Wall clock time and date at job start Tue Mar 31 2020 13:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 110.53320 * 2 1 4 4 C 1.38204 * 119.97617 * 88.35113 * 3 2 1 5 5 C 1.38475 * 120.02207 * 179.76993 * 4 3 2 6 6 F 1.35105 * 120.01196 * 180.23013 * 5 4 3 7 7 C 1.38422 * 119.97576 * 0.48019 * 5 4 3 8 8 C 1.38411 * 119.94980 * 359.76845 * 7 5 4 9 9 F 1.35098 * 120.01350 * 179.97438 * 8 7 5 10 10 C 1.38213 * 119.97240 * 268.62396 * 3 2 1 11 11 N 1.47314 * 110.59875 * 237.16769 * 2 1 3 12 12 C 1.34522 * 106.62026 * 241.31823 * 11 2 1 13 13 O 1.21539 * 123.77037 * 180.02562 * 12 11 2 14 14 N 1.33794 * 112.46020 * 359.97438 * 12 11 2 15 15 C 1.46496 * 124.17991 * 179.72985 * 14 12 11 16 16 C 1.53004 * 109.46902 * 90.02736 * 15 14 12 17 17 C 1.50704 * 109.46918 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99726 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00325 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99608 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47583 * 60.00120 * 21 19 17 23 23 H 1.48507 * 109.46859 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47301 * 299.99452 * 21 19 17 25 25 C 1.34774 * 111.64167 * 0.02562 * 14 12 11 26 26 O 1.21236 * 127.15396 * 179.97438 * 25 14 12 27 27 H 1.09007 * 109.46842 * 182.13140 * 1 2 3 28 28 H 1.09001 * 109.47075 * 302.12572 * 1 2 3 29 29 H 1.08998 * 109.47391 * 62.12892 * 1 2 3 30 30 H 1.07995 * 119.98793 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.02169 * 179.79556 * 7 5 4 32 32 H 1.08002 * 119.98878 * 359.97438 * 10 3 2 33 33 H 0.97002 * 126.68996 * 61.35745 * 11 2 1 34 34 H 1.09001 * 109.47021 * 210.02775 * 15 14 12 35 35 H 1.09002 * 109.47306 * 330.03011 * 15 14 12 36 36 H 1.08996 * 109.46874 * 299.99702 * 16 15 14 37 37 H 1.09002 * 109.46915 * 60.00035 * 16 15 14 38 38 H 0.96998 * 119.99812 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0585 1.4112 0.0000 4 6 2.2685 2.0700 1.1967 5 6 2.7587 3.3651 1.1979 6 9 2.9682 4.0072 2.3680 7 6 3.0290 4.0034 -0.0002 8 6 2.8135 3.3445 -1.1982 9 9 3.0764 3.9665 -2.3683 10 6 2.3277 2.0478 -1.1969 11 7 2.0482 -0.7476 -1.1587 12 6 2.7627 -1.7751 -0.6653 13 8 3.3327 -2.5957 -1.3574 14 7 2.7767 -1.7923 0.6725 15 6 3.4719 -2.8013 1.4754 16 6 4.9023 -2.3348 1.7535 17 6 5.6173 -3.3726 2.5800 18 1 5.1030 -4.2747 2.8769 19 6 6.9282 -3.1707 2.9564 20 7 7.5550 -2.0729 2.5936 21 14 7.8146 -4.4573 3.9802 22 1 7.8483 -5.7433 3.2384 23 1 9.2030 -4.0045 4.2503 24 1 7.0973 -4.6465 5.2666 25 6 2.0669 -0.7702 1.1901 26 8 1.8937 -0.5192 2.3635 27 1 -0.3633 -1.0270 0.0382 28 1 -0.3633 0.5465 0.8703 29 1 -0.3634 0.4804 -0.9084 30 1 2.0533 1.5733 2.1312 31 1 3.4082 5.0146 -0.0002 32 1 2.1594 1.5335 -2.1316 33 1 1.9031 -0.5393 -2.0949 34 1 2.9451 -2.9405 2.4194 35 1 3.4970 -3.7451 0.9306 36 1 5.4290 -2.1957 0.8095 37 1 4.8772 -1.3910 2.2983 38 1 8.4771 -1.9307 2.8587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129071099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:44 Heat of formation + Delta-G solvation = -128.317923 kcal Electronic energy + Delta-G solvation = -27586.226374 eV Core-core repulsion = 23257.795225 eV Total energy + Delta-G solvation = -4328.431148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.12745 -50.09577 -43.80172 -40.33474 -39.63821 -37.51901 -36.90085 -35.12110 -33.04631 -31.91737 -31.41089 -30.62471 -27.56298 -26.05515 -24.49005 -24.39242 -23.71603 -22.34694 -21.34695 -19.61851 -18.96986 -18.66312 -18.22112 -17.81237 -17.50800 -17.27234 -17.07186 -16.90085 -16.58609 -16.45371 -16.40710 -16.22939 -15.72774 -15.40428 -15.20581 -14.93886 -14.70018 -14.32704 -14.00410 -13.61715 -13.47287 -13.39355 -13.15912 -13.02422 -12.86025 -12.75928 -12.61746 -12.11850 -12.10643 -11.98212 -11.47355 -11.25901 -10.85647 -10.61981 -10.58332 -10.17872 -9.92429 -8.25948 -6.39239 -0.32117 -0.20909 0.43939 1.11292 1.40616 1.44438 1.52079 1.86370 1.91632 2.23803 2.39286 2.55217 2.67818 3.03935 3.08660 3.30297 3.60764 3.66711 3.81130 3.91894 3.95088 4.27764 4.36536 4.42337 4.47015 4.62495 4.66718 4.68429 4.70079 4.81710 4.86182 4.97333 5.10201 5.34045 5.39472 5.55966 5.70314 5.72643 6.02397 6.05865 6.26177 6.74845 7.03061 7.30959 8.86663 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.003983 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.641170 B = 7027.332897 C = 7839.073356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.178 3.822 3 C -0.041 4.041 4 C -0.162 4.162 5 C 0.124 3.876 6 F -0.135 7.135 7 C -0.178 4.178 8 C 0.131 3.869 9 F -0.126 7.126 10 C -0.131 4.131 11 N -0.695 5.695 12 C 0.701 3.299 13 O -0.571 6.571 14 N -0.577 5.577 15 C 0.133 3.867 16 C 0.024 3.976 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.002 3.998 20 N -0.933 5.933 21 Si 0.973 3.027 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.263 1.263 25 C 0.523 3.477 26 O -0.481 6.481 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.455 0.545 34 H 0.095 0.905 35 H 0.090 0.910 36 H -0.012 1.012 37 H -0.011 1.011 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.717 11.610 -9.128 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.087 3.913 3 C -0.042 4.042 4 C -0.181 4.181 5 C 0.104 3.896 6 F -0.113 7.113 7 C -0.197 4.197 8 C 0.112 3.888 9 F -0.104 7.104 10 C -0.150 4.150 11 N -0.362 5.362 12 C 0.402 3.598 13 O -0.447 6.447 14 N -0.321 5.321 15 C 0.013 3.987 16 C -0.013 4.013 17 C -0.583 4.583 18 H 0.091 0.909 19 C -0.197 4.197 20 N -0.573 5.573 21 Si 0.796 3.204 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.187 1.187 25 C 0.310 3.690 26 O -0.352 6.352 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.163 0.837 31 H 0.188 0.812 32 H 0.190 0.810 33 H 0.304 0.696 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.006 0.994 37 H 0.008 0.992 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.294 11.359 -8.792 22.481 hybrid contribution 1.198 -0.098 0.384 1.262 sum -16.095 11.262 -8.408 21.368 Atomic orbital electron populations 1.22118 0.85245 1.05308 1.06833 1.20178 0.99456 0.88102 0.83522 1.18930 0.99277 0.93285 0.92741 1.21395 1.01930 0.94226 1.00555 1.17251 1.00073 0.90862 0.81379 1.91539 1.92498 1.81292 1.46008 1.21287 1.05089 1.03536 0.89792 1.17102 0.99564 0.91236 0.80945 1.91562 1.91486 1.82276 1.45123 1.21038 1.01043 0.93339 0.99531 1.45455 1.54162 1.27194 1.09410 1.16012 0.79426 0.82763 0.81597 1.90993 1.49158 1.43053 1.61465 1.46675 1.48200 1.29016 1.08259 1.21795 0.93088 0.89407 0.94432 1.19172 0.91045 0.96008 0.95123 1.21442 0.97889 1.05383 1.33614 0.90885 1.26033 0.98446 0.97904 0.97296 1.70112 1.12229 1.27902 1.47035 0.85384 0.77135 0.78753 0.79097 1.18838 1.20938 1.18728 1.21142 0.77089 0.80436 0.90296 1.90740 1.57934 1.68830 1.17661 0.90027 0.88885 0.86420 0.83740 0.81201 0.80985 0.69592 0.88705 0.89166 0.99372 0.99238 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.97 71.98 0.65 -1.01 16 2 C 0.18 3.70 1.16 2.24 0.00 3.70 16 3 C -0.04 -0.84 4.87 -19.88 -0.10 -0.94 16 4 C -0.16 -4.01 9.16 22.32 0.20 -3.80 16 5 C 0.12 2.92 7.30 22.37 0.16 3.08 16 6 F -0.13 -3.51 17.27 44.97 0.78 -2.73 16 7 C -0.18 -3.40 10.01 22.35 0.22 -3.17 16 8 C 0.13 2.36 7.30 22.37 0.16 2.53 16 9 F -0.13 -2.26 17.27 44.97 0.78 -1.49 16 10 C -0.13 -2.16 9.33 22.32 0.21 -1.95 16 11 N -0.70 -14.50 5.29 -443.26 -2.34 -16.85 16 12 C 0.70 23.41 8.62 179.44 1.55 24.96 16 13 O -0.57 -23.54 17.48 -3.84 -0.07 -23.60 16 14 N -0.58 -21.00 2.60 -773.11 -2.01 -23.02 16 15 C 0.13 5.70 5.64 86.38 0.49 6.19 16 16 C 0.02 1.34 5.30 29.85 0.16 1.50 16 17 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 18 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 19 C 0.00 0.09 5.46 84.65 0.46 0.55 16 20 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 21 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 C 0.52 16.56 6.53 87.94 0.57 17.13 16 26 O -0.48 -17.35 15.68 -2.89 -0.05 -17.40 16 27 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.14 4.09 5.80 -2.91 -0.02 4.08 16 31 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.17 1.76 6.94 -2.91 -0.02 1.74 16 33 H 0.46 5.89 8.10 -92.71 -0.75 5.14 16 34 H 0.09 3.84 8.00 -2.39 -0.02 3.82 16 35 H 0.09 3.78 7.86 -2.39 -0.02 3.77 16 36 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -76.19 340.00 4.75 -71.44 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.38 Total: 7.21 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 4.98 Total: 17.69 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -4.07 Total: -97.74 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.11 Total: -41.00 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 1.55 Total: -4.22 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.19 4.75 -71.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129071099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.881 kcal (2) G-P(sol) polarization free energy of solvation -76.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds