Wall clock time and date at job start Tue Mar 31 2020 13:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 110.53320 * 2 1 4 4 C 1.38204 * 119.97617 * 88.35113 * 3 2 1 5 5 C 1.38475 * 120.02207 * 179.76993 * 4 3 2 6 6 F 1.35105 * 120.01196 * 180.23013 * 5 4 3 7 7 C 1.38422 * 119.97576 * 0.48019 * 5 4 3 8 8 C 1.38411 * 119.94980 * 359.76845 * 7 5 4 9 9 F 1.35098 * 120.01350 * 179.97438 * 8 7 5 10 10 C 1.38213 * 119.97240 * 268.62396 * 3 2 1 11 11 N 1.47314 * 110.59875 * 237.16769 * 2 1 3 12 12 C 1.34522 * 106.62026 * 241.31823 * 11 2 1 13 13 O 1.21539 * 123.77037 * 180.02562 * 12 11 2 14 14 N 1.33794 * 112.46020 * 359.97438 * 12 11 2 15 15 C 1.46496 * 124.17991 * 179.72985 * 14 12 11 16 16 C 1.53004 * 109.46902 * 90.02736 * 15 14 12 17 17 C 1.50704 * 109.46918 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99726 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00325 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99608 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47583 * 60.00120 * 21 19 17 23 23 H 1.48507 * 109.46859 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47301 * 299.99452 * 21 19 17 25 25 C 1.34774 * 111.64167 * 0.02562 * 14 12 11 26 26 O 1.21236 * 127.15396 * 179.97438 * 25 14 12 27 27 H 1.09007 * 109.46842 * 182.13140 * 1 2 3 28 28 H 1.09001 * 109.47075 * 302.12572 * 1 2 3 29 29 H 1.08998 * 109.47391 * 62.12892 * 1 2 3 30 30 H 1.07995 * 119.98793 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.02169 * 179.79556 * 7 5 4 32 32 H 1.08002 * 119.98878 * 359.97438 * 10 3 2 33 33 H 0.97002 * 126.68996 * 61.35745 * 11 2 1 34 34 H 1.09001 * 109.47021 * 210.02775 * 15 14 12 35 35 H 1.09002 * 109.47306 * 330.03011 * 15 14 12 36 36 H 1.08996 * 109.46874 * 299.99702 * 16 15 14 37 37 H 1.09002 * 109.46915 * 60.00035 * 16 15 14 38 38 H 0.96998 * 119.99812 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0585 1.4112 0.0000 4 6 2.2685 2.0700 1.1967 5 6 2.7587 3.3651 1.1979 6 9 2.9682 4.0072 2.3680 7 6 3.0290 4.0034 -0.0002 8 6 2.8135 3.3445 -1.1982 9 9 3.0764 3.9665 -2.3683 10 6 2.3277 2.0478 -1.1969 11 7 2.0482 -0.7476 -1.1587 12 6 2.7627 -1.7751 -0.6653 13 8 3.3327 -2.5957 -1.3574 14 7 2.7767 -1.7923 0.6725 15 6 3.4719 -2.8013 1.4754 16 6 4.9023 -2.3348 1.7535 17 6 5.6173 -3.3726 2.5800 18 1 5.1030 -4.2747 2.8769 19 6 6.9282 -3.1707 2.9564 20 7 7.5550 -2.0729 2.5936 21 14 7.8146 -4.4573 3.9802 22 1 7.8483 -5.7433 3.2384 23 1 9.2030 -4.0045 4.2503 24 1 7.0973 -4.6465 5.2666 25 6 2.0669 -0.7702 1.1901 26 8 1.8937 -0.5192 2.3635 27 1 -0.3633 -1.0270 0.0382 28 1 -0.3633 0.5465 0.8703 29 1 -0.3634 0.4804 -0.9084 30 1 2.0533 1.5733 2.1312 31 1 3.4082 5.0146 -0.0002 32 1 2.1594 1.5335 -2.1316 33 1 1.9031 -0.5393 -2.0949 34 1 2.9451 -2.9405 2.4194 35 1 3.4970 -3.7451 0.9306 36 1 5.4290 -2.1957 0.8095 37 1 4.8772 -1.3910 2.2983 38 1 8.4771 -1.9307 2.8587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129071099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:44 Heat of formation + Delta-G solvation = -106.610908 kcal Electronic energy + Delta-G solvation = -27585.285087 eV Core-core repulsion = 23257.795225 eV Total energy + Delta-G solvation = -4327.489862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.27934 -49.16106 -42.56099 -39.29718 -38.35452 -36.29311 -35.36553 -33.15650 -31.89381 -30.69663 -29.94621 -29.80499 -25.86257 -24.86504 -23.33060 -23.28431 -22.13843 -21.13843 -19.95980 -18.56440 -17.79739 -17.26277 -16.78565 -16.75822 -16.28007 -16.13242 -15.99956 -15.92295 -15.50938 -15.30184 -14.91074 -14.63902 -14.49417 -14.41004 -13.95737 -13.59821 -13.09207 -13.02472 -12.78631 -12.67654 -12.41953 -12.22778 -12.13989 -11.79801 -11.60835 -10.96089 -10.91662 -10.59202 -10.22975 -10.14044 -9.94939 -9.66275 -9.32411 -9.26583 -9.03947 -8.97907 -8.40726 -6.05450 -4.09869 0.55571 0.67300 1.70110 2.39118 2.87284 3.19462 3.25636 3.33025 3.37072 3.39560 3.47184 3.77037 3.93965 4.21728 4.43042 4.44715 4.47831 4.63266 4.82053 5.05609 5.15518 5.30965 5.31556 5.37090 5.48962 5.62225 5.65656 5.72764 5.84273 5.93101 6.06167 6.23809 6.43488 6.59115 6.75052 7.23405 7.49294 7.56165 7.65848 7.90189 8.22865 8.32734 8.94861 9.54471 11.06129 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.003983 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.641170 B = 7027.332897 C = 7839.073356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.162 3.838 3 C -0.033 4.033 4 C -0.148 4.148 5 C 0.140 3.860 6 F -0.125 7.125 7 C -0.185 4.185 8 C 0.132 3.868 9 F -0.129 7.129 10 C -0.143 4.143 11 N -0.726 5.726 12 C 0.704 3.296 13 O -0.530 6.530 14 N -0.564 5.564 15 C 0.118 3.882 16 C 0.013 3.987 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.533 3.467 26 O -0.458 6.458 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.436 0.564 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.378 11.528 -8.079 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.071 3.929 3 C -0.035 4.035 4 C -0.167 4.167 5 C 0.120 3.880 6 F -0.103 7.103 7 C -0.205 4.205 8 C 0.112 3.888 9 F -0.107 7.107 10 C -0.162 4.162 11 N -0.392 5.392 12 C 0.405 3.595 13 O -0.402 6.402 14 N -0.308 5.308 15 C 0.000 4.000 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C 0.318 3.682 26 O -0.328 6.328 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.180 0.820 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.280 0.720 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.896 11.231 -7.711 20.935 hybrid contribution 0.790 -0.171 0.066 0.812 sum -15.105 11.060 -7.645 20.222 Atomic orbital electron populations 1.21998 0.88901 1.04328 1.04653 1.20138 0.97199 0.89158 0.86455 1.18990 0.98410 0.93552 0.92560 1.21449 1.00982 0.93722 1.00597 1.17139 0.98992 0.90760 0.81073 1.91568 1.92269 1.81152 1.45335 1.21101 1.06253 1.02760 0.90399 1.17072 0.99650 0.91039 0.80999 1.91547 1.91527 1.82298 1.45359 1.20802 1.02761 0.93571 0.99113 1.45647 1.56018 1.29219 1.08303 1.15904 0.79293 0.82101 0.82236 1.91022 1.47198 1.41149 1.60841 1.46710 1.47820 1.28677 1.07592 1.22287 0.95826 0.88657 0.93279 1.19408 0.87930 0.97500 0.97674 1.20937 0.97186 1.04611 1.33510 0.92235 1.24990 0.97436 0.95634 0.96064 1.69960 1.11798 1.25631 1.45580 0.86564 0.78635 0.81648 0.80624 1.20064 1.21225 1.20079 1.20339 0.77810 0.80826 0.89232 1.90755 1.57322 1.68513 1.16184 0.90498 0.89454 0.90059 0.81977 0.83105 0.83950 0.71979 0.89640 0.89455 0.95767 0.96052 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.97 37.16 0.33 -0.74 16 2 C 0.16 1.83 1.16 -133.25 -0.15 1.67 16 3 C -0.03 -0.37 4.87 -104.64 -0.51 -0.88 16 4 C -0.15 -1.85 9.16 -39.51 -0.36 -2.21 16 5 C 0.14 1.67 7.30 -39.43 -0.29 1.38 16 6 F -0.12 -1.59 17.27 2.25 0.04 -1.56 16 7 C -0.19 -1.92 10.01 -39.45 -0.39 -2.31 16 8 C 0.13 1.36 7.30 -39.43 -0.29 1.07 16 9 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 10 C -0.14 -1.40 9.33 -39.50 -0.37 -1.77 16 11 N -0.73 -8.36 5.29 -54.02 -0.29 -8.64 16 12 C 0.70 11.88 8.62 -88.02 -0.76 11.12 16 13 O -0.53 -10.84 17.48 5.33 0.09 -10.75 16 14 N -0.56 -10.12 2.60 -120.73 -0.31 -10.43 16 15 C 0.12 2.46 5.64 -4.04 -0.02 2.44 16 16 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 17 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.53 8.42 6.53 -10.55 -0.07 8.35 16 26 O -0.46 -8.07 15.68 5.60 0.09 -7.98 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.16 2.20 5.80 -52.49 -0.30 1.90 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.14 1.05 6.94 -52.49 -0.36 0.68 16 33 H 0.44 3.57 8.10 -40.82 -0.33 3.24 16 34 H 0.09 1.69 8.00 -51.93 -0.42 1.28 16 35 H 0.09 1.79 7.86 -51.93 -0.41 1.38 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -33.56 340.00 -6.84 -40.41 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.90 Total: -0.15 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.44 Total: 4.92 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.14 Total: -45.35 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.72 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.56 -6.84 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129071099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.203 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds