Wall clock time and date at job start Tue Mar 31 2020 13:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47390 * 272.91038 * 3 2 1 5 5 H 1.48501 * 109.47116 * 32.91117 * 3 2 1 6 6 H 1.48504 * 109.47242 * 152.91051 * 3 2 1 7 7 C 1.38818 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99746 * 339.32755 * 7 2 1 9 9 N 1.36936 * 120.00110 * 159.33420 * 7 2 1 10 10 C 1.46925 * 120.62746 * 152.58231 * 9 7 2 11 11 C 1.53192 * 108.77159 * 126.41529 * 10 9 7 12 12 C 1.53043 * 109.31505 * 54.63160 * 11 10 9 13 13 C 1.53039 * 109.52657 * 298.64321 * 12 11 10 14 14 H 1.09002 * 109.49475 * 301.40147 * 13 12 11 15 15 C 1.53003 * 109.49636 * 181.30816 * 13 12 11 16 16 N 1.46498 * 109.46904 * 174.99684 * 15 13 12 17 17 C 1.34777 * 119.99656 * 179.97438 * 16 15 13 18 18 O 1.21527 * 120.00283 * 0.02562 * 17 16 15 19 19 C 1.48092 * 119.99687 * 180.02562 * 17 16 15 20 20 C 1.39441 * 120.07918 * 180.02562 * 19 17 16 21 21 N 1.32066 * 119.89508 * 179.97438 * 20 19 17 22 22 C 1.32249 * 120.05760 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 119.92194 * 179.97438 * 22 21 20 24 24 C 1.38941 * 120.15842 * 359.97438 * 22 21 20 25 25 N 1.31732 * 120.10792 * 359.74742 * 24 22 21 26 26 C 1.46924 * 120.62808 * 332.60582 * 9 7 2 27 27 H 0.97001 * 119.99815 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.59274 * 6.62880 * 10 9 7 29 29 H 1.09004 * 109.70343 * 246.26851 * 10 9 7 30 30 H 1.09000 * 109.50157 * 294.68092 * 11 10 9 31 31 H 1.09001 * 109.49531 * 174.58402 * 11 10 9 32 32 H 1.09004 * 109.45670 * 58.65520 * 12 11 10 33 33 H 1.08996 * 109.46124 * 178.62699 * 12 11 10 34 34 H 1.08994 * 109.47363 * 295.00043 * 15 13 12 35 35 H 1.09003 * 109.47061 * 54.99833 * 15 13 12 36 36 H 0.96995 * 120.00122 * 0.02562 * 16 15 13 37 37 H 1.08005 * 120.04708 * 359.97438 * 20 19 17 38 38 H 1.08000 * 119.94845 * 180.02562 * 24 22 21 39 39 H 1.08998 * 109.59163 * 353.37358 * 26 9 7 40 40 H 1.09007 * 109.58605 * 113.65982 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0820 -1.3982 5 1 1.4798 2.6341 0.7607 6 1 3.5772 1.4232 0.6376 7 6 2.0103 -1.2022 -0.0005 8 1 1.5224 -2.1075 0.3292 9 7 3.3136 -1.2402 -0.4191 10 6 4.2351 -2.2628 0.0945 11 6 4.8752 -2.9901 -1.0922 12 6 5.5286 -1.9648 -2.0217 13 6 4.4615 -1.0087 -2.5594 14 1 3.6989 -1.5771 -3.0919 15 6 5.1102 -0.0042 -3.5140 16 7 4.0725 0.8338 -4.1199 17 6 4.4125 1.7963 -5.0000 18 8 5.5797 1.9687 -5.2912 19 6 3.3636 2.6438 -5.6121 20 6 3.7133 3.6398 -6.5232 21 7 2.7749 4.3932 -7.0672 22 6 1.5055 4.2030 -6.7489 23 17 0.2749 5.1958 -7.4656 24 6 1.1543 3.2106 -5.8421 25 7 2.0846 2.4518 -5.2998 26 6 3.8169 -0.2589 -1.3898 27 1 -0.4850 0.8401 0.0004 28 1 3.6844 -2.9768 0.7067 29 1 5.0119 -1.7893 0.6949 30 1 4.1087 -3.5398 -1.6384 31 1 5.6318 -3.6850 -0.7277 32 1 6.2779 -1.3986 -1.4682 33 1 6.0059 -2.4817 -2.8542 34 1 5.8079 0.6244 -2.9608 35 1 5.6467 -0.5409 -4.2965 36 1 3.1410 0.6964 -3.8872 37 1 4.7500 3.7948 -6.7835 38 1 0.1166 3.0580 -5.5849 39 1 2.9902 0.3494 -1.7568 40 1 4.5576 0.3818 -0.9110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278709263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:02 Heat of formation + Delta-G solvation = 27.503378 kcal Electronic energy + Delta-G solvation = -25092.784330 eV Core-core repulsion = 21355.199532 eV Total energy + Delta-G solvation = -3737.584798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.67715 -39.58755 -38.12073 -37.26282 -35.20393 -34.69652 -33.13140 -32.04302 -31.06654 -30.54144 -26.61372 -25.40576 -25.32640 -24.68853 -22.58138 -21.20081 -20.89779 -19.48681 -18.51859 -18.15717 -17.56766 -16.87341 -15.99223 -15.87316 -15.59905 -15.32977 -14.90025 -14.39328 -14.23488 -13.96134 -13.56245 -13.36459 -13.32221 -12.93285 -12.66970 -12.40667 -12.22892 -12.12688 -11.91079 -11.66676 -11.60455 -11.51099 -10.84696 -10.66715 -10.62971 -10.48685 -10.17527 -9.95489 -9.74449 -9.68466 -9.61720 -9.49342 -9.06188 -8.65742 -7.02140 -6.00015 -3.35556 -0.18435 0.51420 1.14779 2.38860 2.88414 3.25703 3.32803 3.44321 3.46567 3.56571 3.78807 3.85033 4.47131 4.50491 4.58809 4.77342 5.04200 5.10987 5.19074 5.25481 5.39160 5.55737 5.59966 5.71883 5.77221 5.97087 6.05347 6.06434 6.24247 6.28659 6.36348 6.50769 6.51225 6.54550 6.65010 6.65879 6.92579 6.99721 7.43572 7.91312 7.99028 8.28414 8.89463 9.67180 10.05301 11.15849 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.003821 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.982953 B = 7325.742859 C = 8835.650767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.026 3.974 3 Si 0.877 3.123 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.146 3.854 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.120 4.120 14 H 0.082 0.918 15 C 0.123 3.877 16 N -0.699 5.699 17 C 0.574 3.426 18 O -0.531 6.531 19 C 0.034 3.966 20 C 0.129 3.871 21 N -0.434 5.434 22 C 0.139 3.861 23 Cl -0.003 7.003 24 C 0.080 3.920 25 N -0.389 5.389 26 C 0.133 3.867 27 H 0.263 0.737 28 H 0.062 0.938 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.417 0.583 37 H 0.194 0.806 38 H 0.190 0.810 39 H 0.071 0.929 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 4.527 -13.234 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.173 4.173 3 Si 0.708 3.292 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.389 4.389 8 H 0.104 0.896 9 N -0.328 5.328 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.141 4.141 14 H 0.100 0.900 15 C -0.001 4.001 16 N -0.349 5.349 17 C 0.356 3.644 18 O -0.408 6.408 19 C -0.107 4.107 20 C -0.032 4.032 21 N -0.150 5.150 22 C -0.030 4.030 23 Cl 0.026 6.974 24 C -0.084 4.084 25 N -0.107 5.107 26 C 0.007 3.993 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.211 0.789 38 H 0.207 0.793 39 H 0.089 0.911 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.336 4.766 -13.431 15.596 hybrid contribution -0.281 1.188 0.040 1.221 sum 6.055 5.954 -13.391 15.857 Atomic orbital electron populations 1.69833 1.05649 1.26506 1.52850 1.25256 0.95176 0.97334 0.99509 0.87049 0.80086 0.84955 0.77156 1.21453 1.23184 1.19726 1.18941 0.84985 0.94788 1.40172 0.89596 1.44331 1.08716 1.33492 1.46282 1.20959 0.92401 0.91288 0.93352 1.21991 0.99478 0.97492 0.98404 1.21343 0.96908 0.96893 0.98710 1.21990 0.98552 0.96569 0.96954 0.89975 1.21604 0.89948 0.92485 0.96035 1.45995 1.12777 1.33651 1.42508 1.17473 0.86738 0.80353 0.79804 1.90801 1.17766 1.69861 1.62411 1.22440 0.92254 0.97971 0.98054 1.23816 1.00281 0.88732 0.90334 1.67992 0.99636 1.24557 1.22823 1.23245 0.90902 0.93739 0.95092 1.98446 1.48423 1.68329 1.82250 1.23794 1.01380 0.90627 0.92580 1.68580 1.00194 1.22563 1.19320 1.21379 0.97112 0.91853 0.88999 0.92758 0.91910 0.96010 0.91903 0.92531 0.92263 0.92677 0.91117 0.91050 0.74603 0.78937 0.79291 0.91093 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.93 13.97 55.49 0.78 -26.15 16 2 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 3 Si 0.88 21.93 24.34 -169.99 -4.14 17.79 16 4 H -0.29 -6.83 6.62 56.52 0.37 -6.46 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 7 C -0.26 -7.06 10.03 -15.06 -0.15 -7.21 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 9 N -0.61 -13.78 2.77 -172.34 -0.48 -14.26 16 10 C 0.15 2.74 6.52 -3.71 -0.02 2.72 16 11 C -0.13 -2.04 6.08 -26.61 -0.16 -2.20 16 12 C -0.10 -1.42 5.17 -26.69 -0.14 -1.56 16 13 C -0.12 -1.93 2.37 -90.51 -0.21 -2.14 16 14 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 15 C 0.12 1.78 5.07 -4.04 -0.02 1.76 16 16 N -0.70 -10.68 5.32 -61.17 -0.33 -11.00 16 17 C 0.57 8.61 7.81 -12.22 -0.10 8.52 16 18 O -0.53 -8.69 16.34 5.34 0.09 -8.60 16 19 C 0.03 0.46 6.75 -82.85 -0.56 -0.10 16 20 C 0.13 1.52 10.77 -17.00 -0.18 1.33 16 21 N -0.43 -5.18 10.48 -9.81 -0.10 -5.28 16 22 C 0.14 1.53 7.29 -17.11 -0.12 1.40 16 23 Cl 0.00 -0.03 29.13 -51.86 -1.51 -1.54 16 24 C 0.08 0.89 11.01 -17.33 -0.19 0.70 16 25 N -0.39 -5.32 9.71 -9.58 -0.09 -5.41 16 26 C 0.13 2.72 3.29 -3.73 -0.01 2.71 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.42 6.67 7.05 -40.82 -0.29 6.38 16 37 H 0.19 1.91 7.65 -52.48 -0.40 1.50 16 38 H 0.19 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.07 1.59 3.71 -51.93 -0.19 1.40 16 40 H 0.03 0.53 7.07 -51.93 -0.37 0.17 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -31.21 342.78 -7.66 -38.87 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.08 Total: 3.84 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -1.97 Total: 6.58 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.22 Total: -62.11 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.51 Total: -1.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.21 -7.66 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278709263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.372 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds