Wall clock time and date at job start Tue Mar 31 2020 13:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21522 * 120.00114 * 0.02562 * 17 16 15 19 19 C 1.48092 * 119.99943 * 180.02562 * 17 16 15 20 20 C 1.39439 * 120.07649 * 179.72014 * 19 17 16 21 21 N 1.32079 * 119.89324 * 179.73108 * 20 19 17 22 22 C 1.32254 * 120.05474 * 0.54314 * 21 20 19 23 23 Cl 1.73594 * 119.91961 * 179.70537 * 22 21 20 24 24 C 1.38941 * 120.15910 * 359.73666 * 22 21 20 25 25 N 1.31744 * 120.10654 * 359.96852 * 24 22 21 26 26 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 27 27 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 29 29 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 30 30 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 31 31 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 32 32 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 33 33 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 34 34 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 35 35 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 36 36 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 37 37 H 1.08000 * 120.05131 * 0.02562 * 20 19 17 38 38 H 1.07999 * 119.95036 * 179.97438 * 24 22 21 39 39 H 1.09004 * 109.58771 * 246.19814 * 26 9 7 40 40 H 1.08998 * 109.58854 * 6.63257 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5695 -8.1145 -0.7630 19 6 5.4517 -7.0089 -1.6024 20 6 5.9698 -8.1637 -2.1874 21 7 7.1088 -8.1097 -2.8540 22 6 7.7623 -6.9646 -2.9572 23 17 9.2628 -6.8993 -3.8276 24 6 7.2510 -5.8137 -2.3701 25 7 6.1125 -5.8591 -1.7087 26 6 1.8152 -3.6539 -0.1863 27 1 -0.4850 0.8399 -0.0004 28 1 0.1001 -1.3265 1.6691 29 1 -0.6743 -2.6384 0.7459 30 1 1.3517 -2.9480 3.0109 31 1 -0.3776 -3.3672 3.0687 32 1 0.9907 -5.3887 2.6790 33 1 -0.0199 -5.0363 1.2570 34 1 2.5016 -6.7021 1.2763 35 1 1.6148 -6.3325 -0.2222 36 1 4.1561 -5.1085 -0.3666 37 1 5.4382 -9.0997 -2.0997 38 1 7.7876 -4.8805 -2.4562 39 1 1.0392 -4.0654 -0.8318 40 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278709260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:58 Heat of formation + Delta-G solvation = 1.452251 kcal Electronic energy + Delta-G solvation = -24494.081304 eV Core-core repulsion = 20755.366844 eV Total energy + Delta-G solvation = -3738.714460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55428 -40.64856 -39.30360 -38.03018 -36.40880 -35.73798 -34.63344 -32.91917 -32.27972 -31.75606 -27.60492 -27.18208 -26.26141 -25.58538 -23.81193 -22.71138 -21.96076 -20.74265 -19.46653 -19.07837 -18.61798 -18.34528 -16.98569 -16.93596 -16.79215 -16.21108 -16.19579 -15.72073 -15.39719 -15.25638 -15.00148 -14.51361 -14.44151 -14.00097 -13.75109 -13.69659 -13.29225 -13.11527 -12.99231 -12.87342 -12.64656 -12.49142 -12.43702 -12.25417 -11.96408 -11.81166 -11.70769 -11.53612 -11.23920 -11.07174 -10.54524 -10.51331 -10.50516 -10.12991 -8.65994 -7.85419 -5.30666 -1.05955 -0.32644 0.36789 1.41525 1.47614 1.49654 1.59273 1.86906 2.41146 2.52697 2.67956 2.94520 3.05278 3.29484 3.58368 3.63597 3.70397 3.99763 4.02150 4.08814 4.31176 4.43272 4.57709 4.61356 4.76992 4.80448 4.88891 4.91807 5.01947 5.13259 5.19585 5.32728 5.37161 5.45639 5.59302 5.65658 5.68994 5.80984 6.10893 6.39052 6.41782 6.93675 7.16833 7.88514 8.39980 9.20711 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.002963 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.414844 B = 9448.654891 C =11367.228900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.096 4.096 13 C -0.101 4.101 14 H 0.076 0.924 15 C 0.134 3.866 16 N -0.696 5.696 17 C 0.575 3.425 18 O -0.554 6.554 19 C 0.023 3.977 20 C 0.132 3.868 21 N -0.447 5.447 22 C 0.140 3.860 23 Cl 0.013 6.987 24 C 0.083 3.917 25 N -0.405 5.405 26 C 0.152 3.848 27 H 0.249 0.751 28 H 0.051 0.949 29 H -0.007 1.007 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.416 0.584 37 H 0.204 0.796 38 H 0.219 0.781 39 H 0.007 0.993 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.158 -14.808 -1.945 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.391 4.391 8 H 0.087 0.913 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.134 4.134 13 C -0.122 4.122 14 H 0.095 0.905 15 C 0.010 3.990 16 N -0.347 5.347 17 C 0.359 3.641 18 O -0.432 6.432 19 C -0.118 4.118 20 C -0.027 4.027 21 N -0.164 5.164 22 C -0.029 4.029 23 Cl 0.041 6.959 24 C -0.081 4.081 25 N -0.122 5.122 26 C 0.026 3.974 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.253 0.747 37 H 0.221 0.779 38 H 0.236 0.764 39 H 0.025 0.975 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.698 -15.410 -1.924 21.382 hybrid contribution 0.333 1.561 -0.449 1.658 sum 15.032 -13.849 -2.372 20.576 Atomic orbital electron populations 1.70196 1.06759 1.25747 1.55562 1.25790 0.95973 1.01529 1.01446 0.85304 0.78357 0.79736 0.77317 1.21421 1.22118 1.19124 1.19539 0.93068 0.86007 1.40477 0.91259 1.44323 1.36015 1.02158 1.50730 1.20645 0.87631 0.97878 0.89231 1.21996 1.00954 0.96012 0.97950 1.21336 0.96423 0.96737 0.98935 1.21807 0.99205 0.93385 0.97777 0.90544 1.21463 0.84362 0.97157 0.95989 1.45937 1.24308 1.11771 1.52651 1.17641 0.83476 0.84060 0.78942 1.90799 1.60406 1.30444 1.61564 1.22190 0.97085 0.91807 1.00674 1.23963 0.89733 1.00069 0.88983 1.68055 1.07155 1.26781 1.14392 1.23482 0.92043 0.91981 0.95391 1.98460 1.26229 1.97988 1.73211 1.24227 0.91778 0.99681 0.92379 1.68520 1.06094 1.25892 1.11712 1.21117 0.96955 0.85847 0.93477 0.94230 0.93099 0.98913 0.92870 0.91209 0.89860 0.92426 0.89812 0.91495 0.74673 0.77928 0.76439 0.97472 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.13 11.19 21.65 0.24 -54.89 16 2 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 3 Si 0.96 44.07 29.59 68.60 2.03 46.10 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.26 -13.97 9.58 84.03 0.81 -13.17 16 8 H 0.07 3.57 7.89 -2.92 -0.02 3.55 16 9 N -0.61 -29.63 2.99 -698.26 -2.09 -31.71 16 10 C 0.17 8.12 5.31 86.36 0.46 8.58 16 11 C -0.13 -4.58 6.08 30.67 0.19 -4.40 16 12 C -0.10 -2.79 5.16 30.62 0.16 -2.63 16 13 C -0.10 -3.00 2.39 -10.57 -0.03 -3.03 16 14 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 15 C 0.13 3.38 5.06 86.38 0.44 3.81 16 16 N -0.70 -17.22 5.32 -465.75 -2.48 -19.70 16 17 C 0.57 14.53 7.81 86.86 0.68 15.21 16 18 O -0.55 -16.29 16.34 -3.79 -0.06 -16.36 16 19 C 0.02 0.50 6.75 41.87 0.28 0.78 16 20 C 0.13 2.56 10.77 84.95 0.91 3.47 16 21 N -0.45 -8.71 10.48 -184.96 -1.94 -10.65 16 22 C 0.14 2.32 7.29 84.80 0.62 2.94 16 23 Cl 0.01 0.17 29.13 -2.72 -0.08 0.09 16 24 C 0.08 1.28 11.01 84.87 0.93 2.21 16 25 N -0.40 -8.18 9.71 -184.23 -1.79 -9.97 16 26 C 0.15 5.90 5.63 86.51 0.49 6.38 16 27 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.05 2.75 6.04 -2.39 -0.01 2.74 16 29 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.42 10.09 7.07 -92.70 -0.66 9.44 16 37 H 0.20 3.34 7.65 -2.91 -0.02 3.32 16 38 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.05 2.02 7.16 -2.39 -0.02 2.00 16 Total: -1.00 -66.24 349.28 0.61 -65.63 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.42 Total: 13.75 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.35 Total: 17.71 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -8.05 Total: -126.92 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.06 Total: -16.36 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.08 Total: 0.09 kcal Total: -66.24 0.61 -65.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278709260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.084 kcal (2) G-P(sol) polarization free energy of solvation -66.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds