Wall clock time and date at job start Tue Mar 31 2020 13:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21522 * 120.00114 * 0.02562 * 17 16 15 19 19 C 1.48092 * 119.99943 * 180.02562 * 17 16 15 20 20 C 1.39439 * 120.07649 * 179.72014 * 19 17 16 21 21 N 1.32079 * 119.89324 * 179.73108 * 20 19 17 22 22 C 1.32254 * 120.05474 * 0.54314 * 21 20 19 23 23 Cl 1.73594 * 119.91961 * 179.70537 * 22 21 20 24 24 C 1.38941 * 120.15910 * 359.73666 * 22 21 20 25 25 N 1.31744 * 120.10654 * 359.96852 * 24 22 21 26 26 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 27 27 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 29 29 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 30 30 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 31 31 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 32 32 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 33 33 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 34 34 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 35 35 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 36 36 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 37 37 H 1.08000 * 120.05131 * 0.02562 * 20 19 17 38 38 H 1.07999 * 119.95036 * 179.97438 * 24 22 21 39 39 H 1.09004 * 109.58771 * 246.19814 * 26 9 7 40 40 H 1.08998 * 109.58854 * 6.63257 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5695 -8.1145 -0.7630 19 6 5.4517 -7.0089 -1.6024 20 6 5.9698 -8.1637 -2.1874 21 7 7.1088 -8.1097 -2.8540 22 6 7.7623 -6.9646 -2.9572 23 17 9.2628 -6.8993 -3.8276 24 6 7.2510 -5.8137 -2.3701 25 7 6.1125 -5.8591 -1.7087 26 6 1.8152 -3.6539 -0.1863 27 1 -0.4850 0.8399 -0.0004 28 1 0.1001 -1.3265 1.6691 29 1 -0.6743 -2.6384 0.7459 30 1 1.3517 -2.9480 3.0109 31 1 -0.3776 -3.3672 3.0687 32 1 0.9907 -5.3887 2.6790 33 1 -0.0199 -5.0363 1.2570 34 1 2.5016 -6.7021 1.2763 35 1 1.6148 -6.3325 -0.2222 36 1 4.1561 -5.1085 -0.3666 37 1 5.4382 -9.0997 -2.0997 38 1 7.7876 -4.8805 -2.4562 39 1 1.0392 -4.0654 -0.8318 40 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278709260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:59 Heat of formation + Delta-G solvation = 21.724045 kcal Electronic energy + Delta-G solvation = -24493.202253 eV Core-core repulsion = 20755.366844 eV Total energy + Delta-G solvation = -3737.835409 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.75792 -39.59084 -37.83296 -37.33934 -35.23679 -34.73295 -33.04186 -32.05225 -30.47943 -30.33109 -26.48037 -25.44175 -25.30596 -24.58206 -22.18375 -21.31538 -20.83474 -19.26706 -18.54099 -18.20877 -17.63025 -16.67102 -16.04272 -15.88860 -15.43170 -15.15063 -14.84820 -14.42063 -14.23349 -13.76346 -13.55869 -13.46499 -12.83947 -12.70791 -12.39877 -12.32808 -12.26136 -12.20191 -11.99069 -11.68972 -11.33214 -11.05063 -10.74680 -10.62213 -10.53399 -10.26608 -10.20846 -9.95398 -9.77121 -9.76561 -9.57708 -9.45307 -9.07600 -8.48764 -6.70243 -5.81661 -3.24227 -0.26368 0.41976 1.06887 2.33125 2.83037 3.25454 3.34877 3.42538 3.44450 3.47408 3.70998 3.76412 4.42239 4.45729 4.53465 4.95107 5.03487 5.24460 5.39036 5.42445 5.52341 5.58268 5.77152 5.85517 5.94209 6.18468 6.23748 6.31989 6.35377 6.43076 6.56414 6.66135 6.73447 6.82199 6.90394 6.92638 7.37072 7.39829 7.65046 7.76688 7.95830 8.41831 9.18204 9.81716 10.38276 11.26630 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.002963 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.414844 B = 9448.654891 C =11367.228900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.075 0.925 15 C 0.124 3.876 16 N -0.696 5.696 17 C 0.572 3.428 18 O -0.530 6.530 19 C 0.036 3.964 20 C 0.129 3.871 21 N -0.434 5.434 22 C 0.138 3.862 23 Cl -0.003 7.003 24 C 0.078 3.922 25 N -0.391 5.391 26 C 0.153 3.847 27 H 0.254 0.746 28 H 0.086 0.914 29 H 0.018 0.982 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.414 0.586 37 H 0.194 0.806 38 H 0.189 0.811 39 H 0.019 0.981 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.221 -13.906 -2.312 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.001 3.999 16 N -0.347 5.347 17 C 0.355 3.645 18 O -0.407 6.407 19 C -0.105 4.105 20 C -0.031 4.031 21 N -0.150 5.150 22 C -0.030 4.030 23 Cl 0.025 6.975 24 C -0.086 4.086 25 N -0.109 5.109 26 C 0.026 3.974 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.251 0.749 37 H 0.211 0.789 38 H 0.206 0.794 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.745 -14.476 -2.296 19.424 hybrid contribution 0.858 1.297 -0.243 1.574 sum 13.603 -13.179 -2.539 19.110 Atomic orbital electron populations 1.70037 1.05294 1.25511 1.53744 1.25033 0.95253 0.98423 1.00871 0.86311 0.79253 0.83776 0.77623 1.21466 1.21562 1.20394 1.19167 0.92689 0.84847 1.41653 0.91687 1.44049 1.36012 1.01232 1.50026 1.20803 0.88522 0.98447 0.87974 1.22167 1.00136 0.95890 0.99868 1.21339 0.96637 0.97826 0.97935 1.22054 0.98993 0.93313 0.99571 0.90672 1.21620 0.84175 0.98565 0.95574 1.45966 1.24497 1.11588 1.52615 1.17470 0.83123 0.84598 0.79355 1.90817 1.59511 1.29740 1.60633 1.22454 0.97356 0.91047 0.99656 1.23846 0.89797 0.99993 0.89459 1.68009 1.06929 1.26065 1.13985 1.23247 0.91798 0.92089 0.95882 1.98450 1.27311 1.98043 1.73682 1.23753 0.92514 0.98719 0.93568 1.68549 1.05273 1.25995 1.11054 1.20996 0.97536 0.86891 0.91964 0.93629 0.89537 0.96428 0.92722 0.93142 0.93379 0.92409 0.91414 0.91009 0.74854 0.78926 0.79398 0.96306 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.23 2.99 -172.06 -0.51 -14.74 16 10 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.10 -1.56 5.16 -26.69 -0.14 -1.69 16 13 C -0.12 -1.86 2.39 -90.27 -0.22 -2.08 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.12 1.69 5.06 -4.05 -0.02 1.67 16 16 N -0.70 -9.11 5.32 -61.17 -0.33 -9.43 16 17 C 0.57 7.55 7.81 -12.22 -0.10 7.45 16 18 O -0.53 -8.08 16.34 5.35 0.09 -7.99 16 19 C 0.04 0.42 6.75 -82.85 -0.56 -0.14 16 20 C 0.13 1.32 10.77 -17.00 -0.18 1.14 16 21 N -0.43 -4.54 10.48 -9.81 -0.10 -4.64 16 22 C 0.14 1.28 7.29 -17.11 -0.12 1.15 16 23 Cl 0.00 -0.03 29.13 -51.86 -1.51 -1.54 16 24 C 0.08 0.68 11.01 -17.33 -0.19 0.49 16 25 N -0.39 -4.26 9.71 -9.58 -0.09 -4.36 16 26 C 0.15 3.00 5.63 -3.48 -0.02 2.98 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 36 H 0.41 5.31 7.07 -40.82 -0.29 5.02 16 37 H 0.19 1.67 7.65 -52.49 -0.40 1.27 16 38 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.98 7.16 -51.93 -0.37 0.61 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -30.37 349.28 -8.71 -39.09 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.15 Total: 2.10 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.96 Total: 5.20 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.41 Total: -58.29 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.51 Total: -1.54 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.37 -8.71 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278709260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.812 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds