Wall clock time and date at job start Tue Mar 31 2020 14:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47086 * 118.71170 * 3 2 1 5 5 C 1.36940 * 120.00005 * 263.94367 * 4 3 2 6 6 H 1.08001 * 120.00180 * 201.07064 * 5 4 3 7 7 C 1.38813 * 119.99466 * 21.07619 * 5 4 3 8 8 N 1.31613 * 120.00287 * 15.30250 * 7 5 4 9 9 Si 1.86797 * 119.99582 * 195.30055 * 7 5 4 10 10 H 1.48500 * 109.47281 * 60.00307 * 9 7 5 11 11 H 1.48508 * 109.47343 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47549 * 300.00071 * 9 7 5 13 13 C 1.46503 * 120.00120 * 83.95339 * 4 3 2 14 14 C 1.50698 * 109.46824 * 269.99675 * 13 4 3 15 15 O 1.21296 * 120.00001 * 359.97438 * 14 13 4 16 16 N 1.34776 * 119.99974 * 180.02562 * 14 13 4 17 17 C 1.40113 * 120.00161 * 184.47185 * 16 14 13 18 18 C 1.38848 * 120.01213 * 325.96905 * 17 16 14 19 19 C 1.38089 * 119.98301 * 180.02562 * 18 17 16 20 20 C 1.38721 * 120.01332 * 0.02562 * 19 18 17 21 21 O 1.35966 * 119.98254 * 179.97438 * 20 19 18 22 22 C 1.42900 * 117.00103 * 179.97438 * 21 20 19 23 23 F 1.39892 * 109.47674 * 300.00190 * 22 21 20 24 24 F 1.39905 * 109.46782 * 60.00416 * 22 21 20 25 25 C 1.38719 * 120.03369 * 0.23308 * 20 19 18 26 26 C 1.38095 * 120.01297 * 359.49478 * 25 20 19 27 27 H 4.40636 * 5.51589 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.47161 * 358.70606 * 3 2 1 29 29 H 1.09006 * 109.47041 * 238.71067 * 3 2 1 30 30 H 0.97005 * 120.00128 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.47046 * 149.99714 * 13 4 3 32 32 H 1.08994 * 109.47380 * 29.99798 * 13 4 3 33 33 H 0.96999 * 119.99829 * 4.47106 * 16 14 13 34 34 H 1.07993 * 120.00793 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.99171 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47193 * 179.97438 * 22 21 20 37 37 H 1.07999 * 119.99587 * 179.72076 * 25 20 19 38 38 H 1.07995 * 120.00697 * 180.22934 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6644 -1.2113 5 6 3.4805 -0.0797 -2.3075 6 1 4.1406 0.3350 -3.0549 7 6 2.9831 -1.3669 -2.4579 8 7 1.9614 -1.7668 -1.7310 9 14 3.7641 -2.5315 -3.6921 10 1 5.1927 -2.7374 -3.3430 11 1 3.0535 -3.8352 -3.6608 12 1 3.6664 -1.9478 -5.0540 13 6 3.2515 2.1242 -1.2500 14 6 1.9597 2.7190 -1.7483 15 8 1.0322 1.9948 -2.0427 16 7 1.8352 4.0557 -1.8679 17 6 0.6055 4.6142 -2.2411 18 6 -0.2248 3.9379 -3.1248 19 6 -1.4363 4.4891 -3.4926 20 6 -1.8235 5.7185 -2.9798 21 8 -3.0163 6.2610 -3.3427 22 6 -3.3516 7.5292 -2.7759 23 9 -3.3971 7.4197 -1.3820 24 9 -2.3839 8.4724 -3.1383 25 6 -0.9920 6.3972 -2.1010 26 6 0.2173 5.8445 -1.7279 27 1 -1.0502 -0.0002 0.0000 28 1 3.0098 -1.0266 0.0232 29 1 3.0091 0.5346 0.8782 30 1 1.6141 -2.6664 -1.8359 31 1 4.0636 2.4057 -1.9205 32 1 3.4612 2.4985 -0.2481 33 1 2.5968 4.6310 -1.6956 34 1 0.0771 2.9814 -3.5251 35 1 -2.0821 3.9634 -4.1804 36 1 -4.3256 7.8473 -3.1478 37 1 -1.2921 7.3564 -1.7056 38 1 0.8628 6.3713 -1.0409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281529302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:40 Heat of formation + Delta-G solvation = -51.087367 kcal Electronic energy + Delta-G solvation = -26920.733597 eV Core-core repulsion = 22595.651417 eV Total energy + Delta-G solvation = -4325.082180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.55837 -47.54991 -40.24705 -39.09998 -37.21239 -35.59721 -33.84163 -31.45399 -31.22945 -30.94028 -29.23987 -27.12558 -26.05798 -25.74347 -23.04904 -22.70066 -21.51808 -19.87330 -19.09224 -18.22060 -18.11220 -17.54281 -17.32429 -16.51888 -16.13992 -15.97476 -14.98908 -14.95268 -14.68751 -14.34329 -14.09941 -14.02786 -13.86382 -13.75729 -13.43152 -13.38551 -13.22409 -12.93107 -12.83105 -12.38752 -12.04918 -12.01374 -11.40887 -11.31108 -11.00241 -10.91649 -10.73612 -10.29155 -10.06171 -9.69340 -9.17154 -8.88898 -8.78806 -8.59159 -8.26707 -7.60949 -6.99824 -5.75298 -3.25622 1.39081 1.43420 2.44956 3.25571 3.36423 3.38535 3.42880 3.44263 3.56903 3.91743 4.07383 4.32600 4.42643 4.53862 4.67094 4.80047 4.90363 5.23889 5.36819 5.42405 5.59793 5.63813 5.73761 5.95816 5.98083 6.05339 6.09190 6.19297 6.23993 6.54839 6.67859 6.73957 6.88610 7.25866 7.29217 7.57911 7.70978 7.92174 8.27757 8.95405 9.09601 9.45541 9.72070 10.16780 11.25696 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.002878 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.355122 B = 9726.652162 C = 9798.902679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.094 4.094 3 C 0.272 3.728 4 N -0.556 5.556 5 C -0.272 4.272 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.878 5.878 9 Si 0.906 3.094 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.130 3.870 14 C 0.462 3.538 15 O -0.472 6.472 16 N -0.691 5.691 17 C 0.144 3.856 18 C -0.091 4.091 19 C -0.112 4.112 20 C 0.070 3.930 21 O -0.322 6.322 22 C 0.411 3.589 23 F -0.200 7.200 24 F -0.202 7.202 25 C -0.171 4.171 26 C -0.123 4.123 27 H 0.183 0.817 28 H 0.099 0.901 29 H 0.033 0.967 30 H 0.255 0.745 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.178 0.822 37 H 0.130 0.870 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 18.869 0.336 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.096 4.096 3 C 0.147 3.853 4 N -0.273 5.273 5 C -0.401 4.401 6 H 0.092 0.908 7 C -0.188 4.188 8 N -0.519 5.519 9 Si 0.736 3.264 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.210 1.210 13 C -0.002 4.002 14 C 0.246 3.754 15 O -0.341 6.341 16 N -0.340 5.340 17 C 0.048 3.952 18 C -0.111 4.111 19 C -0.131 4.131 20 C 0.027 3.973 21 O -0.240 6.240 22 C 0.321 3.679 23 F -0.182 7.182 24 F -0.183 7.183 25 C -0.190 4.190 26 C -0.144 4.144 27 H 0.200 0.800 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.237 0.763 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.194 0.806 37 H 0.148 0.852 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.058 17.920 0.061 18.917 hybrid contribution 0.128 -0.006 -0.578 0.592 sum -5.930 17.914 -0.517 18.877 Atomic orbital electron populations 1.23947 0.95122 1.06099 1.05600 1.23836 0.94921 0.95416 0.95464 1.17849 0.83280 0.98464 0.85725 1.44140 1.72723 0.97952 1.12525 1.19120 1.23037 0.95732 1.02254 0.90796 1.25076 0.95874 0.99297 0.98589 1.70078 1.22107 1.18002 1.41707 0.86331 0.78686 0.80311 0.81087 1.20862 1.21645 1.20992 1.21142 0.92466 0.86852 0.99773 1.23938 0.93650 0.80031 0.77747 1.90747 1.40120 1.58809 1.44380 1.44406 1.10417 1.08918 1.70265 1.17947 0.88824 0.93357 0.95044 1.21321 0.93266 1.00973 0.95518 1.20365 0.97504 0.93078 1.02161 1.18760 0.85037 0.94698 0.98817 1.86597 1.36684 1.33679 1.67051 1.23296 0.91947 0.77323 0.75369 1.93096 1.96929 1.95528 1.32664 1.93087 1.67923 1.66108 1.91231 1.21189 0.95863 1.01145 1.00799 1.20678 0.96632 0.96233 1.00835 0.79977 0.88329 0.94871 0.93409 0.90160 0.91000 0.76323 0.82936 0.84915 0.80586 0.85186 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.22 18.77 29.55 0.55 -6.67 16 2 C -0.09 -2.39 9.89 -37.12 -0.37 -2.75 16 3 C 0.27 6.43 5.44 -6.83 -0.04 6.39 16 4 N -0.56 -13.19 2.09 -177.95 -0.37 -13.57 16 5 C -0.27 -7.16 9.67 -15.06 -0.15 -7.30 16 6 H 0.07 1.88 7.86 -52.49 -0.41 1.47 16 7 C 0.01 0.34 4.99 -17.43 -0.09 0.25 16 8 N -0.88 -25.15 9.25 55.49 0.51 -24.64 16 9 Si 0.91 21.44 29.58 -169.99 -5.03 16.42 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.13 2.41 6.18 -5.19 -0.03 2.38 16 14 C 0.46 9.05 7.65 -10.99 -0.08 8.97 16 15 O -0.47 -11.59 11.79 5.54 0.07 -11.52 16 16 N -0.69 -10.48 5.35 -9.83 -0.05 -10.53 16 17 C 0.14 2.29 6.32 -83.62 -0.53 1.76 16 18 C -0.09 -1.57 8.70 -39.41 -0.34 -1.91 16 19 C -0.11 -1.72 9.98 -39.46 -0.39 -2.12 16 20 C 0.07 1.00 6.48 -39.23 -0.25 0.74 16 21 O -0.32 -3.87 10.43 -19.63 -0.20 -4.07 16 22 C 0.41 3.50 5.98 101.05 0.60 4.11 16 23 F -0.20 -2.08 15.60 2.25 0.04 -2.04 16 24 F -0.20 -1.97 15.56 2.25 0.04 -1.94 16 25 C -0.17 -2.31 8.25 -39.46 -0.33 -2.64 16 26 C -0.12 -1.67 9.96 -39.41 -0.39 -2.06 16 27 H 0.18 4.06 7.80 -54.08 -0.42 3.64 16 28 H 0.10 2.52 6.50 -51.93 -0.34 2.18 16 29 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 32 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 33 H 0.40 4.45 8.82 -40.82 -0.36 4.09 16 34 H 0.15 3.06 6.14 -52.49 -0.32 2.74 16 35 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.18 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.13 1.58 5.09 -52.49 -0.27 1.31 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -34.47 337.97 -5.52 -39.98 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -3.77 Total: 7.68 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.83 Total: -0.85 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.09 Total: -48.74 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.14 Total: -15.60 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.07 Total: -3.98 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.47 -5.52 -39.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281529302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.103 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds