Wall clock time and date at job start Tue Mar 31 2020 13:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.46564 * 180.02562 * 8 6 5 10 10 C 1.44543 * 120.61891 * 89.99796 * 9 8 6 11 11 C 1.53426 * 111.71888 * 179.97438 * 10 9 8 12 12 S 1.82066 * 103.93452 * 0.02562 * 11 10 9 13 13 C 1.33011 * 120.61166 * 269.71567 * 9 8 6 14 14 O 1.21618 * 125.19950 * 359.97438 * 13 9 8 15 15 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 16 16 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 17 17 C 1.46509 * 125.97450 * 359.96761 * 16 2 1 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 2 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47086 * 60.00203 * 22 20 18 24 24 H 1.48506 * 109.46840 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47109 * 299.99717 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 30 30 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 31 31 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 32 32 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 33 33 H 1.08995 * 109.04120 * 300.56976 * 10 9 8 34 34 H 1.08998 * 109.03713 * 59.49746 * 10 9 8 35 35 H 1.08993 * 110.53354 * 118.61446 * 11 10 9 36 36 H 1.09003 * 110.53231 * 241.24957 * 11 10 9 37 37 H 1.08994 * 109.46750 * 210.00045 * 17 16 2 38 38 H 1.09004 * 109.46474 * 329.99737 * 17 16 2 39 39 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 7 5.4461 5.1034 0.0256 10 6 5.2401 5.8030 1.2735 11 6 4.8136 7.2589 1.0445 12 16 4.7664 7.4220 -0.7682 13 6 5.2596 5.7611 -1.1154 14 8 5.4044 5.2906 -2.2275 15 7 3.6337 -0.6577 -0.0036 16 7 2.3017 -1.0909 -0.0059 17 6 1.8500 -2.4847 -0.0128 18 6 1.6945 -2.9553 -1.4359 19 1 1.9108 -2.2836 -2.2535 20 6 1.2770 -4.2437 -1.6941 21 7 1.0140 -5.0617 -0.6985 22 14 1.0848 -4.8273 -3.4582 23 1 2.3906 -4.7263 -4.1580 24 1 0.6269 -6.2400 -3.4651 25 1 0.0835 -3.9795 -4.1538 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9719 2.1210 -0.0004 30 1 5.6584 1.0776 0.0049 31 1 6.4547 3.4893 0.9060 32 1 6.4532 3.4983 -0.8739 33 1 4.4655 5.2912 1.8445 34 1 6.1683 5.7918 1.8448 35 1 3.8267 7.4396 1.4701 36 1 5.5452 7.9436 1.4736 37 1 2.5849 -3.1072 0.4976 38 1 0.8916 -2.5584 0.5012 39 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271126269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:24 Heat of formation + Delta-G solvation = 23.996934 kcal Electronic energy + Delta-G solvation = -24484.931518 eV Core-core repulsion = 20749.238375 eV Total energy + Delta-G solvation = -3735.693143 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.02665 -40.39714 -38.94844 -36.98798 -34.92051 -33.44214 -32.21112 -31.43248 -30.86747 -28.67239 -26.62536 -26.37443 -25.20411 -23.29496 -22.21972 -20.86155 -19.89993 -19.33099 -18.59222 -17.49394 -17.18364 -16.71746 -16.21217 -16.05249 -15.53265 -15.30447 -14.86489 -14.62085 -14.49623 -14.34522 -14.13098 -13.93978 -13.43064 -13.04843 -12.69807 -12.64081 -12.50016 -12.36409 -12.09977 -11.71773 -11.44607 -11.33372 -11.12413 -10.84113 -10.51989 -10.30897 -10.22697 -10.18561 -9.85902 -9.58249 -9.38855 -8.66125 -8.59133 -7.99928 -7.52131 -6.27726 -4.35619 0.75344 1.42679 1.87494 2.16804 2.43981 2.81075 2.87849 3.22895 3.26460 3.31253 3.63013 3.72567 3.77650 4.18475 4.28724 4.49145 4.52945 4.80306 4.83898 4.89002 5.05944 5.06552 5.36676 5.48927 5.66354 5.89284 6.06044 6.17106 6.39522 6.42959 6.48074 6.65693 6.89070 7.01193 7.23055 7.36353 7.55838 7.64825 7.86083 8.00404 8.10152 8.59409 8.72117 9.31055 10.79523 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.002472 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.330989 B =11325.328247 C =11531.993925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.261 3.739 5 N -0.627 5.627 6 C 0.500 3.500 7 O -0.505 6.505 8 C 0.105 3.895 9 N -0.594 5.594 10 C 0.100 3.900 11 C -0.099 4.099 12 S -0.171 6.171 13 C 0.551 3.449 14 O -0.478 6.478 15 N -0.318 5.318 16 N -0.316 5.316 17 C 0.259 3.741 18 C -0.538 4.538 19 H 0.064 0.936 20 C 0.067 3.933 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.411 0.589 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 22.113 8.426 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.009 3.991 5 N -0.275 5.275 6 C 0.283 3.717 7 O -0.378 6.378 8 C -0.025 4.025 9 N -0.330 5.330 10 C -0.024 4.024 11 C -0.248 4.248 12 S 0.055 5.945 13 C 0.229 3.771 14 O -0.354 6.354 15 N -0.149 5.149 16 N -0.098 5.098 17 C 0.141 3.859 18 C -0.577 4.577 19 H 0.082 0.918 20 C -0.137 4.137 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.175 0.825 30 H 0.247 0.753 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.893 21.848 7.137 24.644 hybrid contribution 0.178 -1.057 -0.164 1.085 sum 9.071 20.791 6.973 23.731 Atomic orbital electron populations 1.20385 0.87871 1.03948 1.02535 1.21068 0.94957 0.87114 1.00762 1.21217 0.89740 0.99741 1.21310 1.18963 0.87113 0.89597 1.03435 1.42372 1.07760 1.04878 1.72517 1.20980 0.91812 0.81894 0.76980 1.90678 1.26392 1.73724 1.46956 1.21335 0.94823 0.79408 1.06948 1.47412 1.68694 1.10973 1.05945 1.21410 1.03871 0.91538 0.85579 1.24186 1.07875 0.98366 0.94349 1.87501 1.85334 1.15086 1.06615 1.21685 0.79422 0.89829 0.86162 1.90905 1.53028 1.69224 1.22247 1.77252 1.00038 1.08424 1.29174 1.49018 1.00923 1.07843 1.52014 1.19699 0.95980 0.71234 0.98956 1.21288 1.47028 0.98019 0.91334 0.91782 1.24921 0.94601 0.96001 0.98174 1.69903 1.44777 1.07036 1.31235 0.86411 0.78876 0.77667 0.83731 1.19950 1.20923 1.19890 0.91054 0.89839 0.90614 0.82500 0.75329 0.86118 0.85869 0.88640 0.88955 0.86292 0.86331 0.92975 0.92767 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -5.91 9.52 -39.83 -0.38 -6.29 16 4 C 0.26 5.20 8.11 -154.38 -1.25 3.95 16 5 N -0.63 -9.04 5.45 -11.13 -0.06 -9.10 16 6 C 0.50 6.63 7.87 -10.98 -0.09 6.54 16 7 O -0.50 -8.55 13.56 5.55 0.08 -8.47 16 8 C 0.11 0.87 6.05 -5.19 -0.03 0.84 16 9 N -0.59 -5.47 2.27 -180.65 -0.41 -5.88 16 10 C 0.10 0.53 6.80 -4.87 -0.03 0.50 16 11 C -0.10 -0.46 7.42 37.38 0.28 -0.18 16 12 S -0.17 -1.68 23.25 -107.50 -2.50 -4.18 16 13 C 0.55 6.91 8.27 53.27 0.44 7.35 16 14 O -0.48 -7.88 17.27 5.26 0.09 -7.79 16 15 N -0.32 -7.24 12.59 31.44 0.40 -6.84 16 16 N -0.32 -7.44 3.59 -58.32 -0.21 -7.65 16 17 C 0.26 6.60 5.81 -5.19 -0.03 6.57 16 18 C -0.54 -14.83 9.39 -34.44 -0.32 -15.16 16 19 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 22 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.16 3.15 5.92 -52.49 -0.31 2.84 16 30 H 0.41 4.48 8.82 -40.82 -0.36 4.12 16 31 H 0.12 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.12 0.97 7.65 -51.93 -0.40 0.57 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.05 1.36 7.65 -51.93 -0.40 0.97 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -36.61 352.56 -8.11 -44.71 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.79 Total: 1.91 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.73 Total: 6.04 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.45 Total: -53.70 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.17 Total: -16.26 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.50 Total: -4.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.61 -8.11 -44.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271126269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.711 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds