Wall clock time and date at job start Tue Mar 31 2020 13:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99740 * 2 1 4 4 H 1.48500 * 109.47017 * 272.92828 * 3 2 1 5 5 H 1.48498 * 109.47215 * 32.92945 * 3 2 1 6 6 H 1.48501 * 109.47242 * 152.93209 * 3 2 1 7 7 C 1.38813 * 120.00627 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99481 * 339.35998 * 7 2 1 9 9 N 1.36933 * 120.00602 * 159.36189 * 7 2 1 10 10 C 1.46918 * 120.63570 * 152.59072 * 9 7 2 11 11 C 1.53190 * 108.77348 * 126.38973 * 10 9 7 12 12 C 1.53036 * 109.31434 * 54.64153 * 11 10 9 13 13 C 1.53045 * 109.53743 * 298.63390 * 12 11 10 14 14 H 1.08995 * 109.49348 * 301.38085 * 13 12 11 15 15 C 1.53001 * 109.49706 * 181.31549 * 13 12 11 16 16 N 1.46505 * 109.46800 * 175.06732 * 15 13 12 17 17 C 1.34769 * 119.99902 * 180.02562 * 16 15 13 18 18 O 1.21515 * 120.00407 * 359.97438 * 17 16 15 19 19 C 1.48154 * 119.99977 * 179.97438 * 17 16 15 20 20 C 1.39402 * 120.08637 * 179.97438 * 19 17 16 21 21 N 1.32093 * 119.90583 * 180.02562 * 20 19 17 22 22 C 1.32099 * 120.09050 * 359.97438 * 21 20 19 23 23 C 1.38905 * 120.17515 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 119.95030 * 179.97438 * 23 22 21 25 25 N 1.31889 * 120.09294 * 359.97438 * 23 22 21 26 26 C 1.46941 * 120.60220 * 332.57479 * 9 7 2 27 27 H 0.96993 * 120.00528 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58553 * 6.60603 * 10 9 7 29 29 H 1.08999 * 109.70750 * 246.24985 * 10 9 7 30 30 H 1.09001 * 109.50456 * 294.68607 * 11 10 9 31 31 H 1.09009 * 109.49936 * 174.59179 * 11 10 9 32 32 H 1.08999 * 109.46669 * 178.61092 * 12 11 10 33 33 H 1.09000 * 109.45240 * 58.64498 * 12 11 10 34 34 H 1.08998 * 109.47195 * 55.06579 * 15 13 12 35 35 H 1.08998 * 109.47008 * 295.05978 * 15 13 12 36 36 H 0.97001 * 119.99985 * 359.97438 * 16 15 13 37 37 H 1.08005 * 120.04241 * 0.04554 * 20 19 17 38 38 H 1.08003 * 119.90769 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.56239 * 113.79920 * 26 9 7 40 40 H 1.09004 * 109.61299 * 353.37544 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4356 2.0822 -1.3983 5 1 1.4799 2.6340 0.7611 6 1 3.5773 1.4232 0.6371 7 6 2.0103 -1.2021 0.0005 8 1 1.5223 -2.1072 0.3307 9 7 3.3138 -1.2403 -0.4174 10 6 4.2352 -2.2625 0.0969 11 6 4.8753 -2.9908 -1.0890 12 6 5.5291 -1.9664 -2.0192 13 6 4.4623 -1.0104 -2.5581 14 1 3.7000 -1.5790 -3.0906 15 6 5.1115 -0.0070 -3.5134 16 7 4.0743 0.8319 -4.1191 17 6 4.4146 1.7930 -5.0004 18 8 5.5817 1.9642 -5.2924 19 6 3.3657 2.6410 -5.6134 20 6 3.7157 3.6360 -6.5249 21 7 2.7777 4.3903 -7.0689 22 6 1.5094 4.2025 -6.7506 23 6 1.1567 3.2120 -5.8429 24 17 -0.5117 2.9706 -5.4284 25 7 2.0875 2.4548 -5.2955 26 6 3.8168 -0.2596 -1.3892 27 1 -0.4850 0.8399 -0.0004 28 1 3.6842 -2.9760 0.7097 29 1 5.0119 -1.7887 0.6972 30 1 4.1089 -3.5409 -1.6350 31 1 5.6319 -3.6856 -0.7240 32 1 6.0066 -2.4839 -2.8512 33 1 6.2781 -1.3999 -1.4659 34 1 5.6471 -0.5445 -4.2959 35 1 5.8100 0.6213 -2.9607 36 1 3.1427 0.6951 -3.8864 37 1 4.7524 3.7897 -6.7860 38 1 0.7449 4.8212 -7.1969 39 1 4.5587 0.3801 -0.9114 40 1 2.9901 0.3480 -1.7572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277084113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:56 Heat of formation + Delta-G solvation = 28.204572 kcal Electronic energy + Delta-G solvation = -25301.190562 eV Core-core repulsion = 21563.636169 eV Total energy + Delta-G solvation = -3737.554392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66704 -39.58115 -38.10528 -37.09855 -35.17736 -34.69780 -33.10673 -31.97148 -31.07607 -30.53634 -26.73709 -25.37349 -25.28077 -24.59076 -22.57041 -21.20590 -20.89529 -19.47919 -18.52555 -18.16748 -17.24671 -16.85762 -16.03507 -15.95749 -15.76351 -15.50413 -14.85593 -14.25009 -14.15794 -13.92497 -13.44018 -13.33576 -13.30814 -12.90179 -12.58975 -12.51009 -12.21092 -12.12905 -11.69928 -11.65584 -11.50132 -11.43482 -10.83637 -10.68796 -10.62886 -10.50436 -10.16048 -9.94375 -9.72821 -9.64448 -9.59071 -9.47486 -9.06060 -8.63685 -7.00216 -5.97797 -3.33413 -0.11390 0.45349 1.30596 2.41235 2.86298 3.28238 3.32503 3.45996 3.48031 3.63194 3.76228 3.82099 4.49327 4.55856 4.69729 4.78482 4.81381 5.12177 5.20196 5.26794 5.41012 5.56781 5.62359 5.72413 5.78064 5.98178 6.06401 6.07565 6.25213 6.29480 6.36731 6.50340 6.52115 6.56255 6.66185 6.67177 6.93845 7.01952 7.43384 7.93285 7.98813 8.30481 8.91430 9.69353 10.07299 11.18019 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.004749 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.743345 B = 5894.838341 C = 7552.180206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.876 3.124 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.146 3.854 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.120 4.120 14 H 0.082 0.918 15 C 0.123 3.877 16 N -0.698 5.698 17 C 0.573 3.427 18 O -0.530 6.530 19 C 0.055 3.945 20 C 0.108 3.892 21 N -0.423 5.423 22 C 0.093 3.907 23 C 0.124 3.876 24 Cl 0.004 6.996 25 N -0.402 5.402 26 C 0.132 3.868 27 H 0.263 0.737 28 H 0.062 0.938 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.417 0.583 37 H 0.193 0.807 38 H 0.187 0.813 39 H 0.025 0.975 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 4.777 -13.465 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.707 3.293 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.390 4.390 8 H 0.104 0.896 9 N -0.328 5.328 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.138 4.138 13 C -0.141 4.141 14 H 0.100 0.900 15 C -0.001 4.001 16 N -0.349 5.349 17 C 0.356 3.644 18 O -0.407 6.407 19 C -0.087 4.087 20 C -0.052 4.052 21 N -0.136 5.136 22 C -0.069 4.069 23 C -0.046 4.046 24 Cl 0.032 6.968 25 N -0.122 5.122 26 C 0.007 3.993 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.209 0.791 38 H 0.204 0.796 39 H 0.043 0.957 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.346 4.916 -13.558 15.756 hybrid contribution -0.380 0.920 0.270 1.031 sum 5.966 5.836 -13.287 15.691 Atomic orbital electron populations 1.69820 1.05639 1.26518 1.52743 1.25249 0.95171 0.97318 0.99475 0.87054 0.80075 0.85032 0.77166 1.21454 1.23180 1.19716 1.18925 0.84977 0.94770 1.40283 0.89613 1.44327 1.08716 1.33565 1.46190 1.20953 0.92392 0.91279 0.93339 1.21991 0.99473 0.97492 0.98410 1.21340 0.96894 0.96888 0.98696 1.22000 0.98553 0.96591 0.96973 0.89998 1.21609 0.89940 0.92476 0.96039 1.46015 1.12830 1.33671 1.42399 1.17508 0.86724 0.80381 0.79825 1.90799 1.17618 1.69852 1.62453 1.22325 0.90513 0.97991 0.97913 1.23958 1.01289 0.89251 0.90665 1.68755 1.00144 1.23218 1.21496 1.23970 0.94880 0.94706 0.93374 1.22986 0.90110 0.95221 0.96309 1.98476 1.09472 1.96219 1.92603 1.67782 1.00202 1.23594 1.20630 1.21389 0.97098 0.91877 0.88985 0.92750 0.91917 0.96024 0.91909 0.92535 0.92685 0.92266 0.91030 0.91096 0.74583 0.79054 0.79621 0.95674 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.97 55.49 0.78 -26.56 16 2 C 0.03 0.77 5.23 -17.43 -0.09 0.68 16 3 Si 0.88 22.35 24.35 -169.99 -4.14 18.22 16 4 H -0.29 -7.03 6.62 56.52 0.37 -6.66 16 5 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.27 -6.89 6.64 56.52 0.38 -6.52 16 7 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 8 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 9 N -0.60 -14.00 2.77 -172.32 -0.48 -14.47 16 10 C 0.15 2.79 6.52 -3.72 -0.02 2.76 16 11 C -0.13 -2.07 6.08 -26.61 -0.16 -2.24 16 12 C -0.10 -1.44 5.17 -26.69 -0.14 -1.58 16 13 C -0.12 -1.98 2.37 -90.50 -0.21 -2.20 16 14 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.12 1.82 5.07 -4.04 -0.02 1.80 16 16 N -0.70 -11.01 5.32 -61.15 -0.33 -11.34 16 17 C 0.57 8.78 7.81 -12.19 -0.10 8.69 16 18 O -0.53 -8.73 16.34 5.35 0.09 -8.65 16 19 C 0.05 0.76 6.75 -82.84 -0.56 0.20 16 20 C 0.11 1.25 10.77 -17.01 -0.18 1.07 16 21 N -0.42 -4.63 10.49 -12.68 -0.13 -4.76 16 22 C 0.09 0.91 11.02 -17.19 -0.19 0.72 16 23 C 0.12 1.53 7.29 -17.28 -0.13 1.40 16 24 Cl 0.00 0.05 29.13 -51.86 -1.51 -1.46 16 25 N -0.40 -5.92 9.70 -6.76 -0.07 -5.98 16 26 C 0.13 2.77 3.29 -3.70 -0.01 2.76 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.42 6.99 7.05 -40.82 -0.29 6.71 16 37 H 0.19 1.86 7.65 -52.48 -0.40 1.46 16 38 H 0.19 1.13 8.06 -52.48 -0.42 0.70 16 39 H 0.03 0.54 7.07 -51.93 -0.37 0.17 16 40 H 0.07 1.64 3.71 -51.93 -0.19 1.45 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -31.84 342.80 -7.67 -39.51 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.08 Total: 3.59 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.97 Total: 6.75 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.23 Total: -63.12 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.22 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.51 Total: -1.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.84 -7.67 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277084113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.715 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds