Wall clock time and date at job start Tue Mar 31 2020 13:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.46564 * 180.02562 * 8 6 5 10 10 C 1.44543 * 120.61891 * 89.99796 * 9 8 6 11 11 C 1.53426 * 111.71888 * 179.97438 * 10 9 8 12 12 S 1.82066 * 103.93452 * 0.02562 * 11 10 9 13 13 C 1.33011 * 120.61166 * 269.71567 * 9 8 6 14 14 O 1.21618 * 125.19950 * 359.97438 * 13 9 8 15 15 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 16 16 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 17 17 C 1.46509 * 125.97450 * 359.96761 * 16 2 1 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 2 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47086 * 60.00203 * 22 20 18 24 24 H 1.48506 * 109.46840 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47109 * 299.99717 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 30 30 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 31 31 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 32 32 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 33 33 H 1.08995 * 109.04120 * 300.56976 * 10 9 8 34 34 H 1.08998 * 109.03713 * 59.49746 * 10 9 8 35 35 H 1.08993 * 110.53354 * 118.61446 * 11 10 9 36 36 H 1.09003 * 110.53231 * 241.24957 * 11 10 9 37 37 H 1.08994 * 109.46750 * 210.00045 * 17 16 2 38 38 H 1.09004 * 109.46474 * 329.99737 * 17 16 2 39 39 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 7 5.4461 5.1034 0.0256 10 6 5.2401 5.8030 1.2735 11 6 4.8136 7.2589 1.0445 12 16 4.7664 7.4220 -0.7682 13 6 5.2596 5.7611 -1.1154 14 8 5.4044 5.2906 -2.2275 15 7 3.6337 -0.6577 -0.0036 16 7 2.3017 -1.0909 -0.0059 17 6 1.8500 -2.4847 -0.0128 18 6 1.6945 -2.9553 -1.4359 19 1 1.9108 -2.2836 -2.2535 20 6 1.2770 -4.2437 -1.6941 21 7 1.0140 -5.0617 -0.6985 22 14 1.0848 -4.8273 -3.4582 23 1 2.3906 -4.7263 -4.1580 24 1 0.6269 -6.2400 -3.4651 25 1 0.0835 -3.9795 -4.1538 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9719 2.1210 -0.0004 30 1 5.6584 1.0776 0.0049 31 1 6.4547 3.4893 0.9060 32 1 6.4532 3.4983 -0.8739 33 1 4.4655 5.2912 1.8445 34 1 6.1683 5.7918 1.8448 35 1 3.8267 7.4396 1.4701 36 1 5.5452 7.9436 1.4736 37 1 2.5849 -3.1072 0.4976 38 1 0.8916 -2.5584 0.5012 39 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271126269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:24 Heat of formation + Delta-G solvation = -2.024560 kcal Electronic energy + Delta-G solvation = -24486.059894 eV Core-core repulsion = 20749.238375 eV Total energy + Delta-G solvation = -3736.821520 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.38315 -41.50283 -40.09563 -37.80360 -36.35127 -35.34042 -33.29931 -32.74843 -32.38982 -29.60957 -28.37418 -27.90956 -25.88863 -25.00025 -23.40847 -21.87339 -21.32937 -20.74377 -19.30988 -18.83477 -18.44732 -18.14175 -17.55532 -17.03215 -16.91743 -16.63967 -16.22628 -15.76720 -15.56231 -15.32629 -15.25389 -15.01879 -14.70349 -14.36661 -13.91095 -13.84767 -13.69844 -13.60434 -13.25086 -13.12905 -13.07378 -12.86003 -12.70376 -12.26959 -12.14096 -11.96093 -11.61150 -11.38964 -11.20440 -11.11850 -10.75647 -10.28619 -9.62179 -9.28384 -9.18302 -8.35204 -6.52819 0.00041 0.85309 0.87965 0.98262 1.29464 1.37061 1.37897 1.39562 1.47708 1.95995 2.14898 2.28939 2.40727 2.94605 3.29164 3.45177 3.85801 3.95368 4.00076 4.12382 4.23856 4.42159 4.47644 4.61085 4.71780 4.73276 4.73662 4.84452 4.87425 4.94462 4.98614 5.10008 5.22802 5.51052 5.70485 5.78741 5.89978 6.20385 6.22409 6.41849 6.59172 6.91739 7.07173 7.18243 8.70598 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.002472 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.330989 B =11325.328247 C =11531.993925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.299 4.299 4 C 0.272 3.728 5 N -0.619 5.619 6 C 0.499 3.501 7 O -0.543 6.543 8 C 0.112 3.888 9 N -0.589 5.589 10 C 0.090 3.910 11 C -0.081 4.081 12 S -0.210 6.210 13 C 0.537 3.463 14 O -0.536 6.536 15 N -0.355 5.355 16 N -0.342 5.342 17 C 0.276 3.724 18 C -0.556 4.556 19 H 0.047 0.953 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.271 1.271 25 H -0.267 1.267 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.428 0.572 31 H 0.180 0.820 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.026 0.974 38 H 0.052 0.948 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.144 23.642 9.670 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.330 4.330 4 C 0.018 3.982 5 N -0.270 5.270 6 C 0.285 3.715 7 O -0.417 6.417 8 C -0.018 4.018 9 N -0.323 5.323 10 C -0.033 4.033 11 C -0.228 4.228 12 S 0.016 5.984 13 C 0.216 3.784 14 O -0.417 6.417 15 N -0.186 5.186 16 N -0.125 5.125 17 C 0.158 3.842 18 C -0.594 4.594 19 H 0.065 0.935 20 C -0.176 4.176 21 N -0.554 5.554 22 Si 0.792 3.208 23 H -0.201 1.201 24 H -0.195 1.195 25 H -0.192 1.192 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.180 0.820 30 H 0.267 0.733 31 H 0.197 0.803 32 H 0.147 0.853 33 H 0.114 0.886 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.788 23.412 8.441 26.742 hybrid contribution -0.076 -1.377 -0.424 1.443 sum 9.712 22.034 8.016 25.379 Atomic orbital electron populations 1.20498 0.85477 1.04239 1.04188 1.21736 0.96649 0.86523 0.99428 1.21384 0.90159 0.99691 1.21776 1.19340 0.88863 0.89233 1.00795 1.42551 1.07080 1.04999 1.72366 1.22040 0.93022 0.81428 0.74977 1.90654 1.28466 1.74184 1.48429 1.21582 0.92387 0.77858 1.09986 1.47648 1.67148 1.11206 1.06315 1.21829 1.06288 0.91178 0.83972 1.24499 1.09922 0.98916 0.89505 1.87589 1.84981 1.13585 1.12216 1.22133 0.79187 0.90770 0.86283 1.90860 1.55517 1.70970 1.24321 1.77173 1.00005 1.09968 1.31412 1.48801 1.01793 1.07522 1.54383 1.19239 0.94977 0.72368 0.97652 1.21406 1.47805 0.98405 0.91823 0.93488 1.25692 0.93901 0.95853 1.02151 1.69978 1.44883 1.07448 1.33086 0.85455 0.78715 0.77777 0.78845 1.20145 1.19515 1.19204 0.88636 0.91470 0.88258 0.81988 0.73301 0.80328 0.85303 0.88627 0.84421 0.85058 0.82749 0.95545 0.92979 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.91 9.89 71.24 0.70 -2.20 16 2 C 0.09 3.69 6.92 41.38 0.29 3.98 16 3 C -0.30 -12.24 9.52 22.11 0.21 -12.03 16 4 C 0.27 10.81 8.11 133.32 1.08 11.89 16 5 N -0.62 -17.11 5.45 -307.50 -1.68 -18.79 16 6 C 0.50 12.40 7.87 87.66 0.69 13.09 16 7 O -0.54 -17.89 13.56 -3.06 -0.04 -17.93 16 8 C 0.11 1.50 6.05 85.63 0.52 2.02 16 9 N -0.59 -9.33 2.27 -844.69 -1.91 -11.24 16 10 C 0.09 0.58 6.80 86.89 0.59 1.17 16 11 C -0.08 -0.46 7.42 72.13 0.54 0.08 16 12 S -0.21 -3.90 23.25 -56.49 -1.31 -5.21 16 13 C 0.54 13.16 8.27 130.06 1.08 14.24 16 14 O -0.54 -18.17 17.27 -4.09 -0.07 -18.24 16 15 N -0.36 -16.48 12.59 -54.44 -0.69 -17.16 16 16 N -0.34 -16.60 3.59 -338.43 -1.22 -17.81 16 17 C 0.28 14.63 5.81 85.63 0.50 15.12 16 18 C -0.56 -31.46 9.39 25.60 0.24 -31.22 16 19 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 20 C 0.03 1.40 5.46 84.66 0.46 1.86 16 21 N -0.92 -51.71 13.29 21.45 0.28 -51.42 16 22 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H 0.10 2.74 8.14 -2.39 -0.02 2.73 16 27 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 28 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 29 H 0.16 6.46 5.92 -2.91 -0.02 6.44 16 30 H 0.43 8.63 8.82 -92.71 -0.82 7.81 16 31 H 0.18 0.36 8.08 -2.39 -0.02 0.34 16 32 H 0.13 1.74 7.65 -2.39 -0.02 1.72 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.14 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 2.72 7.65 -2.39 -0.02 2.70 16 39 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -84.64 352.56 2.57 -82.07 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.28 Total: 12.23 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.89 Total: 18.00 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -5.21 Total: -116.42 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.11 Total: -36.17 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.31 Total: -5.21 kcal Total: -84.64 2.57 -82.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271126269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.048 kcal (2) G-P(sol) polarization free energy of solvation -84.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds