Wall clock time and date at job start Tue Mar 31 2020 13:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00454 * 2 1 4 4 H 1.48494 * 109.47501 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47149 * 300.00354 * 3 2 1 6 6 H 1.48501 * 109.47326 * 60.00040 * 3 2 1 7 7 C 1.37876 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00099 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99973 * 170.00007 * 10 9 7 12 12 C 1.53241 * 109.34124 * 187.25866 * 11 10 9 13 13 N 1.47078 * 108.51801 * 306.16735 * 12 11 10 14 14 S 1.65598 * 120.88431 * 231.18852 * 13 12 11 15 15 O 1.42104 * 104.27651 * 333.93158 * 14 13 12 16 16 O 1.42095 * 104.28128 * 206.07569 * 14 13 12 17 17 C 1.81399 * 104.45041 * 89.99967 * 14 13 12 18 18 C 1.52997 * 109.47147 * 180.02562 * 17 14 13 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 17 14 20 20 C 1.52997 * 109.47127 * 180.02562 * 19 18 17 21 21 Cl 1.80299 * 109.47115 * 179.97438 * 20 19 18 22 22 C 1.47084 * 118.23867 * 51.45962 * 13 12 11 23 23 C 1.46895 * 111.00495 * 294.30323 * 10 9 7 24 24 H 0.96997 * 119.99529 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46844 * 60.00331 * 9 7 2 26 26 H 1.08997 * 109.46854 * 299.99648 * 9 7 2 27 27 H 1.08995 * 109.49254 * 67.29412 * 11 10 9 28 28 H 1.09000 * 109.51385 * 307.22612 * 11 10 9 29 29 H 1.08997 * 109.62830 * 186.46444 * 12 11 10 30 30 H 1.08999 * 109.63412 * 65.87547 * 12 11 10 31 31 H 1.08996 * 109.47243 * 60.00524 * 17 14 13 32 32 H 1.09001 * 109.47190 * 300.00108 * 17 14 13 33 33 H 1.09001 * 109.47502 * 60.00399 * 18 17 14 34 34 H 1.09001 * 109.47289 * 300.00196 * 18 17 14 35 35 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 36 36 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 37 37 H 1.09001 * 109.47289 * 299.99953 * 20 19 18 38 38 H 1.09004 * 109.47261 * 59.99697 * 20 19 18 39 39 H 1.08997 * 109.62553 * 68.25088 * 22 13 12 40 40 H 1.08999 * 109.63037 * 188.83097 * 22 13 12 41 41 H 1.09004 * 109.48998 * 292.70910 * 23 10 9 42 42 H 1.09005 * 109.49290 * 52.78554 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5212 -4.8937 0.2363 12 6 2.5638 -6.0035 0.4080 13 7 3.4607 -5.9860 -0.7576 14 16 3.7676 -7.3693 -1.6147 15 8 3.5618 -8.4161 -0.6761 16 8 5.0456 -7.1461 -2.1945 17 6 2.4841 -7.4019 -2.8961 18 6 2.6619 -8.6490 -3.7645 19 6 1.5797 -8.6762 -4.8457 20 6 1.7571 -9.9236 -5.7136 21 17 0.4814 -9.9560 -6.9873 22 6 4.0827 -4.7086 -1.1380 23 6 2.9756 -3.6487 -1.2522 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 0.8789 -5.1261 -0.6131 28 1 0.9164 -4.8199 1.1402 29 1 2.0632 -6.9697 0.4703 30 1 3.1402 -5.8272 1.3161 31 1 2.5688 -6.5108 -3.5180 32 1 1.5012 -7.4245 -2.4254 33 1 2.5769 -9.5401 -3.1424 34 1 3.6448 -8.6269 -4.2352 35 1 0.5966 -8.6982 -4.3753 36 1 1.6651 -7.7852 -5.4677 37 1 2.7402 -9.9022 -6.1840 38 1 1.6715 -10.8144 -5.0913 39 1 4.8022 -4.4104 -0.3755 40 1 4.5868 -4.8184 -2.0982 41 1 2.3131 -3.8985 -2.0809 42 1 3.4260 -2.6717 -1.4278 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236027191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:42 Heat of formation + Delta-G solvation = -87.028236 kcal Electronic energy + Delta-G solvation = -23761.364880 eV Core-core repulsion = 20121.964819 eV Total energy + Delta-G solvation = -3639.400062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.106 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.42144 -37.24389 -36.92474 -36.04950 -35.59339 -34.45422 -32.36668 -30.81542 -30.60388 -27.88886 -25.20274 -24.60978 -23.38090 -22.03336 -21.71244 -20.11410 -18.71944 -17.65989 -16.71537 -16.55576 -16.41406 -15.89088 -15.05722 -14.81233 -14.62892 -14.49839 -14.18439 -14.15123 -13.91819 -13.78480 -13.48486 -12.73367 -12.54510 -12.49044 -12.28081 -12.18539 -12.14631 -12.06271 -11.82129 -11.37080 -11.31549 -11.14483 -11.10292 -10.87890 -10.80925 -10.75842 -10.73143 -10.61579 -10.35129 -9.90852 -9.33972 -8.85719 -8.51101 -7.36366 -6.10367 -4.12162 0.12382 1.84379 2.54951 3.26386 3.34496 3.38700 3.66824 3.96987 4.02584 4.26414 4.35730 4.46888 4.54743 4.62103 4.70583 4.86061 4.93042 5.00016 5.11174 5.25293 5.34288 5.38634 5.45238 5.51165 5.57864 5.65510 5.66218 5.75587 5.98761 6.13330 6.26057 6.40581 6.44118 6.68584 7.18043 7.22567 7.71168 7.97930 8.08267 8.43936 8.95719 9.52851 11.00470 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002831 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.943246 B = 9888.111676 C =11068.541779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.534 5.534 11 C 0.040 3.960 12 C 0.128 3.872 13 N -0.997 5.997 14 S 2.609 3.391 15 O -0.957 6.957 16 O -0.956 6.956 17 C -0.634 4.634 18 C -0.111 4.111 19 C -0.124 4.124 20 C -0.036 4.036 21 Cl -0.186 7.186 22 C 0.124 3.876 23 C 0.050 3.950 24 H 0.261 0.739 25 H -0.009 1.009 26 H 0.032 0.968 27 H 0.025 0.975 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -18.916 -8.675 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.259 5.259 11 C -0.091 4.091 12 C 0.003 3.997 13 N -0.836 5.836 14 S 2.702 3.298 15 O -0.948 6.948 16 O -0.946 6.946 17 C -0.763 4.763 18 C -0.150 4.150 19 C -0.162 4.162 20 C -0.099 4.099 21 Cl -0.160 7.160 22 C -0.001 4.001 23 C -0.080 4.080 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.549 -19.326 -8.203 21.482 hybrid contribution -1.024 1.251 -1.022 1.913 sum 3.525 -18.074 -9.226 20.597 Atomic orbital electron populations 1.69961 1.06103 1.26777 1.50904 1.24994 0.94864 0.99398 0.95348 0.86442 0.80092 0.83353 0.77529 1.19597 1.21138 1.20999 1.21188 0.93555 0.89850 1.50190 0.91697 1.19737 0.89985 0.87255 0.96165 1.61980 1.27974 1.02527 1.33390 1.22425 0.94800 0.91051 1.00789 1.21579 0.91368 0.98735 0.88048 1.57705 1.60375 1.24478 1.41032 1.05053 0.75991 0.73374 0.75380 1.93582 1.86974 1.55226 1.58969 1.93586 1.36357 1.84850 1.79816 1.30745 1.20919 1.06717 1.17890 1.21269 1.00692 0.95767 0.97286 1.21876 1.00044 0.97671 0.96654 1.24425 0.92905 1.01158 0.91386 1.98732 1.59191 1.99196 1.58877 1.21779 0.95623 0.81840 1.00827 1.22447 0.95117 0.99357 0.91105 0.92921 0.99166 0.95036 0.95718 0.90064 0.89793 0.90208 0.84715 0.84813 0.90009 0.89984 0.90031 0.89984 0.88611 0.88629 0.90184 0.89745 0.95858 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -13.57 8.41 -34.44 -0.29 -13.86 16 8 H 0.06 1.71 7.13 -52.48 -0.37 1.33 16 9 C 0.19 4.73 4.72 -4.97 -0.02 4.70 16 10 N -0.53 -10.48 4.62 -235.47 -1.09 -11.57 16 11 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 12 C 0.13 1.71 6.46 -3.60 -0.02 1.68 16 13 N -1.00 -13.11 3.25 -112.97 -0.37 -13.48 16 14 S 2.61 30.67 5.42 -107.50 -0.58 30.08 16 15 O -0.96 -13.46 16.79 -57.54 -0.97 -14.42 16 16 O -0.96 -13.67 16.78 -57.54 -0.97 -14.63 16 17 C -0.63 -5.24 6.18 37.16 0.23 -5.01 16 18 C -0.11 -0.77 5.22 -26.73 -0.14 -0.91 16 19 C -0.12 -0.79 5.34 -26.73 -0.14 -0.93 16 20 C -0.04 -0.20 6.66 37.16 0.25 0.04 16 21 Cl -0.19 -1.53 29.15 -51.86 -1.51 -3.05 16 22 C 0.12 1.76 6.50 -3.36 -0.02 1.73 16 23 C 0.05 0.85 5.47 -3.47 -0.02 0.84 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 26 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 29 H 0.08 0.94 7.19 -51.93 -0.37 0.57 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.13 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.03 7.18 -51.93 -0.37 0.65 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 1.81 6.67 -51.93 -0.35 1.46 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -32.93 364.46 -11.50 -44.43 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.93 Total: -3.99 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.30 Total: -9.69 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.72 Total: -50.15 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.93 Total: -29.06 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 30.67 SS G_CDS: -0.58 Total: 30.08 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -1.51 Total: -3.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.93 -11.50 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236027191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.601 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds