Wall clock time and date at job start Tue Mar 31 2020 13:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40045 * 119.84245 * 2 1 4 4 C 1.35781 * 119.24201 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.48778 * 180.02562 * 4 3 2 6 6 N 1.35976 * 119.02262 * 359.97438 * 4 3 2 7 7 N 1.40087 * 133.35284 * 179.97438 * 6 4 3 8 8 C 1.31180 * 107.02778 * 180.02562 * 7 6 4 9 9 S 1.76203 * 125.18514 * 180.02562 * 8 7 6 10 10 O 1.42095 * 104.28136 * 26.07289 * 9 8 7 11 11 O 1.42102 * 104.27350 * 153.93066 * 9 8 7 12 12 C 1.81405 * 104.44783 * 269.99977 * 9 8 7 13 13 C 1.53002 * 109.46724 * 180.02562 * 12 9 8 14 14 C 1.53000 * 109.46750 * 180.02562 * 13 12 9 15 15 C 1.50702 * 109.47213 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99668 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99882 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00025 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00464 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46856 * 90.00166 * 19 17 15 21 21 H 1.48502 * 109.47131 * 210.00119 * 19 17 15 22 22 H 1.48503 * 109.46760 * 330.00121 * 19 17 15 23 23 N 1.32611 * 109.62633 * 0.02562 * 8 7 6 24 24 C 1.32822 * 109.75779 * 359.97438 * 23 8 7 25 25 N 1.31345 * 119.84751 * 179.72232 * 2 1 3 26 26 H 1.08999 * 109.47015 * 90.00442 * 1 2 3 27 27 H 1.09000 * 109.46646 * 209.99594 * 1 2 3 28 28 H 1.09000 * 109.47248 * 330.00312 * 1 2 3 29 29 H 1.08002 * 120.38127 * 359.95339 * 3 2 1 30 30 H 1.08998 * 109.47550 * 89.99454 * 5 4 3 31 31 H 1.08998 * 109.46905 * 210.00121 * 5 4 3 32 32 H 1.09003 * 109.46785 * 329.99633 * 5 4 3 33 33 H 1.08999 * 109.47069 * 299.99935 * 12 9 8 34 34 H 1.08991 * 109.47215 * 60.00144 * 12 9 8 35 35 H 1.08999 * 109.46878 * 299.99542 * 13 12 9 36 36 H 1.08991 * 109.47574 * 59.99853 * 13 12 9 37 37 H 1.09011 * 109.46942 * 299.99586 * 14 13 12 38 38 H 1.09004 * 109.47742 * 59.99283 * 14 13 12 39 39 H 0.96995 * 120.00404 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2040 1.2147 0.0000 4 6 3.5617 1.2005 0.0005 5 6 4.3398 2.4911 0.0011 6 7 4.2089 0.0047 0.0016 7 7 5.5625 -0.3563 0.0019 8 6 5.6105 -1.6672 0.0025 9 16 7.0867 -2.6291 0.0037 10 8 8.0554 -1.7839 0.6091 11 8 6.7046 -3.8566 0.6092 12 6 7.4669 -2.8770 -1.7527 13 6 8.7436 -3.7097 -1.8855 14 6 9.0646 -3.9182 -3.3668 15 6 10.3225 -4.7378 -3.4977 16 1 10.8413 -5.0758 -2.6128 17 6 10.8109 -5.0561 -4.7471 18 7 11.9083 -5.7719 -4.8614 19 14 9.9132 -4.4722 -6.2777 20 1 10.4392 -3.1441 -6.6836 21 1 10.1258 -5.4463 -7.3782 22 1 8.4609 -4.3619 -5.9878 23 7 4.3785 -2.1580 0.0020 24 6 3.4988 -1.1630 0.0017 25 7 2.1608 -1.1392 0.0055 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6676 2.1522 -0.0008 30 1 4.5270 2.8021 1.0289 31 1 5.2898 2.3428 -0.5124 32 1 3.7655 3.2619 -0.5128 33 1 6.6404 -3.4007 -2.2329 34 1 7.6121 -1.9095 -2.2330 35 1 9.5703 -3.1863 -1.4051 36 1 8.5981 -4.6772 -1.4052 37 1 8.2379 -4.4414 -3.8476 38 1 9.2103 -2.9504 -3.8468 39 1 12.2522 -5.9955 -5.7403 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195087299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:36 Heat of formation + Delta-G solvation = 26.442499 kcal Electronic energy + Delta-G solvation = -24323.431154 eV Core-core repulsion = 20587.844059 eV Total energy + Delta-G solvation = -3735.587095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.35100 -40.38505 -38.45655 -37.35370 -36.67950 -36.57382 -34.27663 -33.71844 -32.80425 -30.38246 -30.22739 -28.86072 -26.25714 -25.32151 -24.15395 -22.81793 -22.15324 -20.44241 -19.67645 -19.56567 -18.99250 -18.32550 -18.13036 -17.25518 -17.17809 -16.22783 -16.11692 -15.90239 -15.38021 -15.11920 -14.87049 -14.71590 -14.39039 -14.13894 -14.00524 -13.75356 -13.51044 -13.44739 -13.37847 -13.35073 -13.20825 -13.14031 -13.04256 -12.86199 -12.73541 -12.66022 -11.85449 -11.83935 -11.64832 -11.42921 -11.36123 -11.24834 -10.96587 -10.75608 -10.10435 -8.27924 -6.33400 -1.42584 -0.90849 -0.71287 0.49435 0.65202 1.37556 1.38052 1.40363 1.51627 1.90276 2.01693 2.37526 2.50820 2.57814 2.97735 3.07109 3.08164 3.52240 3.54170 3.79900 3.86885 4.09964 4.14562 4.27480 4.28729 4.42671 4.47408 4.56600 4.71009 4.73976 4.74491 4.81085 4.94335 5.01713 5.09299 5.26907 5.33179 5.45645 5.63200 5.99595 6.27099 6.36645 6.74798 7.30845 8.88838 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002807 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.434910 B = 9971.978218 C =10406.792337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.237 3.763 3 C -0.182 4.182 4 C 0.169 3.831 5 C -0.122 4.122 6 N -0.328 5.328 7 N -0.257 5.257 8 C -0.249 4.249 9 S 2.527 3.473 10 O -0.933 6.933 11 O -0.933 6.933 12 C -0.562 4.562 13 C -0.105 4.105 14 C -0.006 4.006 15 C -0.540 4.540 16 H 0.035 0.965 17 C 0.002 3.998 18 N -0.951 5.951 19 Si 0.951 3.049 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.241 1.241 23 N -0.496 5.496 24 C 0.424 3.576 25 N -0.494 5.494 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.240 0.760 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.261 24.515 8.116 39.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.075 3.925 3 C -0.205 4.205 4 C 0.054 3.946 5 C -0.178 4.178 6 N -0.111 5.111 7 N -0.091 5.091 8 C -0.610 4.610 9 S 2.700 3.300 10 O -0.929 6.929 11 O -0.930 6.930 12 C -0.697 4.697 13 C -0.144 4.144 14 C -0.045 4.045 15 C -0.578 4.578 16 H 0.054 0.946 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.164 1.164 23 N -0.229 5.229 24 C 0.063 3.937 25 N -0.214 5.214 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.151 0.849 29 H 0.256 0.744 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.458 23.344 8.831 37.853 hybrid contribution 0.276 0.406 -0.999 1.113 sum -28.182 23.751 7.833 37.678 Atomic orbital electron populations 1.21188 0.82274 1.06719 1.06237 1.23170 1.00371 0.86264 0.82738 1.22500 0.89957 1.03158 1.04887 1.22036 0.93718 0.86154 0.92672 1.21296 1.00603 0.89706 1.06224 1.49078 1.06752 1.09458 1.45769 1.78315 0.92194 1.12083 1.26532 1.38276 1.14946 1.00784 1.06952 1.05682 0.71206 0.72998 0.80139 1.93567 1.56187 1.67915 1.75259 1.93568 1.81583 1.42564 1.75240 1.30080 1.08986 1.12545 1.18116 1.21332 0.93068 0.99117 1.00924 1.19532 0.95490 0.96957 0.92532 1.21513 1.09653 1.33410 0.93268 0.94631 1.26055 0.95589 0.94720 1.03084 1.70075 1.23730 1.40261 1.25099 0.85649 0.80691 0.78461 0.77826 1.18875 1.21206 1.16388 1.70790 0.96991 1.28168 1.26994 1.23109 0.91276 0.82004 0.97314 1.68003 1.00150 1.31805 1.21407 0.86573 0.89954 0.84853 0.74356 0.87239 0.90906 0.83710 0.82032 0.81588 0.90375 0.90687 0.94806 0.94673 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.06 10.19 71.24 0.73 0.66 16 2 C 0.24 2.50 6.83 43.07 0.29 2.79 16 3 C -0.18 -0.89 9.39 22.14 0.21 -0.68 16 4 C 0.17 2.19 6.85 41.35 0.28 2.47 16 5 C -0.12 -0.68 10.13 71.24 0.72 0.04 16 6 N -0.33 -8.41 3.90 -185.88 -0.73 -9.13 16 7 N -0.26 -8.02 12.64 -59.25 -0.75 -8.76 16 8 C -0.25 -8.50 7.70 180.82 1.39 -7.11 16 9 S 2.53 85.44 5.33 -56.49 -0.30 85.14 16 10 O -0.93 -34.83 17.92 -127.65 -2.29 -37.12 16 11 O -0.93 -37.02 17.92 -127.65 -2.29 -39.31 16 12 C -0.56 -16.59 5.98 71.98 0.43 -16.16 16 13 C -0.10 -4.03 5.16 30.60 0.16 -3.87 16 14 C -0.01 -0.28 4.04 29.85 0.12 -0.16 16 15 C -0.54 -31.21 9.66 25.60 0.25 -30.96 16 16 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 17 C 0.00 0.14 5.47 84.65 0.46 0.60 16 18 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 19 Si 0.95 43.56 27.47 68.60 1.88 45.44 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 23 N -0.50 -17.96 11.22 -200.88 -2.25 -20.22 16 24 C 0.42 12.85 8.99 261.60 2.35 15.20 16 25 N -0.49 -11.64 10.40 -185.69 -1.93 -13.57 16 26 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.13 -0.96 8.09 -2.39 -0.02 -0.98 16 29 H 0.24 -1.92 8.06 -2.91 -0.02 -1.95 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.14 -0.50 8.09 -2.39 -0.02 -0.52 16 33 H 0.16 4.11 8.14 -2.39 -0.02 4.09 16 34 H 0.17 3.92 8.14 -2.40 -0.02 3.90 16 35 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.03 1.46 7.20 -2.38 -0.02 1.45 16 38 H 0.03 1.48 7.57 -2.38 -0.02 1.46 16 39 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -95.46 352.34 0.06 -95.40 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: 1.02 Total: -0.81 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 7.40 Total: -37.18 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -5.36 Total: -111.57 kcal Atomic # 8 Polarization: -71.85 SS G_CDS: -4.58 Total: -76.43 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Atomic # 16 Polarization: 85.44 SS G_CDS: -0.30 Total: 85.14 kcal Total: -95.46 0.06 -95.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195087299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.843 kcal (2) G-P(sol) polarization free energy of solvation -95.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds