Wall clock time and date at job start Tue Mar 31 2020 13:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47390 * 272.91038 * 3 2 1 5 5 H 1.48501 * 109.47116 * 32.91117 * 3 2 1 6 6 H 1.48504 * 109.47242 * 152.91051 * 3 2 1 7 7 C 1.38818 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99746 * 339.32755 * 7 2 1 9 9 N 1.36936 * 120.00110 * 159.33420 * 7 2 1 10 10 C 1.46925 * 120.62746 * 152.58231 * 9 7 2 11 11 C 1.53192 * 108.77159 * 126.41529 * 10 9 7 12 12 C 1.53043 * 109.31505 * 54.63160 * 11 10 9 13 13 C 1.53039 * 109.52657 * 298.64321 * 12 11 10 14 14 H 1.09002 * 109.49475 * 301.40147 * 13 12 11 15 15 C 1.53003 * 109.49636 * 181.30816 * 13 12 11 16 16 N 1.46498 * 109.46904 * 174.99684 * 15 13 12 17 17 C 1.34777 * 119.99656 * 179.97438 * 16 15 13 18 18 O 1.21527 * 120.00283 * 0.02562 * 17 16 15 19 19 C 1.48092 * 119.99687 * 180.02562 * 17 16 15 20 20 C 1.39441 * 120.07918 * 180.02562 * 19 17 16 21 21 N 1.32066 * 119.89508 * 179.97438 * 20 19 17 22 22 C 1.32249 * 120.05760 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 119.92194 * 179.97438 * 22 21 20 24 24 C 1.38941 * 120.15842 * 359.97438 * 22 21 20 25 25 N 1.31732 * 120.10792 * 359.74742 * 24 22 21 26 26 C 1.46924 * 120.62808 * 332.60582 * 9 7 2 27 27 H 0.97001 * 119.99815 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.59274 * 6.62880 * 10 9 7 29 29 H 1.09004 * 109.70343 * 246.26851 * 10 9 7 30 30 H 1.09000 * 109.50157 * 294.68092 * 11 10 9 31 31 H 1.09001 * 109.49531 * 174.58402 * 11 10 9 32 32 H 1.09004 * 109.45670 * 58.65520 * 12 11 10 33 33 H 1.08996 * 109.46124 * 178.62699 * 12 11 10 34 34 H 1.08994 * 109.47363 * 295.00043 * 15 13 12 35 35 H 1.09003 * 109.47061 * 54.99833 * 15 13 12 36 36 H 0.96995 * 120.00122 * 0.02562 * 16 15 13 37 37 H 1.08005 * 120.04708 * 359.97438 * 20 19 17 38 38 H 1.08000 * 119.94845 * 180.02562 * 24 22 21 39 39 H 1.08998 * 109.59163 * 353.37358 * 26 9 7 40 40 H 1.09007 * 109.58605 * 113.65982 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0820 -1.3982 5 1 1.4798 2.6341 0.7607 6 1 3.5772 1.4232 0.6376 7 6 2.0103 -1.2022 -0.0005 8 1 1.5224 -2.1075 0.3292 9 7 3.3136 -1.2402 -0.4191 10 6 4.2351 -2.2628 0.0945 11 6 4.8752 -2.9901 -1.0922 12 6 5.5286 -1.9648 -2.0217 13 6 4.4615 -1.0087 -2.5594 14 1 3.6989 -1.5771 -3.0919 15 6 5.1102 -0.0042 -3.5140 16 7 4.0725 0.8338 -4.1199 17 6 4.4125 1.7963 -5.0000 18 8 5.5797 1.9687 -5.2912 19 6 3.3636 2.6438 -5.6121 20 6 3.7133 3.6398 -6.5232 21 7 2.7749 4.3932 -7.0672 22 6 1.5055 4.2030 -6.7489 23 17 0.2749 5.1958 -7.4656 24 6 1.1543 3.2106 -5.8421 25 7 2.0846 2.4518 -5.2998 26 6 3.8169 -0.2589 -1.3898 27 1 -0.4850 0.8401 0.0004 28 1 3.6844 -2.9768 0.7067 29 1 5.0119 -1.7893 0.6949 30 1 4.1087 -3.5398 -1.6384 31 1 5.6318 -3.6850 -0.7277 32 1 6.2779 -1.3986 -1.4682 33 1 6.0059 -2.4817 -2.8542 34 1 5.8079 0.6244 -2.9608 35 1 5.6467 -0.5409 -4.2965 36 1 3.1410 0.6964 -3.8872 37 1 4.7500 3.7948 -6.7835 38 1 0.1166 3.0580 -5.5849 39 1 2.9902 0.3494 -1.7568 40 1 4.5576 0.3818 -0.9110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278709263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:02 Heat of formation + Delta-G solvation = 5.070655 kcal Electronic energy + Delta-G solvation = -25093.757086 eV Core-core repulsion = 21355.199532 eV Total energy + Delta-G solvation = -3738.557554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62070 -40.75084 -39.53588 -38.08686 -36.43045 -35.77869 -34.80851 -33.13617 -32.67685 -31.97810 -27.79964 -27.15039 -26.37133 -25.73613 -24.13315 -22.58455 -22.07321 -20.90844 -19.55509 -19.13984 -18.81318 -18.46579 -17.34512 -17.01843 -16.96841 -16.30650 -16.17957 -15.80225 -15.45224 -15.42412 -15.01046 -14.80425 -14.52723 -14.47409 -13.94232 -13.73549 -13.39606 -13.33698 -13.17244 -13.06724 -12.69480 -12.57538 -12.49722 -12.19928 -12.09685 -11.76270 -11.67734 -11.57832 -11.30419 -11.24178 -10.65741 -10.60045 -10.55956 -10.21054 -8.91201 -8.16667 -5.47027 -1.12495 -0.38960 0.30462 1.25417 1.33713 1.38153 1.45108 1.81681 2.34554 2.38504 2.61795 2.88401 2.98918 3.04298 3.33281 3.53887 3.62735 3.82859 3.92779 3.98869 4.24639 4.32227 4.45139 4.49143 4.61016 4.71313 4.74888 4.77401 4.88392 4.99706 5.10337 5.14647 5.25583 5.31948 5.33588 5.59954 5.61157 5.88263 6.03819 6.13888 6.29929 6.83213 6.93190 7.63709 8.04556 9.03258 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.003821 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.982953 B = 7325.742859 C = 8835.650767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.024 4.024 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.315 1.315 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.054 0.946 9 N -0.620 5.620 10 C 0.137 3.863 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.107 4.107 14 H 0.073 0.927 15 C 0.128 3.872 16 N -0.705 5.705 17 C 0.575 3.425 18 O -0.547 6.547 19 C 0.017 3.983 20 C 0.136 3.864 21 N -0.443 5.443 22 C 0.143 3.857 23 Cl 0.016 6.984 24 C 0.079 3.921 25 N -0.413 5.413 26 C 0.130 3.870 27 H 0.261 0.739 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.412 0.588 37 H 0.210 0.790 38 H 0.214 0.786 39 H 0.048 0.952 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 4.845 -14.613 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.220 4.220 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.244 1.244 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.072 0.928 9 N -0.345 5.345 10 C 0.012 3.988 11 C -0.164 4.164 12 C -0.136 4.136 13 C -0.128 4.128 14 H 0.092 0.908 15 C 0.004 3.996 16 N -0.355 5.355 17 C 0.359 3.641 18 O -0.426 6.426 19 C -0.123 4.123 20 C -0.023 4.023 21 N -0.160 5.160 22 C -0.026 4.026 23 Cl 0.045 6.955 24 C -0.085 4.085 25 N -0.130 5.130 26 C 0.005 3.995 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.248 0.752 37 H 0.226 0.774 38 H 0.230 0.770 39 H 0.066 0.934 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.370 5.066 -14.826 17.763 hybrid contribution -0.962 1.038 0.465 1.489 sum 7.409 6.103 -14.361 17.273 Atomic orbital electron populations 1.69947 1.07139 1.27038 1.55592 1.25757 0.95654 1.00149 1.00417 0.86079 0.78494 0.81124 0.77648 1.19797 1.24440 1.19509 1.18895 0.86847 0.93533 1.38513 0.92815 1.44488 1.07853 1.34789 1.47323 1.21189 0.91927 0.90503 0.95174 1.21892 0.99867 0.97802 0.96831 1.21379 0.96225 0.96329 0.99622 1.21810 0.98957 0.96750 0.95270 0.90821 1.21600 0.89613 0.92140 0.96205 1.46084 1.12651 1.34018 1.42734 1.17624 0.86868 0.80154 0.79424 1.90782 1.18427 1.70366 1.63000 1.22290 0.92063 0.98774 0.99192 1.24009 1.00981 0.87898 0.89459 1.68074 1.00042 1.24744 1.23106 1.23429 0.91032 0.93553 0.94570 1.98457 1.47523 1.67690 1.81832 1.24184 1.02000 0.90128 0.92162 1.68526 1.00666 1.23603 1.20225 1.21379 0.96416 0.91706 0.90022 0.92956 0.92940 0.94987 0.92900 0.89199 0.91299 0.89400 0.91061 0.88966 0.75176 0.77386 0.76970 0.93356 0.95793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.33 13.97 21.65 0.30 -58.03 16 2 C -0.02 -1.40 5.23 84.86 0.44 -0.96 16 3 Si 0.94 46.17 24.34 68.60 1.67 47.84 16 4 H -0.27 -12.53 6.62 99.48 0.66 -11.87 16 5 H -0.32 -16.00 7.11 99.48 0.71 -15.29 16 6 H -0.27 -13.04 6.64 99.48 0.66 -12.38 16 7 C -0.25 -13.75 10.03 84.04 0.84 -12.91 16 8 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 9 N -0.62 -28.06 2.77 -699.15 -1.94 -30.00 16 10 C 0.14 4.96 6.52 86.36 0.56 5.52 16 11 C -0.13 -3.43 6.08 30.67 0.19 -3.24 16 12 C -0.10 -2.39 5.17 30.62 0.16 -2.24 16 13 C -0.11 -3.22 2.37 -10.73 -0.03 -3.25 16 14 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 15 C 0.13 3.39 5.07 86.38 0.44 3.83 16 16 N -0.70 -20.65 5.32 -465.73 -2.48 -23.13 16 17 C 0.58 16.59 7.81 86.86 0.68 17.27 16 18 O -0.55 -17.04 16.34 -3.80 -0.06 -17.10 16 19 C 0.02 0.45 6.75 41.87 0.28 0.73 16 20 C 0.14 3.03 10.77 84.95 0.91 3.94 16 21 N -0.44 -9.89 10.48 -184.96 -1.94 -11.83 16 22 C 0.14 2.92 7.29 84.80 0.62 3.54 16 23 Cl 0.02 0.27 29.13 -2.72 -0.08 0.19 16 24 C 0.08 1.67 11.01 84.88 0.93 2.60 16 25 N -0.41 -10.93 9.71 -184.23 -1.79 -12.72 16 26 C 0.13 5.18 3.29 86.35 0.28 5.46 16 27 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 29 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.41 12.96 7.05 -92.71 -0.65 12.30 16 37 H 0.21 3.80 7.65 -2.91 -0.02 3.78 16 38 H 0.21 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.05 2.14 3.71 -2.39 -0.01 2.14 16 40 H 0.02 0.97 7.07 -2.38 -0.02 0.95 16 Total: -1.00 -68.20 342.78 0.34 -67.86 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.33 Total: 16.61 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 6.32 Total: 20.30 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -7.84 Total: -135.70 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.06 Total: -17.10 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.67 Total: 47.84 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.08 Total: 0.19 kcal Total: -68.20 0.34 -67.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278709263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.928 kcal (2) G-P(sol) polarization free energy of solvation -68.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds