Wall clock time and date at job start Tue Mar 31 2020 13:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99740 * 2 1 4 4 H 1.48500 * 109.47017 * 272.92828 * 3 2 1 5 5 H 1.48498 * 109.47215 * 32.92945 * 3 2 1 6 6 H 1.48501 * 109.47242 * 152.93209 * 3 2 1 7 7 C 1.38813 * 120.00627 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99481 * 339.35998 * 7 2 1 9 9 N 1.36933 * 120.00602 * 159.36189 * 7 2 1 10 10 C 1.46918 * 120.63570 * 152.59072 * 9 7 2 11 11 C 1.53190 * 108.77348 * 126.38973 * 10 9 7 12 12 C 1.53036 * 109.31434 * 54.64153 * 11 10 9 13 13 C 1.53045 * 109.53743 * 298.63390 * 12 11 10 14 14 H 1.08995 * 109.49348 * 301.38085 * 13 12 11 15 15 C 1.53001 * 109.49706 * 181.31549 * 13 12 11 16 16 N 1.46505 * 109.46800 * 175.06732 * 15 13 12 17 17 C 1.34769 * 119.99902 * 180.02562 * 16 15 13 18 18 O 1.21515 * 120.00407 * 359.97438 * 17 16 15 19 19 C 1.48154 * 119.99977 * 179.97438 * 17 16 15 20 20 C 1.39402 * 120.08637 * 179.97438 * 19 17 16 21 21 N 1.32093 * 119.90583 * 180.02562 * 20 19 17 22 22 C 1.32099 * 120.09050 * 359.97438 * 21 20 19 23 23 C 1.38905 * 120.17515 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 119.95030 * 179.97438 * 23 22 21 25 25 N 1.31889 * 120.09294 * 359.97438 * 23 22 21 26 26 C 1.46941 * 120.60220 * 332.57479 * 9 7 2 27 27 H 0.96993 * 120.00528 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58553 * 6.60603 * 10 9 7 29 29 H 1.08999 * 109.70750 * 246.24985 * 10 9 7 30 30 H 1.09001 * 109.50456 * 294.68607 * 11 10 9 31 31 H 1.09009 * 109.49936 * 174.59179 * 11 10 9 32 32 H 1.08999 * 109.46669 * 178.61092 * 12 11 10 33 33 H 1.09000 * 109.45240 * 58.64498 * 12 11 10 34 34 H 1.08998 * 109.47195 * 55.06579 * 15 13 12 35 35 H 1.08998 * 109.47008 * 295.05978 * 15 13 12 36 36 H 0.97001 * 119.99985 * 359.97438 * 16 15 13 37 37 H 1.08005 * 120.04241 * 0.04554 * 20 19 17 38 38 H 1.08003 * 119.90769 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.56239 * 113.79920 * 26 9 7 40 40 H 1.09004 * 109.61299 * 353.37544 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4356 2.0822 -1.3983 5 1 1.4799 2.6340 0.7611 6 1 3.5773 1.4232 0.6371 7 6 2.0103 -1.2021 0.0005 8 1 1.5223 -2.1072 0.3307 9 7 3.3138 -1.2403 -0.4174 10 6 4.2352 -2.2625 0.0969 11 6 4.8753 -2.9908 -1.0890 12 6 5.5291 -1.9664 -2.0192 13 6 4.4623 -1.0104 -2.5581 14 1 3.7000 -1.5790 -3.0906 15 6 5.1115 -0.0070 -3.5134 16 7 4.0743 0.8319 -4.1191 17 6 4.4146 1.7930 -5.0004 18 8 5.5817 1.9642 -5.2924 19 6 3.3657 2.6410 -5.6134 20 6 3.7157 3.6360 -6.5249 21 7 2.7777 4.3903 -7.0689 22 6 1.5094 4.2025 -6.7506 23 6 1.1567 3.2120 -5.8429 24 17 -0.5117 2.9706 -5.4284 25 7 2.0875 2.4548 -5.2955 26 6 3.8168 -0.2596 -1.3892 27 1 -0.4850 0.8399 -0.0004 28 1 3.6842 -2.9760 0.7097 29 1 5.0119 -1.7887 0.6972 30 1 4.1089 -3.5409 -1.6350 31 1 5.6319 -3.6856 -0.7240 32 1 6.0066 -2.4839 -2.8512 33 1 6.2781 -1.3999 -1.4659 34 1 5.6471 -0.5445 -4.2959 35 1 5.8100 0.6213 -2.9607 36 1 3.1427 0.6951 -3.8864 37 1 4.7524 3.7897 -6.7860 38 1 0.7449 4.8212 -7.1969 39 1 4.5587 0.3801 -0.9114 40 1 2.9901 0.3480 -1.7572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277084113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:55 Heat of formation + Delta-G solvation = 4.921567 kcal Electronic energy + Delta-G solvation = -25302.200188 eV Core-core repulsion = 21563.636169 eV Total energy + Delta-G solvation = -3738.564019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.61843 -40.76325 -39.55067 -38.02333 -36.43531 -35.79182 -34.82010 -33.07552 -32.69108 -32.01625 -27.90974 -27.17527 -26.38207 -25.61044 -24.15239 -22.61038 -22.09990 -20.93026 -19.59495 -19.16809 -18.82933 -18.08091 -17.39126 -17.04794 -17.01841 -16.78134 -16.21581 -15.79978 -15.46007 -15.32750 -15.01516 -14.78792 -14.51571 -14.28356 -13.95974 -13.68457 -13.47760 -13.39218 -13.15557 -13.09270 -12.63426 -12.60118 -12.43302 -12.21836 -12.11657 -11.84033 -11.69767 -11.60319 -11.32766 -11.26374 -10.68174 -10.57994 -10.54870 -10.23842 -8.93045 -8.18874 -5.48963 -1.02882 -0.48493 0.38792 1.22985 1.34376 1.35734 1.41922 1.78281 2.34125 2.36216 2.67225 2.87747 2.93014 3.02053 3.31698 3.61871 3.71049 3.80756 3.90575 3.97382 4.08684 4.30879 4.43402 4.47235 4.58995 4.70980 4.74620 4.79903 4.86889 4.97956 5.08565 5.12796 5.23979 5.30357 5.31586 5.57426 5.59758 5.86163 6.06545 6.11632 6.27144 6.80162 6.91166 7.61822 8.02565 9.00855 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.004749 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.743345 B = 5894.838341 C = 7552.180206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.025 4.025 3 Si 0.936 3.064 4 H -0.276 1.276 5 H -0.315 1.315 6 H -0.267 1.267 7 C -0.247 4.247 8 H 0.055 0.945 9 N -0.620 5.620 10 C 0.137 3.863 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.108 4.108 14 H 0.071 0.929 15 C 0.128 3.872 16 N -0.707 5.707 17 C 0.575 3.425 18 O -0.545 6.545 19 C 0.032 3.968 20 C 0.121 3.879 21 N -0.425 5.425 22 C 0.117 3.883 23 C 0.110 3.890 24 Cl 0.000 7.000 25 N -0.432 5.432 26 C 0.130 3.870 27 H 0.260 0.740 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.410 0.590 37 H 0.210 0.790 38 H 0.227 0.773 39 H 0.025 0.975 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 5.381 -15.129 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.220 4.220 3 Si 0.766 3.234 4 H -0.203 1.203 5 H -0.244 1.244 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.073 0.927 9 N -0.345 5.345 10 C 0.013 3.987 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.129 4.129 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.357 5.357 17 C 0.359 3.641 18 O -0.423 6.423 19 C -0.108 4.108 20 C -0.038 4.038 21 N -0.139 5.139 22 C -0.045 4.045 23 C -0.060 4.060 24 Cl 0.028 6.972 25 N -0.152 5.152 26 C 0.005 3.995 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.226 0.774 38 H 0.243 0.757 39 H 0.043 0.957 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.716 5.501 -15.236 18.394 hybrid contribution -1.130 0.666 0.787 1.529 sum 7.585 6.166 -14.449 17.445 Atomic orbital electron populations 1.69936 1.07113 1.26959 1.55610 1.25754 0.95657 1.00134 1.00491 0.86084 0.78646 0.81261 0.77404 1.20302 1.24413 1.19211 1.18884 0.86849 0.93488 1.38424 0.92748 1.44492 1.07865 1.34869 1.47227 1.21190 0.91915 0.90464 0.95173 1.21894 0.99875 0.97805 0.96825 1.21376 0.96170 0.96301 0.99633 1.21821 0.98967 0.96795 0.95275 0.91022 1.21609 0.89578 0.92129 0.96222 1.46122 1.12603 1.34178 1.42759 1.17681 0.86922 0.80146 0.79400 1.90778 1.18191 1.70328 1.63002 1.22166 0.89990 0.99190 0.99496 1.24205 1.02245 0.88042 0.89307 1.68903 1.00418 1.23038 1.21500 1.24585 0.95291 0.93304 0.91322 1.23235 0.89686 0.95952 0.97166 1.98474 1.09635 1.96315 1.92750 1.67625 1.01005 1.24870 1.21747 1.21381 0.96350 0.91744 0.90051 0.93041 0.92904 0.94903 0.92968 0.89091 0.89352 0.91215 0.88878 0.90966 0.75394 0.77380 0.75661 0.95721 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 13.97 21.65 0.30 -59.23 16 2 C -0.03 -1.47 5.23 84.86 0.44 -1.02 16 3 Si 0.94 47.42 24.35 68.60 1.67 49.09 16 4 H -0.28 -13.33 6.62 99.48 0.66 -12.68 16 5 H -0.31 -16.38 7.11 99.48 0.71 -15.68 16 6 H -0.27 -13.14 6.64 99.48 0.66 -12.48 16 7 C -0.25 -13.91 10.03 84.03 0.84 -13.07 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 9 N -0.62 -28.61 2.77 -699.09 -1.94 -30.54 16 10 C 0.14 5.05 6.52 86.36 0.56 5.62 16 11 C -0.13 -3.50 6.08 30.67 0.19 -3.31 16 12 C -0.10 -2.43 5.17 30.62 0.16 -2.27 16 13 C -0.11 -3.35 2.37 -10.71 -0.03 -3.37 16 14 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.13 3.51 5.07 86.38 0.44 3.94 16 16 N -0.71 -21.65 5.32 -465.68 -2.48 -24.13 16 17 C 0.57 17.01 7.81 86.88 0.68 17.69 16 18 O -0.54 -17.08 16.34 -3.76 -0.06 -17.14 16 19 C 0.03 0.87 6.75 41.88 0.28 1.15 16 20 C 0.12 2.57 10.77 84.93 0.91 3.48 16 21 N -0.43 -8.23 10.49 -194.02 -2.03 -10.26 16 22 C 0.12 2.01 11.02 84.81 0.93 2.95 16 23 C 0.11 2.59 7.29 84.84 0.62 3.21 16 24 Cl 0.00 0.00 29.13 -2.72 -0.08 -0.08 16 25 N -0.43 -12.50 9.70 -175.29 -1.70 -14.20 16 26 C 0.13 5.32 3.29 86.36 0.28 5.61 16 27 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.41 13.79 7.05 -92.71 -0.65 13.13 16 37 H 0.21 3.59 7.65 -2.91 -0.02 3.57 16 38 H 0.23 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.02 1.02 7.07 -2.39 -0.02 1.01 16 40 H 0.05 2.13 3.71 -2.39 -0.01 2.12 16 Total: -1.00 -70.71 342.80 0.33 -70.37 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.33 Total: 15.52 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.32 Total: 20.60 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -7.85 Total: -138.36 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.06 Total: -17.14 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.67 Total: 49.09 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -70.71 0.33 -70.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277084113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.292 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds