528 3.472 26 O -0.447 6.447 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.435 0.565 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 22.415 -9.191 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.075 3.925 3 C -0.143 4.143 4 C -0.061 4.061 5 C -0.184 4.184 6 C 0.117 3.883 7 F -0.108 7.108 8 C -0.213 4.213 9 C 0.139 3.861 10 F -0.084 7.084 11 N -0.392 5.392 12 C 0.405 3.595 13 O -0.405 6.405 14 N -0.310 5.310 15 C 0.000 4.000 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C 0.312 3.688 26 O -0.315 6.315 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.280 0.720 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.520 21.887 -8.755 23.579 hybrid contribution 0.244 -0.483 0.312 0.625 sum -0.276 21.405 -8.443 23.011 Atomic orbital electron populations 1.22065 0.89206 1.04866 1.04517 1.20023 0.97241 0.88767 0.86443 1.19690 1.03776 0.94626 0.96223 1.20714 0.93424 0.94713 0.97212 1.21174 1.03897 0.94041 0.99238 1.17355 0.95970 0.79922 0.95073 1.91546 1.86121 1.36623 1.96551 1.21051 1.03058 0.96118 1.01042 1.17046 0.92718 0.91533 0.84845 1.91659 1.73062 1.89001 1.54703 1.45611 1.55888 1.29438 1.08305 1.15899 0.79561 0.81737 0.82280 1.91019 1.47803 1.40580 1.61081 1.46709 1.48431 1.28371 1.07524 1.22255 0.96540 0.87983 0.93202 1.19407 0.94567 0.90875 0.97638 1.20952 0.98891 1.03037 1.33320 0.92262 1.24991 0.94896 0.98192 0.96092 1.69958 1.10575 1.26873 1.45624 0.86558 0.79458 0.80774 0.80649 1.20085 1.21230 1.20081 1.20410 0.78105 0.80877 0.89398 1.90822 1.55714 1.68909 1.16034 0.90245 0.90111 0.89390 0.83572 0.83574 0.82898 0.72000 0.89548 0.89815 0.96005 0.95745 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.80 37.16 0.33 -1.22 16 2 C 0.17 2.03 1.03 -133.25 -0.14 1.90 16 3 C -0.14 -1.46 4.83 -104.54 -0.50 -1.96 16 4 C -0.04 -0.34 9.37 -39.60 -0.37 -0.71 16 5 C -0.16 -1.20 10.02 -39.51 -0.40 -1.60 16 6 C 0.14 1.16 7.30 -39.43 -0.29 0.87 16 7 F -0.13 -1.16 17.27 2.25 0.04 -1.12 16 8 C -0.19 -1.76 10.01 -39.45 -0.39 -2.15 16 9 C 0.16 1.74 6.82 -39.43 -0.27 1.47 16 10 F -0.11 -1.39 13.21 2.25 0.03 -1.36 16 11 N -0.73 -8.47 4.71 -54.02 -0.25 -8.72 16 12 C 0.70 12.03 8.62 -88.02 -0.76 11.27 16 13 O -0.53 -10.88 17.48 5.33 0.09 -10.79 16 14 N -0.57 -10.53 2.60 -120.73 -0.31 -10.84 16 15 C 0.12 2.55 5.64 -4.04 -0.02 2.52 16 16 C 0.01 0.34 5.30 -27.89 -0.15 0.19 16 17 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.53 9.00 6.75 -10.56 -0.07 8.93 16 26 O -0.45 -8.70 15.60 5.59 0.09 -8.61 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.94 6.63 -51.93 -0.34 0.60 16 30 H 0.15 0.90 6.62 -52.49 -0.35 0.55 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.44 3.48 8.36 -40.82 -0.34 3.14 16 34 H 0.09 1.82 7.86 -51.93 -0.41 1.41 16 35 H 0.08 1.74 8.00 -51.93 -0.42 1.32 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.02 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -34.16 336.28 -6.92 -41.07 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -3.93 Total: -1.18 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -3.45 Total: 6.00 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.17 Total: -45.81 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.18 Total: -19.40 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.07 Total: -2.48 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.16 -6.92 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097336460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.125 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds