Wall clock time and date at job start Tue Mar 31 2020 13:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00454 * 2 1 4 4 H 1.48494 * 109.47501 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47149 * 300.00354 * 3 2 1 6 6 H 1.48501 * 109.47326 * 60.00040 * 3 2 1 7 7 C 1.37876 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00099 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99973 * 170.00007 * 10 9 7 12 12 C 1.53241 * 109.34124 * 187.25866 * 11 10 9 13 13 N 1.47078 * 108.51801 * 306.16735 * 12 11 10 14 14 S 1.65598 * 120.88431 * 231.18852 * 13 12 11 15 15 O 1.42104 * 104.27651 * 333.93158 * 14 13 12 16 16 O 1.42095 * 104.28128 * 206.07569 * 14 13 12 17 17 C 1.81399 * 104.45041 * 89.99967 * 14 13 12 18 18 C 1.52997 * 109.47147 * 180.02562 * 17 14 13 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 17 14 20 20 C 1.52997 * 109.47127 * 180.02562 * 19 18 17 21 21 Cl 1.80299 * 109.47115 * 179.97438 * 20 19 18 22 22 C 1.47084 * 118.23867 * 51.45962 * 13 12 11 23 23 C 1.46895 * 111.00495 * 294.30323 * 10 9 7 24 24 H 0.96997 * 119.99529 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46844 * 60.00331 * 9 7 2 26 26 H 1.08997 * 109.46854 * 299.99648 * 9 7 2 27 27 H 1.08995 * 109.49254 * 67.29412 * 11 10 9 28 28 H 1.09000 * 109.51385 * 307.22612 * 11 10 9 29 29 H 1.08997 * 109.62830 * 186.46444 * 12 11 10 30 30 H 1.08999 * 109.63412 * 65.87547 * 12 11 10 31 31 H 1.08996 * 109.47243 * 60.00524 * 17 14 13 32 32 H 1.09001 * 109.47190 * 300.00108 * 17 14 13 33 33 H 1.09001 * 109.47502 * 60.00399 * 18 17 14 34 34 H 1.09001 * 109.47289 * 300.00196 * 18 17 14 35 35 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 36 36 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 37 37 H 1.09001 * 109.47289 * 299.99953 * 20 19 18 38 38 H 1.09004 * 109.47261 * 59.99697 * 20 19 18 39 39 H 1.08997 * 109.62553 * 68.25088 * 22 13 12 40 40 H 1.08999 * 109.63037 * 188.83097 * 22 13 12 41 41 H 1.09004 * 109.48998 * 292.70910 * 23 10 9 42 42 H 1.09005 * 109.49290 * 52.78554 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5212 -4.8937 0.2363 12 6 2.5638 -6.0035 0.4080 13 7 3.4607 -5.9860 -0.7576 14 16 3.7676 -7.3693 -1.6147 15 8 3.5618 -8.4161 -0.6761 16 8 5.0456 -7.1461 -2.1945 17 6 2.4841 -7.4019 -2.8961 18 6 2.6619 -8.6490 -3.7645 19 6 1.5797 -8.6762 -4.8457 20 6 1.7571 -9.9236 -5.7136 21 17 0.4814 -9.9560 -6.9873 22 6 4.0827 -4.7086 -1.1380 23 6 2.9756 -3.6487 -1.2522 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 0.8789 -5.1261 -0.6131 28 1 0.9164 -4.8199 1.1402 29 1 2.0632 -6.9697 0.4703 30 1 3.1402 -5.8272 1.3161 31 1 2.5688 -6.5108 -3.5180 32 1 1.5012 -7.4245 -2.4254 33 1 2.5769 -9.5401 -3.1424 34 1 3.6448 -8.6269 -4.2352 35 1 0.5966 -8.6982 -4.3753 36 1 1.6651 -7.7852 -5.4677 37 1 2.7402 -9.9022 -6.1840 38 1 1.6715 -10.8144 -5.0913 39 1 4.8022 -4.4104 -0.3755 40 1 4.5868 -4.8184 -2.0982 41 1 2.3131 -3.8985 -2.0809 42 1 3.4260 -2.6717 -1.4278 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236027191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:41 Heat of formation + Delta-G solvation = -110.313765 kcal Electronic energy + Delta-G solvation = -23762.374617 eV Core-core repulsion = 20121.964819 eV Total energy + Delta-G solvation = -3640.409798 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.106 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.75024 -38.26021 -37.45136 -37.05971 -36.16147 -35.97759 -34.25937 -32.04870 -31.17355 -29.63071 -26.78437 -25.23690 -24.64465 -23.57822 -22.44440 -21.34161 -19.76195 -18.70791 -18.46775 -17.45102 -17.43586 -16.70996 -16.66330 -15.92838 -15.71597 -15.56776 -15.44979 -15.26445 -14.91205 -14.86471 -14.42545 -14.09780 -13.65804 -13.48075 -13.33647 -13.27403 -13.18104 -13.00609 -12.86332 -12.71234 -12.63307 -12.58893 -12.27143 -12.20413 -12.02260 -11.87629 -11.86172 -11.55047 -11.31180 -11.26421 -11.14832 -10.60887 -10.02131 -8.95303 -8.19306 -6.28458 -0.78543 1.36435 1.42087 1.43918 1.56317 1.58098 2.41575 2.82401 3.09548 3.13931 3.29574 3.39492 3.66296 3.71784 3.97415 4.02071 4.15032 4.15838 4.29375 4.37426 4.39995 4.48904 4.51139 4.52599 4.59420 4.77171 4.81411 4.90879 5.02348 5.05252 5.09122 5.13655 5.18525 5.26548 5.30437 5.55529 5.67516 6.07611 6.35805 6.66418 6.88669 7.41623 8.91718 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002831 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.943246 B = 9888.111676 C =11068.541779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.545 5.545 11 C 0.038 3.962 12 C 0.134 3.866 13 N -1.003 6.003 14 S 2.616 3.384 15 O -0.982 6.982 16 O -0.983 6.983 17 C -0.614 4.614 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.034 4.034 21 Cl -0.211 7.211 22 C 0.133 3.867 23 C 0.050 3.950 24 H 0.263 0.737 25 H -0.036 1.036 26 H 0.005 0.995 27 H 0.034 0.966 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.030 0.970 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.584 -19.868 -9.494 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.270 5.270 11 C -0.092 4.092 12 C 0.008 3.992 13 N -0.840 5.840 14 S 2.714 3.286 15 O -0.972 6.972 16 O -0.974 6.974 17 C -0.746 4.746 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.096 4.096 21 Cl -0.184 7.184 22 C 0.008 3.992 23 C -0.080 4.080 24 H 0.072 0.928 25 H -0.018 1.018 26 H 0.023 0.977 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.048 0.952 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.414 -20.297 -8.987 22.848 hybrid contribution -1.300 1.463 -0.791 2.111 sum 4.114 -18.834 -9.778 21.616 Atomic orbital electron populations 1.70080 1.07677 1.27738 1.52037 1.25863 0.95671 1.03058 0.94983 0.85384 0.79114 0.78884 0.77532 1.18630 1.20594 1.20762 1.21516 0.93711 0.91034 1.49579 0.91705 1.19360 0.90018 0.88761 0.93574 1.61868 1.27212 1.02931 1.35000 1.22524 0.95673 0.89966 1.01055 1.21534 0.90746 0.98799 0.88100 1.57707 1.60370 1.24299 1.41641 1.04769 0.76136 0.72265 0.75451 1.93549 1.87418 1.55699 1.60554 1.93549 1.38852 1.84935 1.80063 1.30547 1.19390 1.08268 1.16438 1.21412 1.01484 0.95419 0.97468 1.21835 0.99768 0.97958 0.96477 1.24594 0.92633 1.01513 0.90887 1.98734 1.60429 1.99219 1.60060 1.21635 0.94265 0.81410 1.01922 1.22449 0.95679 0.99630 0.90203 0.92790 1.01790 0.97703 0.94763 0.90301 0.87145 0.90689 0.83423 0.83207 0.88877 0.89027 0.90074 0.90199 0.87225 0.87140 0.90822 0.87475 0.95189 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.52 -28.16 8.41 25.60 0.22 -27.95 16 8 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16 9 C 0.21 10.52 4.72 85.56 0.40 10.92 16 10 N -0.55 -21.55 4.62 -898.88 -4.15 -25.70 16 11 C 0.04 1.17 5.62 86.38 0.49 1.65 16 12 C 0.13 3.35 6.46 86.35 0.56 3.91 16 13 N -1.00 -24.59 3.25 -511.34 -1.66 -26.25 16 14 S 2.62 55.69 5.42 -56.49 -0.31 55.39 16 15 O -0.98 -25.57 16.79 -127.65 -2.14 -27.71 16 16 O -0.98 -26.28 16.78 -127.65 -2.14 -28.42 16 17 C -0.61 -8.18 6.18 71.98 0.44 -7.74 16 18 C -0.12 -1.26 5.22 30.60 0.16 -1.10 16 19 C -0.12 -1.21 5.34 30.60 0.16 -1.05 16 20 C -0.03 -0.30 6.66 71.98 0.48 0.18 16 21 Cl -0.21 -3.16 29.15 -2.72 -0.08 -3.24 16 22 C 0.13 3.59 6.50 86.50 0.56 4.15 16 23 C 0.05 1.70 5.47 86.54 0.47 2.18 16 24 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 25 H -0.04 -1.94 8.12 -2.39 -0.02 -1.96 16 26 H 0.00 0.27 7.97 -2.39 -0.02 0.25 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 2.45 7.99 -2.39 -0.02 2.44 16 29 H 0.11 2.21 7.19 -2.39 -0.02 2.19 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.15 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.11 2.40 7.18 -2.39 -0.02 2.38 16 41 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 2.89 6.67 -2.38 -0.02 2.88 16 Total: -1.00 -71.34 364.46 -2.78 -74.12 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.99 Total: 5.43 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 4.41 Total: -14.27 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -5.53 Total: -106.40 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -4.29 Total: -56.14 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 55.69 SS G_CDS: -0.31 Total: 55.39 kcal Atomic # 17 Polarization: -3.16 SS G_CDS: -0.08 Total: -3.24 kcal Total: -71.34 -2.78 -74.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236027191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.190 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds