Wall clock time and date at job start Tue Mar 31 2020 13:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 110.53497 * 2 1 4 4 C 1.38241 * 119.98631 * 243.08676 * 3 2 1 5 5 C 1.38183 * 120.04774 * 180.30156 * 4 3 2 6 6 C 1.38497 * 120.02410 * 359.44115 * 5 4 3 7 7 F 1.35100 * 120.01140 * 180.29917 * 6 5 4 8 8 C 1.38395 * 119.97902 * 0.28095 * 6 5 4 9 9 C 1.38442 * 119.94726 * 0.02562 * 8 6 5 10 10 F 1.35097 * 120.01331 * 179.97438 * 9 8 6 11 11 N 1.47312 * 110.72800 * 237.07993 * 2 1 3 12 12 C 1.34529 * 106.61918 * 241.40572 * 11 2 1 13 13 O 1.21545 * 123.77167 * 180.02562 * 12 11 2 14 14 N 1.33786 * 112.45679 * 0.02562 * 12 11 2 15 15 C 1.46500 * 124.17603 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47617 * 269.95985 * 15 14 12 17 17 C 1.50693 * 109.47377 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00223 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00136 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 119.99995 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47370 * 60.00292 * 21 19 17 23 23 H 1.48501 * 109.47000 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47501 * 299.99739 * 21 19 17 25 25 C 1.34765 * 111.64560 * 0.02562 * 14 12 11 26 26 O 1.21237 * 127.15463 * 180.02562 * 25 14 12 27 27 H 1.08995 * 109.47475 * 59.99818 * 1 2 3 28 28 H 1.09003 * 109.47163 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46902 * 299.99908 * 1 2 3 30 30 H 1.07995 * 119.97412 * 0.03807 * 4 3 2 31 31 H 1.08002 * 119.98955 * 179.72641 * 5 4 3 32 32 H 1.08001 * 120.02876 * 179.97438 * 8 6 5 33 33 H 0.97000 * 126.69075 * 61.38980 * 11 2 1 34 34 H 1.08999 * 109.47511 * 29.96315 * 15 14 12 35 35 H 1.09005 * 109.47194 * 149.95796 * 15 14 12 36 36 H 1.08999 * 109.46949 * 300.00674 * 16 15 14 37 37 H 1.09008 * 109.46520 * 59.99805 * 16 15 14 38 38 H 0.96992 * 119.99745 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4112 0.0000 4 6 2.8085 1.8681 -1.0677 5 6 3.2991 3.1599 -1.0662 6 6 3.0302 4.0021 0.0000 7 9 3.5049 5.2669 -0.0016 8 6 2.2747 3.5476 1.0668 9 6 1.7891 2.2512 1.0671 10 9 1.0519 1.8060 2.1080 11 7 2.0514 -0.7488 -1.1565 12 6 2.7646 -1.7758 -0.6602 13 8 3.3365 -2.5971 -1.3500 14 7 2.7740 -1.7921 0.6775 15 6 3.4720 -2.7970 1.4834 16 6 2.5307 -3.9703 1.7631 17 6 3.2485 -5.0035 2.5925 18 1 4.2738 -4.8400 2.8901 19 6 2.5968 -6.1582 2.9707 20 7 1.3488 -6.3581 2.6072 21 14 3.4868 -7.4393 3.9982 22 1 3.9157 -6.8321 5.2837 23 1 2.5735 -8.5786 4.2688 24 1 4.6789 -7.9261 3.2586 25 6 2.0622 -0.7701 1.1922 26 8 1.8856 -0.5181 2.3649 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 3.0146 1.2136 -1.9016 31 1 3.8886 3.5145 -1.8988 32 1 2.0649 4.2035 1.8987 33 1 1.9081 -0.5418 -2.0933 34 1 4.3469 -3.1545 0.9404 35 1 3.7873 -2.3511 2.4268 36 1 1.6559 -3.6127 2.3061 37 1 2.2155 -4.4160 0.8196 38 1 0.8902 -7.1702 2.8735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097336460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:38 Heat of formation + Delta-G solvation = -124.375474 kcal Electronic energy + Delta-G solvation = -27682.144992 eV Core-core repulsion = 23353.884801 eV Total energy + Delta-G solvation = -4328.260191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.07698 -50.05351 -43.72621 -40.13618 -39.67317 -37.52004 -36.89995 -35.11828 -32.89512 -32.07294 -31.70515 -30.25356 -27.55848 -25.88160 -24.52863 -24.19759 -23.85888 -22.30561 -21.36146 -19.41626 -19.13062 -18.66544 -18.30661 -18.12611 -17.63999 -17.03809 -16.89598 -16.59735 -16.51852 -16.40366 -16.32156 -16.11428 -15.44459 -15.28231 -15.09354 -14.93035 -14.87923 -14.38702 -13.94489 -13.69704 -13.67266 -13.51530 -13.02671 -12.86513 -12.80987 -12.74134 -12.50376 -12.13522 -12.10916 -11.97263 -11.47586 -11.30358 -10.86876 -10.61726 -10.57812 -10.17899 -9.78181 -8.25882 -6.39037 -0.31205 -0.08200 0.47626 1.13682 1.40551 1.44490 1.52141 1.90037 1.91944 2.24465 2.39623 2.70769 2.82322 2.99051 3.08394 3.32265 3.50937 3.60863 3.87650 3.92921 4.10520 4.36755 4.37718 4.45494 4.49672 4.59853 4.66231 4.69054 4.71301 4.82522 4.94588 4.99864 5.04851 5.33800 5.39750 5.62409 5.70436 5.73288 6.02585 6.06456 6.29420 6.74545 7.04185 7.30746 8.86777 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022128 B = 0.003233 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.038247 B = 8657.755606 C = 8974.736598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.183 3.817 3 C -0.150 4.150 4 C -0.034 4.034 5 C -0.149 4.149 6 C 0.135 3.865 7 F -0.131 7.131 8 C -0.193 4.193 9 C 0.138 3.862 10 F -0.126 7.126 11 N -0.692 5.692 12 C 0.703 3.297 13 O -0.569 6.569 14 N -0.579 5.579 15 C 0.134 3.866 16 C 0.025 3.975 17 C -0.547 4.547 18 H 0.071 0.929 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.264 1.264 25 C 0.516 3.484 26 O -0.478 6.478 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.457 0.543 34 H 0.090 0.910 35 H 0.088 0.912 36 H -0.010 1.010 37 H -0.008 1.008 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 23.900 -10.445 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.091 3.909 3 C -0.153 4.153 4 C -0.052 4.052 5 C -0.168 4.168 6 C 0.115 3.885 7 F -0.109 7.109 8 C -0.212 4.212 9 C 0.118 3.882 10 F -0.104 7.104 11 N -0.360 5.360 12 C 0.404 3.596 13 O -0.445 6.445 14 N -0.323 5.323 15 C 0.013 3.987 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.089 0.911 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.188 1.188 25 C 0.303 3.697 26 O -0.347 6.347 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.187 0.813 31 H 0.194 0.806 32 H 0.181 0.819 33 H 0.306 0.694 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.469 23.440 -10.052 25.509 hybrid contribution -0.094 -0.838 0.686 1.087 sum 0.375 22.602 -9.367 24.469 Atomic orbital electron populations 1.22131 0.87582 1.04450 1.06360 1.19935 0.98178 0.89117 0.83640 1.19575 1.05249 0.93077 0.97360 1.20943 0.92136 0.95317 0.96844 1.21487 1.02761 0.93199 0.99339 1.17482 0.95716 0.80032 0.95233 1.91551 1.86074 1.36767 1.96553 1.21149 1.02774 0.95557 1.01738 1.17264 0.93713 0.92453 0.84799 1.91611 1.73771 1.89330 1.55715 1.45364 1.53875 1.27403 1.09322 1.15971 0.79787 0.82348 0.81508 1.90994 1.49656 1.42273 1.61569 1.46699 1.48899 1.28366 1.08355 1.21770 0.95498 0.87240 0.94174 1.19164 0.94374 0.92439 0.95267 1.21441 0.99658 1.03811 1.33636 0.91070 1.26035 0.95676 1.00672 0.97309 1.70103 1.12359 1.27721 1.46918 0.85374 0.78317 0.77587 0.79028 1.18868 1.20768 1.18844 1.21292 0.77283 0.80650 0.90477 1.90793 1.56557 1.69613 1.17785 0.86191 0.91610 0.89814 0.81341 0.80550 0.81936 0.69383 0.89156 0.89347 0.99178 0.99012 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.80 71.98 0.63 -2.25 16 2 C 0.18 4.24 1.03 2.24 0.00 4.24 16 3 C -0.15 -2.82 4.83 -19.81 -0.10 -2.91 16 4 C -0.03 -0.42 9.37 22.26 0.21 -0.22 16 5 C -0.15 -1.59 10.02 22.32 0.22 -1.37 16 6 C 0.13 1.92 7.30 22.37 0.16 2.09 16 7 F -0.13 -1.99 17.27 44.97 0.78 -1.21 16 8 C -0.19 -3.20 10.01 22.36 0.22 -2.98 16 9 C 0.14 2.87 6.82 22.37 0.15 3.02 16 10 F -0.13 -3.34 13.21 44.97 0.59 -2.75 16 11 N -0.69 -14.89 4.71 -443.25 -2.09 -16.98 16 12 C 0.70 23.87 8.62 179.44 1.55 25.41 16 13 O -0.57 -23.38 17.48 -3.86 -0.07 -23.45 16 14 N -0.58 -22.02 2.60 -773.12 -2.01 -24.03 16 15 C 0.13 5.92 5.64 86.38 0.49 6.41 16 16 C 0.03 1.41 5.30 29.85 0.16 1.57 16 17 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 18 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 19 C 0.00 0.09 5.46 84.66 0.46 0.55 16 20 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 21 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.52 17.92 6.75 87.94 0.59 18.52 16 26 O -0.48 -19.31 15.60 -2.90 -0.05 -19.36 16 27 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.77 6.63 -2.38 -0.02 1.76 16 30 H 0.17 1.31 6.62 -2.91 -0.02 1.29 16 31 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 32 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.46 5.86 8.36 -92.71 -0.78 5.09 16 34 H 0.09 3.90 7.86 -2.39 -0.02 3.88 16 35 H 0.09 3.79 8.00 -2.38 -0.02 3.77 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -77.57 336.28 4.82 -72.76 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.35 Total: 5.29 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 4.99 Total: 20.53 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -3.82 Total: -98.66 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.11 Total: -42.80 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 1.37 Total: -3.96 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -77.57 4.82 -72.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097336460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.617 kcal (2) G-P(sol) polarization free energy of solvation -77.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds