Wall clock time and date at job start Tue Mar 31 2020 13:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40045 * 119.84245 * 2 1 4 4 C 1.35781 * 119.24201 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.48778 * 180.02562 * 4 3 2 6 6 N 1.35976 * 119.02262 * 359.97438 * 4 3 2 7 7 N 1.40087 * 133.35284 * 179.97438 * 6 4 3 8 8 C 1.31180 * 107.02778 * 180.02562 * 7 6 4 9 9 S 1.76203 * 125.18514 * 180.02562 * 8 7 6 10 10 O 1.42095 * 104.28136 * 26.07289 * 9 8 7 11 11 O 1.42102 * 104.27350 * 153.93066 * 9 8 7 12 12 C 1.81405 * 104.44783 * 269.99977 * 9 8 7 13 13 C 1.53002 * 109.46724 * 180.02562 * 12 9 8 14 14 C 1.53000 * 109.46750 * 180.02562 * 13 12 9 15 15 C 1.50702 * 109.47213 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99668 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99882 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00025 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00464 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46856 * 90.00166 * 19 17 15 21 21 H 1.48502 * 109.47131 * 210.00119 * 19 17 15 22 22 H 1.48503 * 109.46760 * 330.00121 * 19 17 15 23 23 N 1.32611 * 109.62633 * 0.02562 * 8 7 6 24 24 C 1.32822 * 109.75779 * 359.97438 * 23 8 7 25 25 N 1.31345 * 119.84751 * 179.72232 * 2 1 3 26 26 H 1.08999 * 109.47015 * 90.00442 * 1 2 3 27 27 H 1.09000 * 109.46646 * 209.99594 * 1 2 3 28 28 H 1.09000 * 109.47248 * 330.00312 * 1 2 3 29 29 H 1.08002 * 120.38127 * 359.95339 * 3 2 1 30 30 H 1.08998 * 109.47550 * 89.99454 * 5 4 3 31 31 H 1.08998 * 109.46905 * 210.00121 * 5 4 3 32 32 H 1.09003 * 109.46785 * 329.99633 * 5 4 3 33 33 H 1.08999 * 109.47069 * 299.99935 * 12 9 8 34 34 H 1.08991 * 109.47215 * 60.00144 * 12 9 8 35 35 H 1.08999 * 109.46878 * 299.99542 * 13 12 9 36 36 H 1.08991 * 109.47574 * 59.99853 * 13 12 9 37 37 H 1.09011 * 109.46942 * 299.99586 * 14 13 12 38 38 H 1.09004 * 109.47742 * 59.99283 * 14 13 12 39 39 H 0.96995 * 120.00404 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2040 1.2147 0.0000 4 6 3.5617 1.2005 0.0005 5 6 4.3398 2.4911 0.0011 6 7 4.2089 0.0047 0.0016 7 7 5.5625 -0.3563 0.0019 8 6 5.6105 -1.6672 0.0025 9 16 7.0867 -2.6291 0.0037 10 8 8.0554 -1.7839 0.6091 11 8 6.7046 -3.8566 0.6092 12 6 7.4669 -2.8770 -1.7527 13 6 8.7436 -3.7097 -1.8855 14 6 9.0646 -3.9182 -3.3668 15 6 10.3225 -4.7378 -3.4977 16 1 10.8413 -5.0758 -2.6128 17 6 10.8109 -5.0561 -4.7471 18 7 11.9083 -5.7719 -4.8614 19 14 9.9132 -4.4722 -6.2777 20 1 10.4392 -3.1441 -6.6836 21 1 10.1258 -5.4463 -7.3782 22 1 8.4609 -4.3619 -5.9878 23 7 4.3785 -2.1580 0.0020 24 6 3.4988 -1.1630 0.0017 25 7 2.1608 -1.1392 0.0055 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6676 2.1522 -0.0008 30 1 4.5270 2.8021 1.0289 31 1 5.2898 2.3428 -0.5124 32 1 3.7655 3.2619 -0.5128 33 1 6.6404 -3.4007 -2.2329 34 1 7.6121 -1.9095 -2.2330 35 1 9.5703 -3.1863 -1.4051 36 1 8.5981 -4.6772 -1.4052 37 1 8.2379 -4.4414 -3.8476 38 1 9.2103 -2.9504 -3.8468 39 1 12.2522 -5.9955 -5.7403 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195087299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:36 Heat of formation + Delta-G solvation = 56.114633 kcal Electronic energy + Delta-G solvation = -24322.144474 eV Core-core repulsion = 20587.844059 eV Total energy + Delta-G solvation = -3734.300415 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.46412 -39.63570 -37.09397 -36.00795 -35.96751 -34.87871 -33.02468 -32.23394 -31.96155 -29.69647 -28.52940 -28.41929 -25.23661 -23.71776 -23.26193 -22.04770 -20.45771 -19.40887 -18.83941 -18.54729 -17.42199 -17.06678 -16.85592 -15.92294 -15.85640 -15.54886 -14.85763 -14.56646 -14.43821 -14.28310 -14.17804 -13.82625 -13.28339 -13.23011 -12.97140 -12.86139 -12.58210 -12.38363 -12.20493 -12.13248 -12.04903 -11.99005 -11.94147 -11.61388 -11.04366 -10.95341 -10.78570 -10.55514 -10.30651 -10.10520 -9.87131 -9.64433 -9.27142 -9.26540 -8.57792 -6.07449 -4.06920 -0.28593 -0.11677 0.07886 1.28647 1.59524 2.54954 2.72966 2.78079 3.27807 3.34281 3.35754 3.37877 3.52134 3.76568 3.95289 4.19921 4.41404 4.41641 4.55392 4.57656 4.72148 4.82989 4.88069 4.91106 4.95144 5.05422 5.22304 5.26368 5.34401 5.40383 5.52832 5.66194 5.68889 6.10879 6.20647 6.63017 6.84768 7.11513 7.20268 7.25486 7.70775 8.47878 8.96971 9.53413 11.05709 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002807 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.434910 B = 9971.978218 C =10406.792337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.234 3.766 3 C -0.218 4.218 4 C 0.201 3.799 5 C -0.125 4.125 6 N -0.326 5.326 7 N -0.241 5.241 8 C -0.237 4.237 9 S 2.507 3.493 10 O -0.908 6.908 11 O -0.898 6.898 12 C -0.576 4.576 13 C -0.099 4.099 14 C -0.004 4.004 15 C -0.526 4.526 16 H 0.077 0.923 17 C 0.068 3.932 18 N -0.899 5.899 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 N -0.449 5.449 24 C 0.442 3.558 25 N -0.453 5.453 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.177 0.823 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.085 20.490 9.307 33.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 C -0.243 4.243 4 C 0.084 3.916 5 C -0.182 4.182 6 N -0.108 5.108 7 N -0.073 5.073 8 C -0.595 4.595 9 S 2.676 3.324 10 O -0.905 6.905 11 O -0.894 6.894 12 C -0.710 4.710 13 C -0.139 4.139 14 C -0.043 4.043 15 C -0.564 4.564 16 H 0.095 0.905 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.190 1.190 23 N -0.180 5.180 24 C 0.081 3.919 25 N -0.170 5.170 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.195 0.805 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.247 19.276 9.990 32.547 hybrid contribution -0.806 1.504 -1.459 2.245 sum -25.053 20.780 8.530 33.649 Atomic orbital electron populations 1.20919 0.85779 1.05161 1.04754 1.22145 0.98346 0.86709 0.85949 1.21725 0.91300 1.01631 1.09598 1.21004 0.92230 0.86602 0.91789 1.21132 1.01272 0.90486 1.05325 1.48990 1.07857 1.08122 1.45805 1.78495 0.90205 1.12722 1.25872 1.38822 1.15296 1.00329 1.05089 1.06571 0.71783 0.74022 0.79992 1.93613 1.55059 1.67550 1.74243 1.93621 1.80917 1.40912 1.73987 1.30246 1.10399 1.11385 1.18998 1.21450 0.90914 0.98263 1.03243 1.19558 0.97818 0.97141 0.89814 1.21105 1.07896 1.33009 0.94433 0.90539 1.25008 0.94715 0.94593 0.99021 1.69906 1.21548 1.38298 1.24038 0.86800 0.80891 0.78738 0.82994 1.20241 1.21249 1.18987 1.70966 0.96249 1.25980 1.24820 1.22961 0.90327 0.81738 0.96864 1.67872 1.01478 1.28991 1.18658 0.88435 0.88938 0.89006 0.80520 0.88192 0.88744 0.88063 0.84198 0.84553 0.90368 0.90227 0.95872 0.96409 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.28 10.19 36.01 0.37 0.08 16 2 C 0.23 1.64 6.83 -82.12 -0.56 1.08 16 3 C -0.22 -1.08 9.39 -39.78 -0.37 -1.45 16 4 C 0.20 1.59 6.85 -81.63 -0.56 1.03 16 5 C -0.13 -0.56 10.13 36.01 0.36 -0.20 16 6 N -0.33 -4.28 3.90 -10.10 -0.04 -4.31 16 7 N -0.24 -3.70 12.64 29.92 0.38 -3.32 16 8 C -0.24 -3.91 7.70 -91.97 -0.71 -4.61 16 9 S 2.51 40.93 5.33 -107.50 -0.57 40.36 16 10 O -0.91 -16.34 17.92 -57.54 -1.03 -17.38 16 11 O -0.90 -16.90 17.92 -57.54 -1.03 -17.94 16 12 C -0.58 -8.72 5.98 37.16 0.22 -8.50 16 13 C -0.10 -1.90 5.16 -26.73 -0.14 -2.03 16 14 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 15 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 16 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 19 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 23 N -0.45 -7.83 11.22 -14.84 -0.17 -7.99 16 24 C 0.44 6.66 8.99 -323.14 -2.91 3.76 16 25 N -0.45 -5.54 10.40 -10.04 -0.10 -5.65 16 26 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 -0.02 8.09 -51.93 -0.42 -0.44 16 29 H 0.18 0.02 8.06 -52.49 -0.42 -0.41 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.11 8.09 -51.93 -0.42 -0.31 16 33 H 0.14 1.88 8.14 -51.92 -0.42 1.45 16 34 H 0.14 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.02 0.52 7.20 -51.92 -0.37 0.15 16 38 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -40.21 352.34 -10.99 -51.20 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -5.00 Total: -5.85 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -4.84 Total: -24.34 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.84 Total: -48.10 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -2.06 Total: -35.31 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.57 Total: 40.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -40.21 -10.99 -51.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195087299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.313 kcal (2) G-P(sol) polarization free energy of solvation -40.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds